Rroxscaffold_5G00384890
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007183
Physical Location & Seq
Reverse (-)
64102671 .. 64104918
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384890.1

Sequence Viewer

Length: 1050 bp
ATGGCTGCAGCAGCTTCACTCTCTTTCTCTTTGGATCCACACCGCCATCTCTCTTCCAATCCCCACTTCACTCCCTCAACCTCACTTCTAATCCCAAAGCACTCTTTTAGAATCTTCCATAACTCCAATCGTTACACTCTCAAATCTTCTTCTTCTTCTTCTTCTTCTCATTCTTCTACAGCTACTTCTCCAAGCCCACCATCACTACCCAGCTCTTCATTTCTCGAAGCCCCACTCAGAACCGGCCGGTTTCTGAGCAATGAAGACCTCGACAAGCTCAAGTCTCTCGAGAATTTCAGGTACTATCAGGAACTGGAGTCCGGGTCGATGTGGGTTCGGGTCATGAGGTCGGAGGAGATGGACATCACTGTTGGGCTTTTGGCCGAGTCGTTTGCCGAGTCGATGCTTCTGCCTTCTGGGTATGTGGCTCTCTTGGGCTTCTTGGTCAAGCAGTACTTGATGGAGCGAAGGGAGTTGATGCCCCACACCGCCACGCTTATTGGGTTTTACAGAAGCAACAAGGATGAGGCTAAAGATGAGAGCTTTGAGGTTAAAGATGAGAGCTTTGAGGGTACAGGTGTGAGCTTTGAGGGTGAAGGTGAGAGCTTTGAGGAGAAAGATGGAGGCTTTGGAGGAGAAGATGAAGATGGGGTTTTGGCGGGGACTGTGGAGGTTTGCTTTGACAAGAAGGGTTCCAATGCTTCTACTCCTACGCCAACTCCGCCCAAGAATTCGCCTTATATAAGCAACATGGCTGTGAAGAAGTCGCTTCGGAGGAGGGGCATTGGCTGGCATCTTTTGAAGGCAAGTGAGGAATTGATTTCTCAGATGAGTTCTTCAAGAGAGGCGTACTTGCATTGCAGAATGATCGATGCTGCTCCATTCAACATGTATACAAAAGCAGGTTACAACATTGTAAAGACAGATAGCATTTTGATACTACTGACGTTGCAGAGGCGGAAACACTTAATGTACAAGAAACTTCCAGTCTTGACCAGCTTTTCAGAATCAGAAACTTTGTGTTCTGAAGAGGATGAAAATCACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

349

Amino Acids

39.0

Weight (kDa)

