Rh4BG424000
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007183
Physical Location & Seq
Reverse (-)
56832384 .. 56835734
3351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG424000.1

Sequence Viewer

Length: 1029 bp
ATGGCTGCAGCAGCTTCACTCTCTTTCTCTTTGGATCCACACCGCCATCTCTCTTCCAATCCCCACTTCACTCCCTCAACCTCACTTCTAATCCCCAAACACTCTTTTAGAATCTTCCATAACTCCAATCGTTACACGCTCAAATCTTCTTCTTCTTCTTCTTCTTCTCATTCTTCTACAGCTACTTCTCCAAGCCCACCATCACTACCCAGCTCTTCATTTCTCGAAGCCCCACTCAGAACCGGCCGGTTTCTCAGCAATGAAGACCTCGAGAAGCTCAAGTCACTCGAGAATTTCAGGTACTATCAGGAACTGGAGTCCGGGTCGATGTGGGTTCGGGTCATGAGGTCGGAGGAGATGGACATCACTGTTGGGCTTTTGGCCGAGTCGTTTGCCGAGTCGATGCTTCTGCCTTCTGGTTATGTGGCTCTCTTGGGCTTCTTGGTCAAGCAGTACTTGATGGAACGAAGGGAGTTGATGCCCCACACCGCCACGCTTATTGGGTTTTACAGAAGCAACAAGGATGAGGCTAAAGATGAGAGCTTTGCGGGTAAAGGTGAGAGCTTTGAGGATAAAGGTGAGAGCTTTGAGGAGAAAGAAGGAGGCTTTGGAGGAGAAGATGAAGATGGGGTTTTGGCGGGGACTGTGGAGGTTTGCTTTGACAAGAAGGGTGCCAATGCTTCTACTCCTACGCCAACTCCGCCCAAGAATTCGCCTTATATAAGCAACATGGCTGTGAAGAAGTCGCTTCGGAGGAGGGGCATTGGCTGGCATCTTTTGAAGGCAAGTGAGGAATTGATTTCTCAGATGAGTTCTTCAAGAGAGGCGTACTTGCATTGCAGAATGATCGATGCAGCTCCATTCAACATGTATACAAAAGCAGGTTACAACATTGTAAAGACAGATAGCATTTTGATACTACTGACGTTGCAGAGGCGGAAACACTTAATGTACAAGAAACTTCCAGTCTTGACCAGCTTTTCAGAATCAGAAACTTTGTGTTCTGAAGAGGATGAAAATCACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

342

Amino Acids

38.23

Weight (kDa)

6.28

Isoelectric Point (pI)

