FvH4_4g34910
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007183
Physical Location & Seq
Reverse (-)
32430765 .. 32434244
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34910.t4

Sequence Viewer

Length: 996 bp
ATGGCTGCAACAGCTTCACTCTCTCTCTCTTTGGATCCACACCGCCATCTCTTCTCCACTCCCCACTTCACTCCCTCCTCAACCTCACTTCTCATCCCCAAACACCCTTCTAGACTCTTCCACAACTCCAAATCTTACACTCTCAAATCCTCCTCCTCTTCTTCTTCTACTACTCCAAGCTCTTCATTTCTCGAAGCCCCACTAAGAACAGGCAGGTTCCTCAGCAATGAAGACCTCGAGAAGCTCAAGTCTCTTGAGAATTTCAGCTACTATCAGGAGCTTGAATCCGGGTCGATGTGGGTTCGGGTCATGAGGTCAGAGGAGTTGGACATCACAGTTGGGCTTTTAGCTGAGTCTTTTGCTGAGTCAATGCTTATGCCTTCTGGGTATGTGGCTCTGTTGGGTTTCTTGGTCAAACAGTACTTGATGGAGAGAAGAGAGCTCATGCCCCACACTGCTACGCTTATTGGGTTTTACAGAAGCAACAAAGATGAAGGTAAAGATGAGAGCTTTGAGGTTAAAGGTGAGAGCTTTGAGGGTAAAGGTGAGCGCTTTGAGGAGAAAGATGGAGGGTTTGGAGGAGAAGATGAAGGTGGAGTTTTGGCGGGAACTGTGGAGGTTTGCTTTGACAAAATGGGTGCCAATGCTTCTACTCCGACGCCAACTCCGCCCAAGAATTCGCCTTATATAAGCAACATGGCAGTGAGGAAGCCGCTTCGGAGGAGGGGAATTGGCTGGCATCTTTTGAAGGCAAGTGAGGAACTGATTTCTCAGATGAGTTCTTCAAGAGAGGCGTACTTGCATTGCAGAATGATCGATACAGCTCCATTCAACATGTATACAAAAGCAGGTTACAACATTGTAAAGACAGATAGCATTCTGATTCTACTGACATTGCAGAGGCGTAAACACTTAATGTACAAGAAACTTCCAGTCTTGACCAGCTTTTCAGAATCAGAAACTTTGTGTTCTGAAGACAATGAAAATCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

332

Amino Acids

37.13

Weight (kDa)