5.82

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 203 - 303 1e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 893
AccI GTMKAC 1 cut(s) 893
AciI CCGC 5 cut(s) 43, 489, 659, 722, 958
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 2 cut(s) 244, 381
AcsI RAATTY 2 cut(s) 292, 730
AcuI CTGAAG 1 cut(s) 1047
AfaI GTAC 5 cut(s) 302, 455, 574, 851, 974
AflIII ACRYGT 1 cut(s) 888
AgsI TTSAA 3 cut(s) 802, 840, 886
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 9 cut(s) 14, 182, 213, 277, 543, 564, 585, 606, 999
AluI AGCT 9 cut(s) 14, 182, 213, 277, 543, 564, 585, 606, 999
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 287
AoxI GGCC 2 cut(s) 244, 381
ApeKI GCWGC 4 cut(s) 5, 8, 11, 875
ApoI RAATTY 2 cut(s) 292, 730
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 605, 611
AvaI CYCGRG 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BamHI GGATCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 20, 23, 862
BccI CCATC 6 cut(s) 54, 208, 352, 454, 614, 641
BcgI CGANNNNNNTGC 6 cut(s) 374, 391, 408, 425, 850, 884
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 6, 177
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 4 cut(s) 6, 9, 12, 876
BlsI GCNGC 4 cut(s) 7, 10, 13, 877
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 36, 694
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 4 cut(s) 393, 468, 802, 862
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 870
BsaBI GATNNNNATC 2 cut(s) 362, 1038
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 703, 733
Bse118I RCCGGY 2 cut(s) 242, 246
Bse1I ACTGG 2 cut(s) 318, 986
Bse3DI GCAATG 2 cut(s) 265, 856
Bse8I GATNNNNATC 2 cut(s) 362, 1038
BseCI ATCGAT 1 cut(s) 870
BseGI GGATG 2 cut(s) 529, 1039
BseJI GATNNNNATC 2 cut(s) 362, 1038
BseMI GCAATG 2 cut(s) 265, 856
BseMII CTCAG 3 cut(s) 245, 250, 839
BseNI ACTGG 2 cut(s) 318, 986
BseRI GAGGAG 4 cut(s) 368, 626, 648, 790
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 20, 23, 862
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 2 cut(s) 246, 383
BshVI ATCGAT 1 cut(s) 870
BsiEI CGRYCG 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 3 cut(s) 243, 247, 321
BslFI GGGAC 1 cut(s) 676
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 2 cut(s) 246, 383
BsoBI CYCGRG 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 972
Bsp143I GATC 2 cut(s) 34, 867
BspACI CCGC 5 cut(s) 43, 489, 659, 722, 958
BspANI GGCC 2 cut(s) 246, 383
BspCNI CTCAG 3 cut(s) 246, 249, 838
BspDI ATCGAT 1 cut(s) 870
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 36, 694
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 893
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 220
BsrDI GCAATG 2 cut(s) 265, 856
BsrFI RCCGGY 2 cut(s) 242, 246
BsrGI TGTACA 1 cut(s) 972
BsrI ACTGG 2 cut(s) 318, 986
BssAI RCCGGY 2 cut(s) 242, 246
BssMI GATC 2 cut(s) 34, 867
BssNAI GTATAC 1 cut(s) 894
Bst1107I GTATAC 1 cut(s) 894
Bst4CI ACNGT 2 cut(s) 370, 667
Bst6I CTCTTC 3 cut(s) 58, 220, 1023
BstAUI TGTACA 1 cut(s) 972
BstC8I GCNNGC 1 cut(s) 791
BstDEI CTNAG 3 cut(s) 236, 254, 825
BstF5I GGATG 2 cut(s) 529, 1039
BstKTI GATC 2 cut(s) 37, 870
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 34, 867
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 11, 721
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 2 cut(s) 6, 177
BstV1I GCAGC 3 cut(s) 20, 23, 862
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 894
BstZI CGGCCG 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 870
BsuRI GGCC 2 cut(s) 246, 383
BsuTUI ATCGAT 1 cut(s) 870
BtsCI GGATG 2 cut(s) 529, 1039
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 1 cut(s) 791
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 342
Cfr10I RCCGGY 2 cut(s) 242, 246
ClaI ATCGAT 1 cut(s) 870
Csp6I GTAC 5 cut(s) 301, 454, 573, 850, 973
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 343, 751, 889
CviQI GTAC 5 cut(s) 301, 454, 573, 850, 973
