Rorug04G0352000
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007183
Physical Location & Seq
Reverse (-)
52376624 .. 52378242
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0352000.1

Sequence Viewer

Length: 1098 bp
ATGAAAACCACACTACTACTACTTCTCCTTCTTGTATGTTCTTCATCTGTTTCATCATCAGATTCATCTCTAATATCCACTGCTGTTTGTGGGATCTTCACTTTCGGAGACTCCATCTTCGACGCTGGAAACAATCACTTCAACAAGAACTGCACTGTTCAAGCAGATTTCCCACCGTATGGCTCAAGCTTCTTCCACTACCCGACTGGCAGGTTCACTAATGGCAGAACTGTTGCTGATTTCATCTCACAATTCATCGGCATTCCTCTCCAAAAACCATATTATGAGGTACAAATTGAAGCTATGACTGGAAGCCGGAAAGGTTATCCTTCCGATGGCATTAACTTTGCTAGTGCCGGCAGCGGTGTTTTGCAAGGAACAAATAAAAATTTGGGAGTCACCTCACTCCAAGAACAATTACAACAATTCCAGACACTAGTGGAGCAAAACCACATTGGCAAAACTCTAGTTCAGAAATCCTTCTTCTTCTTCGAGTCTGGTTCCAACGACATCTTCAACTACTTTCTTCCATTTGCTCCCCCAACACTAGACCCGGATGCCTATGTCCAAGCCATGCTAACCCAAGTCACAAAATTCATAGACCAAATCTACATGCTTGGCACTCGCCGAATTGCTTTGTTTTCACTAGGGCCTGTTGGGTGTGCTCCAGCCAGGGCACTCCTGCCAGGTGCACCCATTAATCGATGTTTCGGAAAGATGAACTTGATGGTTAAGAAGTACAACAAGGGACTGGAATGTTTGGTCAATGATATGCCTATCAAGTACCCCGGGGTGGTGGGTGTTTATGGAGAAACCTATGACATTGTTCAGCGATTTCGAGCCATTCCTACACGTTACCATTTTTCGGACGTATCGAGTGCATGTTGCGGCGGAGGTACTCTAGGAGGATTGCTGCAATGTGGGAAGAAGGGATACAAGACATGTGCAAACCCTAATGAGTTCTTATTCTGGGATTACTTCCATCCATCAGAGCATGCTTACAGGATCATATCCAAGGCCTTGTGGGGTGGAAAGAAATATCGAATTAGACCACTTAATTTGAAGGCTCTAGCCAACATCACCCTCACTCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

365

Amino Acids

40.32

Weight (kDa)

