Rh4DG419200
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007183
Physical Location & Seq
Reverse (-)
62767420 .. 62771335
3916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG419200.1

Sequence Viewer

Length: 1026 bp
ATGGCTGCAGCAGCTTCACTCTCTTTCTCTTTGGATCCACACCGCCATCTCTCTTCCAATCCCCACTTCACTCCCTCAACCTCACTTCTAATCCCCAAACACTCTTTTAGAATCTTCCATAACTCCAATCGTTACACTCTCAAATCTTCTTCTTCTTCTTCTTCTCATTCTTCTACAGCTACTTCTCCAAGCCCACCATCAGTACCCAGCTCTTCATTTCTCGAAGCCCCACTCAGAACCGGCCGGTTTCTCAGCAATGAAGACCTCGAGAAGCTCAAGTCGCTCGAGAATTTCAGGTACTATCAGGAACTGGAGTCCGGGTCGATGTGGGTTCGGGTCATGAGGTCGGAGGAGATGGACATCACTGTTGGGCTTTTGGCCGAGTCGTTTGCCGAGTCGATGCTTCTGCCTTCTGGTTATGTGGCTCTCTTGGGCTTCTTGGTCAAGCAGTACTTGATGGAACGAAGGGAGTTGATGCCCCACACCGCCACGCTTATTGGGTTTTACAGAAGCAACAAGGATGAGGCTAAAGATGAGAGCTTTGGGGGTAAAGGTGAGAGCTTTGAGGATAAAGGTGAGAGCTTTGAGGAGAAAGATGGAGGCTTTGGAGGAGAAGATGAAGATGGGGTTTTGGCGGGGACTGTGGAGGTTTGCTTTGACAAGAAGGGTGCCAATGCTTCTACTCCTACGCCAACTCCGCCCAAGAATTCGCCGTATATAAGCAACATGGCTGTGAAGAAGTCGCTTCGGAGGAGGGGCATTGGCTGGCATCTTTTGAAGGCAAGTGAGGAATTGATTTCTCAGATGAGTTCTTCAAGAGAGGCGTACTTGCATTGCAGAATGATCGATGCAGCTCCATTCAACATGTATACAAAAGCAGGTTACAACATTGTAAAGACAGATAGCATTTTGATACTACTGACATTGCAGAGGCGGAAACACTTAATGTACAAGAAACTTCCAGTCTTGACCAGCTTTTCAGAATCAGAAACTTTGTGTTCTGAAGAGGATGAAAATCACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

341

Amino Acids

38.1

Weight (kDa)

