Rmu_sc0002841.1_g000010
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002841.1
OG0007183
Physical Location & Seq
Forward (+)
62930 .. 64515
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002841.1_g000010.1.cds

Sequence Viewer

Length: 1029 bp
atggctgcagcagcttcactctctttctctttggatccacaccgccatctctcttccaatccccacttcactccctcaacctcacttctaatccccaaacactcttttagaatcttccataactccaatcgttgcactctcaaatcttcttcttcttcttcttcttctcattcttctacagctacttctccaagcccaccatcactacccagctcttcatttctcgaagccccactcagaaccggccggtttctcagcaatgaagacctcgagaagctcaagtcgctcgagaatttcaggtactatcaggaactggagtccgggtcgatgtgggttcgggtcatgaggtcggaggagatggacatcactgttgggcttttgtccgagtcgtttgccgagtcgatgcttctgccttctggttatgtggctctcttgggcttcttggtcaagcagtacttgatggaacgaagggagttgatgccccacaccgccacgcttattgggttttacagaagcaacaaggatgaggctaaagatgagagctttgggggtaaaggtgagagctttgaggataaaggtgagagctttgaggagaaagatggaggctttggaggagaagatgaagatggggttttggcggggactgtggaggtttgctttgacaagaagggtgccaatgcttctactcctacgccaactccgcccaagaattcgccttatataagcaacatggctgtgaagaagtcgcttcggaggaggggcattggctggcatcttttgaaggcaagtgaggaattgatttctcagatgagttcttcaagagaggcgtacttgcattgcagaatgatcgatgcagctccattcaacatgtatacaaaagcaggttacaacattgtaaagacagatagcattttgatactactgacgttgcagaggcggaaacacttaatgtacaagaaacttccagtcttgaccagcttttcagaatcagaaactttgtgttctgaagaggatgaaaatcactattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

342

Amino Acids

38.16

Weight (kDa)