9.12

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 32 - 341 1.9e-32 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 179
AciI CCGC 3 cut(s) 363, 888, 891
AclWI GGATC 2 cut(s) 101, 1013
AcsI RAATTY 2 cut(s) 388, 593
AfaI GTAC 4 cut(s) 291, 740, 785, 898
AfiI CCNNNNNNNGG 4 cut(s) 179, 335, 793, 865
AflIII ACRYGT 2 cut(s) 851, 941
AgsI TTSAA 5 cut(s) 142, 161, 299, 517, 1063
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 2 cut(s) 671, 685
AjuI GAANNNNNNNTTGG 2 cut(s) 497, 529
AluBI AGCT 2 cut(s) 189, 302
AluI AGCT 2 cut(s) 189, 302
Alw21I GWGCWC 2 cut(s) 667, 694
Alw26I GTCTC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 690
AlwI GGATC 2 cut(s) 101, 1013
Ama87I CYCGRG 1 cut(s) 788
AoxI GGCC 2 cut(s) 650, 1017
ApaLI GTGCAC 1 cut(s) 690
ApeKI GCWGC 2 cut(s) 360, 913
ApoI RAATTY 2 cut(s) 388, 593
ArsI GACNNNNNNTTYG 2 cut(s) 101, 133
AseI ATTAAT 1 cut(s) 699
Asp700I GAANNNNTTC 1 cut(s) 479
AspS9I GGNCC 1 cut(s) 650
AsuC2I CCSGG 3 cut(s) 554, 789, 790
AsuHPI GGTGA 2 cut(s) 391, 1072
AvaI CYCGRG 1 cut(s) 788
BaeGI GKGCMC 2 cut(s) 679, 694
BarI GAAGNNNNNNTAC 2 cut(s) 917, 949
BauI CACGAG 1 cut(s) 1089
Bbv12I GWGCWC 2 cut(s) 667, 694
BbvI GCAGC 2 cut(s) 372, 900
BccI CCATC 5 cut(s) 122, 329, 721, 990, 994
BciT130I CCWGG 2 cut(s) 673, 687
BciVI GTATCC 1 cut(s) 926
BcnI CCSGG 3 cut(s) 554, 789, 790
BcoDI GTCTC 1 cut(s) 102
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 7 cut(s) 351, 437, 467, 548, 647, 902, 1070
BfuAI ACCTGC 1 cut(s) 201
BfuI GTATCC 1 cut(s) 926
BisI GCNGC 3 cut(s) 361, 889, 914
BlsI GCNGC 3 cut(s) 362, 890, 915
Bme1390I CCNGG 5 cut(s) 554, 673, 687, 789, 790
BmeT110I CYCGRG 1 cut(s) 788
BmgT120I GGNCC 1 cut(s) 650
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 5 cut(s) 554, 673, 687, 789, 790
BmsI GCATC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 651
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 3 cut(s) 554, 789, 790
Bsa29I ATCGAT 1 cut(s) 703
BsaJI CCNNGG 5 cut(s) 672, 787, 788, 789, 1014
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 4 cut(s) 179, 335, 793, 865
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 211, 313, 756
Bse3DI GCAATG 1 cut(s) 923
BseBI CCWGG 2 cut(s) 673, 687
BseCI ATCGAT 1 cut(s) 703
BseDI CCNNGG 5 cut(s) 672, 787, 788, 789, 1014
BseGI GGATG 2 cut(s) 562, 982
BseLI CCNNNNNNNGG 4 cut(s) 179, 335, 793, 865
BseMI GCAATG 1 cut(s) 923
BseNI ACTGG 3 cut(s) 211, 313, 756
BseSI GKGCMC 2 cut(s) 679, 694
BseXI GCAGC 2 cut(s) 372, 900
BsgI GTGCAG 1 cut(s) 136
BshFI GGCC 2 cut(s) 652, 1019
BshVI ATCGAT 1 cut(s) 703
BsiHKAI GWGCWC 2 cut(s) 667, 694
BsiHKCI CYCGRG 1 cut(s) 788
BsiSI CCGG 4 cut(s) 316, 357, 554, 789
BslFI GGGAC 1 cut(s) 762
BslI CCNNNNNNNGG 4 cut(s) 179, 335, 793, 865
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 762
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 2 cut(s) 652, 1019
BsoBI CYCGRG 1 cut(s) 788
Bsp1286I GDGCHC 3 cut(s) 667, 679, 694
Bsp143I GATC 2 cut(s) 93, 1005
BspACI CCGC 3 cut(s) 363, 888, 891
BspANI GGCC 2 cut(s) 652, 1019
BspDI ATCGAT 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 201