6.28

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 192 - 295 5.6e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 869
AccB1I GGYRCC 1 cut(s) 668
AccI GTMKAC 1 cut(s) 869
AciI CCGC 5 cut(s) 43, 486, 635, 698, 934
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 2 cut(s) 241, 378
AcsI RAATTY 2 cut(s) 289, 706
AcuI CTGAAG 1 cut(s) 1023
AfaI GTAC 5 cut(s) 204, 299, 452, 827, 950
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 3 cut(s) 778, 816, 862
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 9 cut(s) 14, 179, 210, 274, 540, 561, 582, 854, 975
AluI AGCT 9 cut(s) 14, 179, 210, 274, 540, 561, 582, 854, 975
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 1 cut(s) 310
Ama87I CYCGRG 2 cut(s) 266, 284
AoxI GGCC 2 cut(s) 241, 378
ApeKI GCWGC 4 cut(s) 5, 8, 11, 851
ApoI RAATTY 2 cut(s) 289, 706
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 566, 587
AvaI CYCGRG 2 cut(s) 266, 284
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 668
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 20, 23, 863
BccI CCATC 6 cut(s) 54, 205, 349, 451, 590, 617
BceAI ACGGC 1 cut(s) 697
BcgI CGANNNNNNTGC 6 cut(s) 371, 388, 405, 422, 826, 860
BcnI CCSGG 1 cut(s) 319
BfmI CTRYAG 2 cut(s) 6, 174
BfuAI ACCTGC 1 cut(s) 869
BisI GCNGC 4 cut(s) 6, 9, 12, 852
BlsI GCNGC 4 cut(s) 7, 10, 13, 853
BmcAI AGTACT 1 cut(s) 452
Bme1390I CCNGG 1 cut(s) 319
BmeT110I CYCGRG 2 cut(s) 266, 284
BmiI GGNNCC 2 cut(s) 36, 670
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 4 cut(s) 390, 465, 778, 838
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 846
BsaBI GATNNNNATC 2 cut(s) 359, 1014
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 679, 709
Bse118I RCCGGY 2 cut(s) 239, 243
Bse1I ACTGG 2 cut(s) 315, 962
Bse3DI GCAATG 3 cut(s) 262, 832, 923
Bse8I GATNNNNATC 2 cut(s) 359, 1014
BseCI ATCGAT 1 cut(s) 846
BseGI GGATG 2 cut(s) 526, 1015
BseJI GATNNNNATC 2 cut(s) 359, 1014
BseMI GCAATG 3 cut(s) 262, 832, 923
BseMII CTCAG 3 cut(s) 247, 265, 815
BseNI ACTGG 2 cut(s) 315, 962
BseRI GAGGAG 4 cut(s) 365, 602, 624, 766
BseX3I CGGCCG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 20, 23, 863
BseYI CCCAGC 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 244
BshFI GGCC 2 cut(s) 243, 380
BshNI GGYRCC 1 cut(s) 668
BshVI ATCGAT 1 cut(s) 846
BsiEI CGRYCG 1 cut(s) 244
BsiHKCI CYCGRG 2 cut(s) 266, 284
BsiSI CCGG 3 cut(s) 240, 244, 318
BslFI GGGAC 1 cut(s) 652
BsmFI GGGAC 1 cut(s) 652
BsnI GGCC 2 cut(s) 243, 380
BsoBI CYCGRG 2 cut(s) 266, 284
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 2 cut(s) 34, 843
BspACI CCGC 5 cut(s) 43, 486, 635, 698, 934
BspANI GGCC 2 cut(s) 243, 380
BspCNI CTCAG 3 cut(s) 246, 264, 814
BspDI ATCGAT 1 cut(s) 846
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 36, 670
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 869
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 668
BsrDI GCAATG 3 cut(s) 262, 832, 923
BsrFI RCCGGY 2 cut(s) 239, 243
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 2 cut(s) 315, 962
BssAI RCCGGY 2 cut(s) 239, 243
BssMI GATC 2 cut(s) 34, 843
BssNAI GTATAC 1 cut(s) 870
Bst1107I GTATAC 1 cut(s) 870
Bst4CI ACNGT 2 cut(s) 367, 643
Bst6I CTCTTC 3 cut(s) 58, 217, 999
BstAUI TGTACA 1 cut(s) 948
BstC8I GCNNGC 1 cut(s) 767
BstDEI CTNAG 3 cut(s) 233, 251, 801
BstF5I GGATG 2 cut(s) 526, 1015
BstKTI GATC 2 cut(s) 37, 846
BstMBI GATC 2 cut(s) 34, 843
BstMCI CGRYCG 1 cut(s) 244
BstMWI GCNNNNNNNGC 3 cut(s) 11, 280, 697
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 1 cut(s) 317
BstSFI CTRYAG 2 cut(s) 6, 174
BstV1I GCAGC 3 cut(s) 20, 23, 863
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 870
BstZI CGGCCG 1 cut(s) 241
Bsu15I ATCGAT 1 cut(s) 846
BsuRI GGCC 2 cut(s) 243, 380
BsuTUI ATCGAT 1 cut(s) 846
BtsCI GGATG 2 cut(s) 526, 1015
BtsIMutI CAGTG 1 cut(s) 363
BveI ACCTGC 1 cut(s) 869
Cac8I GCNNGC 1 cut(s) 767
CaiI CAGNNNCTG 1 cut(s) 310
CciI TCATGA 1 cut(s) 339
Cfr10I RCCGGY 2 cut(s) 239, 243