6.28

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 671
AccI GTMKAC 1 cut(s) 872
AciI CCGC 5 cut(s) 43, 489, 638, 701, 937
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 292, 709
AcuI CTGAAG 1 cut(s) 1026
AfaI GTAC 4 cut(s) 302, 455, 830, 953
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 3 cut(s) 781, 819, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 9 cut(s) 14, 182, 213, 277, 543, 564, 585, 857, 978
AluI AGCT 9 cut(s) 14, 182, 213, 277, 543, 564, 585, 857, 978
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 2 cut(s) 269, 287
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 4 cut(s) 5, 8, 11, 854
ApoI RAATTY 2 cut(s) 292, 709
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 569, 590
AvaI CYCGRG 2 cut(s) 269, 287
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 671
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 3 cut(s) 20, 23, 866
BccI CCATC 6 cut(s) 54, 208, 352, 454, 593, 620
BcgI CGANNNNNNTGC 6 cut(s) 374, 391, 408, 425, 829, 863
BcnI CCSGG 1 cut(s) 322
BfmI CTRYAG 2 cut(s) 6, 177
BfuAI ACCTGC 1 cut(s) 872
BisI GCNGC 4 cut(s) 6, 9, 12, 855
BlsI GCNGC 4 cut(s) 7, 10, 13, 856
BmcAI AGTACT 1 cut(s) 455
Bme1390I CCNGG 1 cut(s) 322
BmeT110I CYCGRG 2 cut(s) 269, 287
BmiI GGNNCC 2 cut(s) 36, 673
BmrFI CCNGG 1 cut(s) 322
BmsI GCATC 4 cut(s) 393, 468, 781, 841
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 849
BsaBI GATNNNNATC 2 cut(s) 362, 1017
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 682, 712
Bse118I RCCGGY 2 cut(s) 242, 246
Bse1I ACTGG 2 cut(s) 318, 965
Bse3DI GCAATG 2 cut(s) 265, 835
Bse8I GATNNNNATC 2 cut(s) 362, 1017
BseCI ATCGAT 1 cut(s) 849
BseGI GGATG 2 cut(s) 529, 1018
BseJI GATNNNNATC 2 cut(s) 362, 1017
BseMI GCAATG 2 cut(s) 265, 835
BseMII CTCAG 3 cut(s) 250, 268, 818
BseNI ACTGG 2 cut(s) 318, 965
BseRI GAGGAG 4 cut(s) 368, 605, 627, 769
BseX3I CGGCCG 1 cut(s) 244
BseXI GCAGC 3 cut(s) 20, 23, 866
BseYI CCCAGC 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 671
BshVI ATCGAT 1 cut(s) 849
BsiEI CGRYCG 1 cut(s) 247
BsiHKCI CYCGRG 2 cut(s) 269, 287
BsiSI CCGG 3 cut(s) 243, 247, 321
BslFI GGGAC 1 cut(s) 655
BsmFI GGGAC 1 cut(s) 655
BsnI GGCC 1 cut(s) 246
BsoBI CYCGRG 2 cut(s) 269, 287
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 2 cut(s) 34, 846
BspACI CCGC 5 cut(s) 43, 489, 638, 701, 937
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 3 cut(s) 249, 267, 817
BspDI ATCGAT 1 cut(s) 849
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 36, 673
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 220
BspT107I GGYRCC 1 cut(s) 671
BsrDI GCAATG 2 cut(s) 265, 835
BsrFI RCCGGY 2 cut(s) 242, 246
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 2 cut(s) 318, 965
BssAI RCCGGY 2 cut(s) 242, 246
BssMI GATC 2 cut(s) 34, 846
BssNAI GTATAC 1 cut(s) 873
Bst1107I GTATAC 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 370, 646
Bst6I CTCTTC 3 cut(s) 58, 220, 1002
BstAUI TGTACA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 770
BstDEI CTNAG 3 cut(s) 236, 254, 804
BstF5I GGATG 2 cut(s) 529, 1018
BstKTI GATC 2 cut(s) 37, 849
BstMBI GATC 2 cut(s) 34, 846
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 11, 283, 700
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 2 cut(s) 6, 177
BstV1I GCAGC 3 cut(s) 20, 23, 866
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 873
BstZI CGGCCG 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 849
BsuRI GGCC 1 cut(s) 246
BsuTUI ATCGAT 1 cut(s) 849
BtsCI GGATG 2 cut(s) 529, 1018
BtsIMutI CAGTG 1 cut(s) 366
BveI ACCTGC 1 cut(s) 872
Cac8I GCNNGC 1 cut(s) 770
CaiI CAGNNNCTG 1 cut(s) 313
CciI TCATGA 1 cut(s) 342
Cfr10I RCCGGY 2 cut(s) 242, 246
ClaI ATCGAT 1 cut(s) 849
Csp6I GTAC 4 cut(s) 301, 454, 829, 952
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 3 cut(s) 343, 730, 868
CviQI GTAC 4 cut(s) 301, 454, 829, 952