BspPI GGATC 2 cut(s) 101, 1013
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 211, 313, 756
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 5 cut(s) 672, 787, 788, 789, 1014
BssMI GATC 2 cut(s) 93, 1005
BssSI CACGAG 1 cut(s) 1089
BssT1I CCWWGG 1 cut(s) 1014
Bst2BI CACGAG 1 cut(s) 1089
Bst2UI CCWGG 2 cut(s) 673, 687
Bst4CI ACNGT 3 cut(s) 157, 177, 232
BstC8I GCNNGC 2 cut(s) 358, 996
BstF5I GGATG 2 cut(s) 562, 982
BstKTI GATC 2 cut(s) 96, 1008
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 2 cut(s) 93, 1005
BstNI CCWGG 2 cut(s) 673, 687
BstNSI RCATGY 4 cut(s) 616, 885, 945, 998
BstSCI CCNGG 5 cut(s) 552, 671, 685, 787, 788
BstSLI GKGCMC 2 cut(s) 679, 694
BstV1I GCAGC 2 cut(s) 372, 900
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 703
BsuI GTATCC 1 cut(s) 926
BsuRI GGCC 2 cut(s) 652, 1019
BsuTUI ATCGAT 1 cut(s) 703
BtsCI GGATG 2 cut(s) 562, 982
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 153
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 358, 996
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 650
Cfr9I CCCGGG 1 cut(s) 788
ClaI ATCGAT 1 cut(s) 703
CseI GACGC 1 cut(s) 131
Csp6I GTAC 4 cut(s) 290, 739, 784, 897
CspCI CAANNNNNGTGG 2 cut(s) 1041, 1076
CviAII CATG 5 cut(s) 574, 613, 882, 942, 995
CviQI GTAC 4 cut(s) 290, 739, 784, 897
DpnI GATC 2 cut(s) 95, 1007
DpnII GATC 2 cut(s) 93, 1005
EciI GGCGGA 1 cut(s) 906
Eco130I CCWWGG 1 cut(s) 1014
Eco147I AGGCCT 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 788
EcoO109I RGGNCCY 1 cut(s) 650
EcoRII CCWGG 2 cut(s) 671, 685
EcoT14I CCWWGG 1 cut(s) 1014
ErhI CCWWGG 1 cut(s) 1014
FaeI CATG 5 cut(s) 577, 616, 885, 945, 998
FalI AAGNNNNNCTT 2 cut(s) 707, 739
FaqI GGGAC 1 cut(s) 762
FatI CATG 5 cut(s) 573, 612, 881, 941, 994
Fnu4HI GCNGC 3 cut(s) 361, 889, 914
FokI GGATG 2 cut(s) 569, 969
Fsp4HI GCNGC 3 cut(s) 361, 889, 914
FspBI CTAG 7 cut(s) 351, 437, 467, 548, 647, 902, 1070
GluI GCNGC 3 cut(s) 361, 889, 914
GsuI CTGGAG 1 cut(s) 651
HaeIII GGCC 2 cut(s) 652, 1019
HapII CCGG 4 cut(s) 316, 357, 554, 789
HgaI GACGC 1 cut(s) 131
Hin1II CATG 5 cut(s) 577, 616, 885, 945, 998
HindIII AAGCTT 1 cut(s) 187
HinfI GANTC 4 cut(s) 62, 110, 396, 494
HpaII CCGG 4 cut(s) 316, 357, 554, 789
HphI GGTGA 2 cut(s) 391, 1072
Hpy166II GTNNAC 2 cut(s) 216, 692
Hpy188I TCNGA 7 cut(s) 61, 107, 334, 474, 713, 868, 991
Hpy188III TCNNGA 1 cut(s) 430
Hpy8I GTNNAC 2 cut(s) 216, 692
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 5 cut(s) 38, 339, 490, 922, 1057
HpyCH4III ACNGT 3 cut(s) 157, 177, 232
HpyCH4IV ACGT 2 cut(s) 853, 870
HpyCH4V TGCA 6 cut(s) 153, 373, 692, 881, 916, 947
HpySE526I ACGT 2 cut(s) 853, 870
Hsp92II CATG 5 cut(s) 577, 616, 885, 945, 998
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 93, 1005
LmnI GCTCC 3 cut(s) 442, 541, 670
Lsp1109I GCAGC 2 cut(s) 372, 900
LweI GCATC 1 cut(s) 547
MaeI CTAG 7 cut(s) 351, 437, 467, 548, 647, 902, 1070
MaeII ACGT 2 cut(s) 853, 870
MaeIII GTNAC 3 cut(s) 397, 586, 854
MalI GATC 2 cut(s) 95, 1007
MboI GATC 2 cut(s) 93, 1005