ClaI ATCGAT 1 cut(s) 846
Csp6I GTAC 5 cut(s) 203, 298, 451, 826, 949
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 3 cut(s) 340, 727, 865
CviQI GTAC 5 cut(s) 203, 298, 451, 826, 949
DdeI CTNAG 3 cut(s) 233, 251, 801
DpnI GATC 2 cut(s) 36, 845
DpnII GATC 2 cut(s) 34, 843
EaeI YGGCCR 2 cut(s) 241, 378
EagI CGGCCG 1 cut(s) 241
Eam1104I CTCTTC 3 cut(s) 58, 217, 999
EarI CTCTTC 3 cut(s) 58, 217, 999
EciI GGCGGA 2 cut(s) 687, 949
EclXI CGGCCG 1 cut(s) 241
Eco52I CGGCCG 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 1023
Eco88I CYCGRG 2 cut(s) 266, 284
EcoRI GAATTC 1 cut(s) 706
FaeI CATG 3 cut(s) 343, 730, 868
FaiI YATR 8 cut(s) 120, 341, 420, 717, 719, 728, 866, 870
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 652
FatI CATG 3 cut(s) 339, 726, 864
FauI CCCGC 1 cut(s) 628
FblI GTMKAC 1 cut(s) 869
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 852
FokI GGATG 2 cut(s) 533, 1022
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 852
GluI GCNGC 4 cut(s) 6, 9, 12, 852
GsaI CCCAGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 2 cut(s) 243, 380
HapII CCGG 3 cut(s) 240, 244, 318
Hin1II CATG 3 cut(s) 343, 730, 868
HinfI GANTC 5 cut(s) 111, 314, 383, 395, 983
HpaII CCGG 3 cut(s) 240, 244, 318
HphI GGTGA 2 cut(s) 566, 587
Hpy166II GTNNAC 1 cut(s) 870
Hpy188I TCNGA 7 cut(s) 236, 349, 750, 804, 982, 988, 1003
Hpy188III TCNNGA 7 cut(s) 221, 268, 286, 305, 340, 816, 967
Hpy8I GTNNAC 1 cut(s) 870
HpyAV CCTTC 4 cut(s) 420, 459, 658, 772
HpyCH4III ACNGT 2 cut(s) 367, 643
HpyCH4V TGCA 5 cut(s) 8, 832, 837, 851, 928
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 280, 697
HpyF3I CTNAG 3 cut(s) 233, 251, 801
Hsp92II CATG 3 cut(s) 343, 730, 868
Kzo9I GATC 2 cut(s) 34, 843
LguI GCTCTTC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 3 cut(s) 20, 23, 863
LweI GCATC 4 cut(s) 390, 465, 778, 838
MaeIII GTNAC 2 cut(s) 131, 881
MalI GATC 2 cut(s) 36, 845
MboI GATC 2 cut(s) 34, 843
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 289, 706, 791
MlyI GAGTC 3 cut(s) 323, 392, 404
MmeI TCCRAC 1 cut(s) 327
MseI TTAA 1 cut(s) 944
MslI CAYNNNNRTG 1 cut(s) 731
MspI CCGG 3 cut(s) 240, 244, 318
MspR9I CCNGG 1 cut(s) 319
MwoI GCNNNNNNNGC 3 cut(s) 11, 280, 697
NciI CCSGG 1 cut(s) 319
NdeII GATC 2 cut(s) 34, 843
NlaIII CATG 3 cut(s) 343, 730, 868
NlaIV GGNNCC 2 cut(s) 36, 670
NmeAIII GCCGAG 2 cut(s) 406, 418
NspI RCATGY 1 cut(s) 868
PaeR7I CTCGAG 2 cut(s) 266, 284
PagI TCATGA 1 cut(s) 339
PciI ACATGT 1 cut(s) 864
PciSI GCTCTTC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 111, 983
PkrI GCNGC 4 cut(s) 7, 10, 13, 853
PleI GAGTC 3 cut(s) 322, 391, 403
PpsI GAGTC 3 cut(s) 322, 391, 403
PscI ACATGT 1 cut(s) 864
PspFI CCCAGC 1 cut(s) 206
PspN4I GGNNCC 2 cut(s) 36, 670
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 5 cut(s) 204, 299, 452, 827, 950
RsaNI GTAC 5 cut(s) 203, 298, 451, 826, 949
RseI CAYNNNNRTG 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 944
SatI GCNGC 4 cut(s) 6, 9, 12, 852
Sau3AI GATC 2 cut(s) 34, 843
ScaI AGTACT 1 cut(s) 452
SchI GAGTC 3 cut(s) 323, 392, 404
ScrFI CCNGG 1 cut(s) 319
SfaNI GCATC 4 cut(s) 390, 465, 778, 838
SfcI CTRYAG 2 cut(s) 6, 174
Sfr274I CTCGAG 2 cut(s) 266, 284
SlaI CTCGAG 2 cut(s) 266, 284
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 3 cut(s) 266, 275, 284
SmoI CTYRAG 3 cut(s) 266, 275, 284
Sse9I AATT 3 cut(s) 289, 706, 791
SsiI CCGC 5 cut(s) 43, 486, 635, 698, 934
StyD4I CCNGG 1 cut(s) 317
TaaI ACNGT 2 cut(s) 367, 643
TaqI TCGA 6 cut(s) 222, 267, 285, 323, 398, 846
TasI AATT 3 cut(s) 289, 706, 791
TatI WGTACW 2 cut(s) 450, 948
TfiI GAWTC 2 cut(s) 111, 983
Tru1I TTAA 1 cut(s) 944
Tru9I TTAA 1 cut(s) 944
TscAI CASTG 1 cut(s) 370
TseI GCWGC 4 cut(s) 5, 8, 11, 851
TspDTI ATGAA 4 cut(s) 204, 273, 633, 1026
TspRI CASTG 1 cut(s) 370
XapI RAATTY 2 cut(s) 289, 706
XceI RCATGY 1 cut(s) 868
XhoI CTCGAG 2 cut(s) 266, 284
XmiI GTMKAC 1 cut(s) 869
ZrmI AGTACT 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.