61.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 194 - 296 4.8e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 872
AciI CCGC 6 cut(s) 43, 489, 548, 638, 701, 937
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 2 cut(s) 244, 381
AcsI RAATTY 2 cut(s) 292, 709
AcuI CTGAAG 1 cut(s) 1026
AfaI GTAC 4 cut(s) 302, 455, 830, 953
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 3 cut(s) 781, 819, 865
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 591, 623
AluBI AGCT 9 cut(s) 14, 182, 213, 277, 543, 564, 585, 857, 978
AluI AGCT 9 cut(s) 14, 182, 213, 277, 543, 564, 585, 857, 978
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 2 cut(s) 269, 287
AoxI GGCC 2 cut(s) 244, 381
ApeKI GCWGC 4 cut(s) 5, 8, 11, 854
ApoI RAATTY 2 cut(s) 292, 709
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 569, 590
AvaI CYCGRG 2 cut(s) 269, 287
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 20, 23, 866
BccI CCATC 5 cut(s) 54, 208, 352, 454, 620
BcgI CGANNNNNNTGC 6 cut(s) 374, 391, 408, 425, 829, 863
BcnI CCSGG 1 cut(s) 322
BfmI CTRYAG 2 cut(s) 6, 177
BfuAI ACCTGC 1 cut(s) 872
BisI GCNGC 4 cut(s) 6, 9, 12, 855
BlsI GCNGC 4 cut(s) 7, 10, 13, 856
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 322
BmeT110I CYCGRG 2 cut(s) 269, 287
BmiI GGNNCC 2 cut(s) 36, 673
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 4 cut(s) 393, 468, 781, 841
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 849
BsaBI GATNNNNATC 2 cut(s) 362, 1017
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 682, 712
Bse118I RCCGGY 2 cut(s) 242, 246
Bse1I ACTGG 2 cut(s) 318, 965
Bse3DI GCAATG 2 cut(s) 265, 835
Bse8I GATNNNNATC 2 cut(s) 362, 1017
BseCI ATCGAT 1 cut(s) 849
BseGI GGATG 2 cut(s) 529, 1018
BseJI GATNNNNATC 2 cut(s) 362, 1017
BseMI GCAATG 2 cut(s) 265, 835
BseMII CTCAG 3 cut(s) 250, 268, 818
BseNI ACTGG 2 cut(s) 318, 965
BseRI GAGGAG 4 cut(s) 368, 605, 627, 769
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 20, 23, 866
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 246, 383
BshNI GGYRCC 1 cut(s) 671
BshVI ATCGAT 1 cut(s) 849
BsiEI CGRYCG 1 cut(s) 247
BsiHKCI CYCGRG 2 cut(s) 269, 287
BsiSI CCGG 3 cut(s) 243, 247, 321
BslFI GGGAC 1 cut(s) 655
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 2 cut(s) 246, 383
BsoBI CYCGRG 2 cut(s) 269, 287
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 2 cut(s) 34, 846
BspACI CCGC 6 cut(s) 43, 489, 548, 638, 701, 937
BspANI GGCC 2 cut(s) 246, 383
BspCNI CTCAG 3 cut(s) 249, 267, 817
BspDI ATCGAT 1 cut(s) 849
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 36, 673
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 671
BsrDI GCAATG 2 cut(s) 265, 835
BsrFI RCCGGY 2 cut(s) 242, 246
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 2 cut(s) 318, 965
BssAI RCCGGY 2 cut(s) 242, 246
BssMI GATC 2 cut(s) 34, 846
BssNAI GTATAC 1 cut(s) 873
Bst1107I GTATAC 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 370, 646
Bst6I CTCTTC 3 cut(s) 58, 220, 1002
BstAUI TGTACA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 770
BstDEI CTNAG 3 cut(s) 236, 254, 804
BstF5I GGATG 2 cut(s) 529, 1018
BstKTI GATC 2 cut(s) 37, 849
BstMBI GATC 2 cut(s) 34, 846
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 11, 700
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 2 cut(s) 6, 177
BstV1I GCAGC 3 cut(s) 20, 23, 866
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 873
BstZI CGGCCG 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 849
BsuRI GGCC 2 cut(s) 246, 383
BsuTUI ATCGAT 1 cut(s) 849
BtsCI GGATG 2 cut(s) 529, 1018
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 770
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 342
Cfr10I RCCGGY 2 cut(s) 242, 246
ClaI ATCGAT 1 cut(s) 849
Csp6I GTAC 4 cut(s) 301, 454, 829, 952
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 343, 730, 868
CviQI GTAC 4 cut(s) 301, 454, 829, 952
DdeI CTNAG 3 cut(s) 236, 254, 804