DdeI CTNAG 3 cut(s) 236, 254, 804
DpnI GATC 2 cut(s) 36, 848
DpnII GATC 2 cut(s) 34, 846
EaeI YGGCCR 1 cut(s) 244
EagI CGGCCG 1 cut(s) 244
Eam1104I CTCTTC 3 cut(s) 58, 220, 1002
EarI CTCTTC 3 cut(s) 58, 220, 1002
EciI GGCGGA 2 cut(s) 690, 952
EclXI CGGCCG 1 cut(s) 244
Eco52I CGGCCG 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 1026
Eco88I CYCGRG 2 cut(s) 269, 287
EcoRI GAATTC 1 cut(s) 709
FaeI CATG 3 cut(s) 346, 733, 871
FaiI YATR 8 cut(s) 120, 344, 423, 720, 722, 731, 869, 873
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 1 cut(s) 655
FatI CATG 3 cut(s) 342, 729, 867
FauI CCCGC 1 cut(s) 631
FblI GTMKAC 1 cut(s) 872
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 855
FokI GGATG 2 cut(s) 536, 1025
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 855
GluI GCNGC 4 cut(s) 6, 9, 12, 855
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 1 cut(s) 246
HapII CCGG 3 cut(s) 243, 247, 321
Hin1II CATG 3 cut(s) 346, 733, 871
HinfI GANTC 5 cut(s) 111, 317, 386, 398, 986
HpaII CCGG 3 cut(s) 243, 247, 321
HphI GGTGA 2 cut(s) 569, 590
Hpy166II GTNNAC 1 cut(s) 873
Hpy188I TCNGA 8 cut(s) 239, 352, 385, 753, 807, 985, 991, 1006
Hpy188III TCNNGA 7 cut(s) 224, 271, 289, 308, 343, 819, 970
Hpy8I GTNNAC 1 cut(s) 873
HpyAV CCTTC 4 cut(s) 423, 462, 661, 775
HpyCH4III ACNGT 2 cut(s) 370, 646
HpyCH4IV ACGT 1 cut(s) 926
HpyCH4V TGCA 6 cut(s) 8, 135, 835, 840, 854, 931
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 283, 700
HpyF3I CTNAG 3 cut(s) 236, 254, 804
HpySE526I ACGT 1 cut(s) 926
Hsp92II CATG 3 cut(s) 346, 733, 871
Kzo9I GATC 2 cut(s) 34, 846
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 20, 23, 866
LweI GCATC 4 cut(s) 393, 468, 781, 841
MaeII ACGT 1 cut(s) 926
MaeIII GTNAC 1 cut(s) 884
MalI GATC 2 cut(s) 36, 848
MboI GATC 2 cut(s) 34, 846
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 292, 709, 794
MlyI GAGTC 3 cut(s) 326, 395, 407
MmeI TCCRAC 1 cut(s) 330
MseI TTAA 1 cut(s) 947
MslI CAYNNNNRTG 1 cut(s) 734
MspI CCGG 3 cut(s) 243, 247, 321
MspR9I CCNGG 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 11, 283, 700
NciI CCSGG 1 cut(s) 322
NdeII GATC 2 cut(s) 34, 846
NlaIII CATG 3 cut(s) 346, 733, 871
NlaIV GGNNCC 2 cut(s) 36, 673
NmeAIII GCCGAG 1 cut(s) 421
NspI RCATGY 1 cut(s) 871
PaeR7I CTCGAG 2 cut(s) 269, 287
PagI TCATGA 1 cut(s) 342
PciI ACATGT 1 cut(s) 867
PciSI GCTCTTC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 111, 986
PkrI GCNGC 4 cut(s) 7, 10, 13, 856
PleI GAGTC 3 cut(s) 325, 394, 406
PpsI GAGTC 3 cut(s) 325, 394, 406
PscI ACATGT 1 cut(s) 867
PspFI CCCAGC 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 36, 673
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 4 cut(s) 302, 455, 830, 953
RsaNI GTAC 4 cut(s) 301, 454, 829, 952
RseI CAYNNNNRTG 1 cut(s) 734
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 947
SatI GCNGC 4 cut(s) 6, 9, 12, 855
Sau3AI GATC 2 cut(s) 34, 846
ScaI AGTACT 1 cut(s) 455
SchI GAGTC 3 cut(s) 326, 395, 407
ScrFI CCNGG 1 cut(s) 322
SfaNI GCATC 4 cut(s) 393, 468, 781, 841
SfcI CTRYAG 2 cut(s) 6, 177
Sfr274I CTCGAG 2 cut(s) 269, 287
SlaI CTCGAG 2 cut(s) 269, 287
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 3 cut(s) 269, 278, 287
SmoI CTYRAG 3 cut(s) 269, 278, 287
Sse9I AATT 3 cut(s) 292, 709, 794
SsiI CCGC 5 cut(s) 43, 489, 638, 701, 937
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 370, 646
TaiI ACGT 1 cut(s) 929
TaqI TCGA 6 cut(s) 225, 270, 288, 326, 401, 849
TasI AATT 3 cut(s) 292, 709, 794
TatI WGTACW 2 cut(s) 453, 951
TfiI GAWTC 2 cut(s) 111, 986
Tru1I TTAA 1 cut(s) 947
Tru9I TTAA 1 cut(s) 947
TscAI CASTG 1 cut(s) 373
TseI GCWGC 4 cut(s) 5, 8, 11, 854
TspDTI ATGAA 4 cut(s) 207, 276, 636, 1029
TspRI CASTG 1 cut(s) 373
XapI RAATTY 2 cut(s) 292, 709
XceI RCATGY 1 cut(s) 871
XhoI CTCGAG 2 cut(s) 269, 287
XmiI GTMKAC 1 cut(s) 872
ZrmI AGTACT 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.