DdeI CTNAG 3 cut(s) 236, 254, 825
DpnI GATC 2 cut(s) 36, 869
DpnII GATC 2 cut(s) 34, 867
EaeI YGGCCR 2 cut(s) 244, 381
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 58, 220, 1023
EarI CTCTTC 3 cut(s) 58, 220, 1023
EciI GGCGGA 2 cut(s) 711, 973
EclXI CGGCCG 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 1047
Eco88I CYCGRG 1 cut(s) 287
EcoRI GAATTC 1 cut(s) 730
FaeI CATG 3 cut(s) 346, 754, 892
FaiI YATR 8 cut(s) 120, 344, 423, 741, 743, 752, 890, 894
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 676
FatI CATG 3 cut(s) 342, 750, 888
FauI CCCGC 1 cut(s) 652
FblI GTMKAC 1 cut(s) 893
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 876
FokI GGATG 2 cut(s) 536, 1046
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 876
GluI GCNGC 4 cut(s) 6, 9, 12, 876
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 2 cut(s) 246, 383
HapII CCGG 3 cut(s) 243, 247, 321
Hin1II CATG 3 cut(s) 346, 754, 892
HinfI GANTC 5 cut(s) 111, 317, 386, 398, 1007
HpaII CCGG 3 cut(s) 243, 247, 321
HphI GGTGA 2 cut(s) 605, 611
Hpy166II GTNNAC 1 cut(s) 894
Hpy188I TCNGA 8 cut(s) 239, 255, 352, 774, 828, 1006, 1012, 1027
Hpy188III TCNNGA 7 cut(s) 224, 287, 289, 308, 343, 840, 991
Hpy8I GTNNAC 1 cut(s) 894
HpyAV CCTTC 5 cut(s) 423, 462, 590, 682, 796
HpyCH4III ACNGT 2 cut(s) 370, 667
HpyCH4IV ACGT 1 cut(s) 947
HpyCH4V TGCA 4 cut(s) 8, 856, 861, 952
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 721
HpyF3I CTNAG 3 cut(s) 236, 254, 825
HpySE526I ACGT 1 cut(s) 947
Hsp92II CATG 3 cut(s) 346, 754, 892
Kzo9I GATC 2 cut(s) 34, 867
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 2 cut(s) 463, 883
Lsp1109I GCAGC 3 cut(s) 20, 23, 862
LweI GCATC 4 cut(s) 393, 468, 802, 862
MaeII ACGT 1 cut(s) 947
MaeIII GTNAC 2 cut(s) 131, 905
MalI GATC 2 cut(s) 36, 869
MboI GATC 2 cut(s) 34, 867
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 292, 730, 815
MlyI GAGTC 3 cut(s) 326, 395, 407
MmeI TCCRAC 1 cut(s) 330
MseI TTAA 2 cut(s) 552, 968
MslI CAYNNNNRTG 1 cut(s) 755
MspI CCGG 3 cut(s) 243, 247, 321
MspR9I CCNGG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 11, 721
NciI CCSGG 1 cut(s) 322
NdeII GATC 2 cut(s) 34, 867
NlaIII CATG 3 cut(s) 346, 754, 892
NlaIV GGNNCC 2 cut(s) 36, 694
NmeAIII GCCGAG 2 cut(s) 409, 421
NspI RCATGY 1 cut(s) 892
PaeR7I CTCGAG 1 cut(s) 287
PagI TCATGA 1 cut(s) 342
PciI ACATGT 1 cut(s) 888
PciSI GCTCTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 111, 1007
PkrI GCNGC 4 cut(s) 7, 10, 13, 877
PleI GAGTC 3 cut(s) 325, 394, 406
PpsI GAGTC 3 cut(s) 325, 394, 406
PscI ACATGT 1 cut(s) 888
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 36, 694
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 5 cut(s) 302, 455, 574, 851, 974
RsaNI GTAC 5 cut(s) 301, 454, 573, 850, 973
RseI CAYNNNNRTG 1 cut(s) 755
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 2 cut(s) 552, 968
SatI GCNGC 4 cut(s) 6, 9, 12, 876
Sau3AI GATC 2 cut(s) 34, 867
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 3 cut(s) 326, 395, 407
ScrFI CCNGG 1 cut(s) 322
SfaNI GCATC 4 cut(s) 393, 468, 802, 862
SfcI CTRYAG 2 cut(s) 6, 177
Sfr274I CTCGAG 1 cut(s) 287
SlaI CTCGAG 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 2 cut(s) 278, 287
SmoI CTYRAG 2 cut(s) 278, 287
Sse9I AATT 3 cut(s) 292, 730, 815
SsiI CCGC 5 cut(s) 43, 489, 659, 722, 958
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 370, 667
TaiI ACGT 1 cut(s) 950
TaqI TCGA 6 cut(s) 225, 270, 288, 326, 401, 870
TasI AATT 3 cut(s) 292, 730, 815
TatI WGTACW 2 cut(s) 453, 972
TfiI GAWTC 2 cut(s) 111, 1007
Tru1I TTAA 2 cut(s) 552, 968
Tru9I TTAA 2 cut(s) 552, 968
TscAI CASTG 1 cut(s) 373
TseI GCWGC 4 cut(s) 5, 8, 11, 875
TspDTI ATGAA 4 cut(s) 207, 276, 657, 1050
TspRI CASTG 1 cut(s) 373
XapI RAATTY 2 cut(s) 292, 730
XceI RCATGY 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 893
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.