DpnI GATC 2 cut(s) 36, 848
DpnII GATC 2 cut(s) 34, 846
EaeI YGGCCR 2 cut(s) 244, 381
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 58, 220, 1002
EarI CTCTTC 3 cut(s) 58, 220, 1002
EciI GGCGGA 2 cut(s) 690, 952
EclXI CGGCCG 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 1026
Eco88I CYCGRG 2 cut(s) 269, 287
EcoRI GAATTC 1 cut(s) 709
FaeI CATG 3 cut(s) 346, 733, 871
FaiI YATR 8 cut(s) 120, 344, 423, 720, 722, 731, 869, 873
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 655
FatI CATG 3 cut(s) 342, 729, 867
FauI CCCGC 2 cut(s) 541, 631
FblI GTMKAC 1 cut(s) 872
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 855
FokI GGATG 2 cut(s) 536, 1025
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 855
GluI GCNGC 4 cut(s) 6, 9, 12, 855
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 2 cut(s) 246, 383
HapII CCGG 3 cut(s) 243, 247, 321
Hin1II CATG 3 cut(s) 346, 733, 871
HinfI GANTC 5 cut(s) 111, 317, 386, 398, 986
HpaII CCGG 3 cut(s) 243, 247, 321
HphI GGTGA 2 cut(s) 569, 590
Hpy166II GTNNAC 1 cut(s) 873
Hpy188I TCNGA 7 cut(s) 239, 352, 753, 807, 985, 991, 1006
Hpy188III TCNNGA 7 cut(s) 224, 271, 289, 308, 343, 819, 970
Hpy8I GTNNAC 1 cut(s) 873
HpyAV CCTTC 5 cut(s) 423, 462, 593, 661, 775
HpyCH4III ACNGT 2 cut(s) 370, 646
HpyCH4IV ACGT 1 cut(s) 926
HpyCH4V TGCA 5 cut(s) 8, 835, 840, 854, 931
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 700
HpyF3I CTNAG 3 cut(s) 236, 254, 804
HpySE526I ACGT 1 cut(s) 926
Hsp92II CATG 3 cut(s) 346, 733, 871
Kzo9I GATC 2 cut(s) 34, 846
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 20, 23, 866
LweI GCATC 4 cut(s) 393, 468, 781, 841
MaeII ACGT 1 cut(s) 926
MaeIII GTNAC 3 cut(s) 131, 282, 884
MalI GATC 2 cut(s) 36, 848
MboI GATC 2 cut(s) 34, 846
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 292, 709, 794
MlyI GAGTC 3 cut(s) 326, 395, 407
MmeI TCCRAC 1 cut(s) 330
MseI TTAA 1 cut(s) 947
MslI CAYNNNNRTG 1 cut(s) 734
MspI CCGG 3 cut(s) 243, 247, 321
MspR9I CCNGG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 11, 700
NciI CCSGG 1 cut(s) 322
NdeII GATC 2 cut(s) 34, 846
NlaIII CATG 3 cut(s) 346, 733, 871
NlaIV GGNNCC 2 cut(s) 36, 673
NmeAIII GCCGAG 2 cut(s) 409, 421
NmuCI GTSAC 1 cut(s) 282
NspI RCATGY 1 cut(s) 871
PaeR7I CTCGAG 2 cut(s) 269, 287
PagI TCATGA 1 cut(s) 342
PciI ACATGT 1 cut(s) 867
PciSI GCTCTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 111, 986
PkrI GCNGC 4 cut(s) 7, 10, 13, 856
PleI GAGTC 3 cut(s) 325, 394, 406
PpsI GAGTC 3 cut(s) 325, 394, 406
PscI ACATGT 1 cut(s) 867
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 36, 673
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 4 cut(s) 302, 455, 830, 953
RsaNI GTAC 4 cut(s) 301, 454, 829, 952
RseI CAYNNNNRTG 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 947
SatI GCNGC 4 cut(s) 6, 9, 12, 855
Sau3AI GATC 2 cut(s) 34, 846
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 3 cut(s) 326, 395, 407
ScrFI CCNGG 1 cut(s) 322
SfaNI GCATC 4 cut(s) 393, 468, 781, 841
SfcI CTRYAG 2 cut(s) 6, 177
Sfr274I CTCGAG 2 cut(s) 269, 287
SlaI CTCGAG 2 cut(s) 269, 287
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 3 cut(s) 269, 278, 287
SmoI CTYRAG 3 cut(s) 269, 278, 287
Sse9I AATT 3 cut(s) 292, 709, 794
SsiI CCGC 6 cut(s) 43, 489, 548, 638, 701, 937
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 370, 646
TaiI ACGT 1 cut(s) 929
TaqI TCGA 6 cut(s) 225, 270, 288, 326, 401, 849
TasI AATT 3 cut(s) 292, 709, 794
TatI WGTACW 2 cut(s) 453, 951
TfiI GAWTC 2 cut(s) 111, 986
Tru1I TTAA 1 cut(s) 947
Tru9I TTAA 1 cut(s) 947
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 1 cut(s) 282
TseI GCWGC 4 cut(s) 5, 8, 11, 854
Tsp45I GTSAC 1 cut(s) 282
TspDTI ATGAA 4 cut(s) 207, 276, 636, 1029
TspRI CASTG 1 cut(s) 373
XapI RAATTY 2 cut(s) 292, 709
XceI RCATGY 1 cut(s) 871
XhoI CTCGAG 2 cut(s) 269, 287
XmiI GTMKAC 1 cut(s) 872
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.