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 3 cut(s) 667, 679, 694
MluCI AATT 9 cut(s) 251, 294, 388, 416, 425, 593, 630, 1044, 1057
MlyI GAGTC 3 cut(s) 104, 405, 503
MmeI TCCRAC 1 cut(s) 528
MnlI CCTC 6 cut(s) 276, 280, 412, 887, 899, 1094
MroNI GCCGGC 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 479
MseI TTAA 4 cut(s) 342, 699, 732, 1056
MspA1I CMGCKG 1 cut(s) 363
MspI CCGG 4 cut(s) 316, 357, 554, 789
MspR9I CCNGG 5 cut(s) 554, 673, 687, 789, 790
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 2 cut(s) 673, 687
NaeI GCCGGC 1 cut(s) 358
NciI CCSGG 3 cut(s) 554, 789, 790
NdeII GATC 2 cut(s) 93, 1005
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 5 cut(s) 577, 616, 885, 945, 998
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 2 cut(s) 397, 586
NspI RCATGY 4 cut(s) 616, 885, 945, 998
PaeI GCATGC 1 cut(s) 998
PceI AGGCCT 1 cut(s) 1019
PciI ACATGT 1 cut(s) 941
PcsI WCGNNNNNNNCGW 1 cut(s) 872
PctI GAATGC 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 3 cut(s) 362, 890, 915
PleI GAGTC 3 cut(s) 104, 404, 502
PpsI GAGTC 3 cut(s) 104, 404, 502
PscI ACATGT 1 cut(s) 941
PshBI ATTAAT 1 cut(s) 699
Psp6I CCWGG 2 cut(s) 671, 685
PspGI CCWGG 2 cut(s) 671, 685
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 1 cut(s) 650
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 4 cut(s) 291, 740, 785, 898
RsaNI GTAC 4 cut(s) 290, 739, 784, 897
SaqAI TTAA 4 cut(s) 342, 699, 732, 1056
SatI GCNGC 3 cut(s) 361, 889, 914
Sau3AI GATC 2 cut(s) 93, 1005
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 3 cut(s) 104, 405, 503
ScrFI CCNGG 5 cut(s) 554, 673, 687, 789, 790
SduI GDGCHC 3 cut(s) 667, 679, 694
SfaNI GCATC 1 cut(s) 547
SmaI CCCGGG 1 cut(s) 790
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
SpeI ACTAGT 1 cut(s) 436
SphI GCATGC 1 cut(s) 998
Sse9I AATT 9 cut(s) 251, 294, 388, 416, 425, 593, 630, 1044, 1057
SseBI AGGCCT 1 cut(s) 1019
SsiI CCGC 3 cut(s) 363, 888, 891
SspMI CTAG 7 cut(s) 351, 437, 467, 548, 647, 902, 1070
StuI AGGCCT 1 cut(s) 1019
StyD4I CCNGG 5 cut(s) 552, 671, 685, 787, 788
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 3 cut(s) 157, 177, 232
TaiI ACGT 2 cut(s) 856, 873
TaqI TCGA 6 cut(s) 120, 492, 703, 838, 875, 1042
TasI AATT 9 cut(s) 251, 294, 388, 416, 425, 593, 630, 1044, 1057
TatI WGTACW 1 cut(s) 738
TauI GCSGC 1 cut(s) 891
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 4 cut(s) 342, 699, 732, 1056
Tru9I TTAA 4 cut(s) 342, 699, 732, 1056
TscAI CASTG 2 cut(s) 85, 160
TseFI GTSAC 2 cut(s) 397, 586
TseI GCWGC 2 cut(s) 360, 913
Tsp45I GTSAC 2 cut(s) 397, 586
TspDTI ATGAA 8 cut(s) 17, 33, 42, 54, 232, 244, 586, 734
TspMI CCCGGG 1 cut(s) 788
TspRI CASTG 2 cut(s) 85, 160
Van91I CCANNNNNTGG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 690
VspI ATTAAT 1 cut(s) 699
XapI RAATTY 2 cut(s) 388, 593
XceI RCATGY 4 cut(s) 616, 885, 945, 998
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmaI CCCGGG 1 cut(s) 788
XmnI GAANNNNTTC 1 cut(s) 479
XspI CTAG 7 cut(s) 351, 437, 467, 548, 647, 902, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.