6.39

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 185 - 285 5.4e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 204, 839
AccB1I GGYRCC 1 cut(s) 638
AccI GTMKAC 1 cut(s) 839
AciI CCGC 4 cut(s) 43, 605, 668, 713
AclWI GGATC 2 cut(s) 29, 42
AcsI RAATTY 2 cut(s) 259, 676
AcuI CTGAAG 1 cut(s) 993
AcyI GRCGYC 1 cut(s) 659
AfaI GTAC 3 cut(s) 422, 797, 920
AfeI AGCGCT 1 cut(s) 551
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 4 cut(s) 284, 748, 786, 832
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 2 cut(s) 29, 42
Ama87I CYCGRG 1 cut(s) 236
Aor51HI AGCGCT 1 cut(s) 551
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 259, 676
AspLEI GCGC 1 cut(s) 552
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 536, 557
AvaI CYCGRG 1 cut(s) 236
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 638
BanII GRGCYC 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 237, 981
Bbv12I GWGCWC 1 cut(s) 444
BbvCI CCTCAGC 1 cut(s) 221
BccI CCATC 3 cut(s) 54, 421, 560
BcgI CGANNNNNNTGC 2 cut(s) 796, 830
BcnI CCSGG 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 553
BfuAI ACCTGC 2 cut(s) 204, 839
BisI GCNGC 2 cut(s) 6, 713
BlsI GCNGC 2 cut(s) 7, 714
BmcAI AGTACT 1 cut(s) 422
Bme1390I CCNGG 1 cut(s) 289
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 3 cut(s) 36, 218, 640
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 748
BpiI GAAGAC 2 cut(s) 237, 981
Bpu10I CCTNAGC 1 cut(s) 221
BpuEI CTTGAG 2 cut(s) 230, 275
BpuMI CCSGG 1 cut(s) 289
Bsa29I ATCGAT 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bse1I ACTGG 1 cut(s) 932
Bse3DI GCAATG 3 cut(s) 232, 802, 893
BseCI ATCGAT 1 cut(s) 816
BseGI GGATG 1 cut(s) 93
BseMI GCAATG 3 cut(s) 232, 802, 893
BseMII CTCAG 4 cut(s) 235, 342, 354, 785
BseNI ACTGG 1 cut(s) 932
BseRI GAGGAG 7 cut(s) 67, 142, 145, 335, 572, 594, 736
BshNI GGYRCC 1 cut(s) 638
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 288
BsmAI GTCTC 1 cut(s) 255
BsmI GAATGC 1 cut(s) 876
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 918
Bsp143I GATC 2 cut(s) 34, 813
BspACI CCGC 4 cut(s) 43, 605, 668, 713
BspCNI CTCAG 4 cut(s) 234, 343, 355, 784
BspDI ATCGAT 1 cut(s) 816
BspHI TCATGA 1 cut(s) 309
BspLI GGNNCC 3 cut(s) 36, 218, 640
BspMI ACCTGC 2 cut(s) 204, 839
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 638
BsrDI GCAATG 3 cut(s) 232, 802, 893
BsrGI TGTACA 1 cut(s) 918
BsrI ACTGG 1 cut(s) 932
BssMI GATC 2 cut(s) 34, 813
BssNAI GTATAC 1 cut(s) 840
BssNI GRCGYC 1 cut(s) 659
Bst1107I GTATAC 1 cut(s) 840
Bst4CI ACNGT 3 cut(s) 337, 420, 613
Bst6I CTCTTC 5 cut(s) 56, 122, 163, 187, 430
BstACI GRCGYC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 918
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 5 cut(s) 203, 221, 351, 363, 771
BstF5I GGATG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 2 cut(s) 37, 816
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 34, 813
BstMWI GCNNNNNNNGC 2 cut(s) 11, 667
BstNSI RCATGY 1 cut(s) 838
BstSCI CCNGG 1 cut(s) 287
BstV2I GAAGAC 2 cut(s) 237, 981
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 840
Bsu15I ATCGAT 1 cut(s) 816
BsuTUI ATCGAT 1 cut(s) 816
BtsCI GGATG 1 cut(s) 93
BtsI GCAGTG 2 cut(s) 453, 708
BtsIMutI CAGTG 2 cut(s) 453, 708
BveI ACCTGC 2 cut(s) 204, 839
Cac8I GCNNGC 1 cut(s) 737
CciI TCATGA 1 cut(s) 309
CfoI GCGC 1 cut(s) 552
ClaI ATCGAT 1 cut(s) 816
CseI GACGC 1 cut(s) 667
Csp6I GTAC 3 cut(s) 421, 796, 919
CviAII CATG 4 cut(s) 310, 445, 697, 835
CviQI GTAC 3 cut(s) 421, 796, 919
DdeI CTNAG 5 cut(s) 203, 221, 351, 363, 771
DpnI GATC 2 cut(s) 36, 815
DpnII GATC 2 cut(s) 34, 813
Eam1104I CTCTTC 5 cut(s) 56, 122, 163, 187, 430
EarI CTCTTC 5 cut(s) 56, 122, 163, 187, 430
EciI GGCGGA 1 cut(s) 657
Ecl136II GAGCTC 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 444
Eco47III AGCGCT 1 cut(s) 551
Eco53kI GAGCTC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 993
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 442
EcoRI GAATTC 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 4 cut(s) 313, 448, 700, 838
FaiI YATR 9 cut(s) 311, 377, 390, 446, 687, 689, 698, 836, 840
FatI CATG 4 cut(s) 309, 444, 696, 834
FauI CCCGC 1 cut(s) 598
FblI GTMKAC 1 cut(s) 839
Fnu4HI GCNGC 2 cut(s) 6, 713
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 6, 713
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 551
GluI GCNGC 2 cut(s) 6, 713
HaeII RGCGCY 1 cut(s) 553
HapII CCGG 1 cut(s) 288
HgaI GACGC 1 cut(s) 667
HhaI GCGC 1 cut(s) 552
Hin1I GRCGYC 1 cut(s) 659
Hin1II CATG 4 cut(s) 313, 448, 700, 838
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HinfI GANTC 6 cut(s) 114, 284, 353, 365, 883, 953
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 536, 557
Hpy166II GTNNAC 2 cut(s) 840, 908
Hpy188I TCNGA 8 cut(s) 319, 657, 720, 774, 882, 952, 958, 973
Hpy188III TCNNGA 8 cut(s) 111, 191, 238, 254, 275, 310, 786, 937
Hpy8I GTNNAC 2 cut(s) 840, 908
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 5 cut(s) 117, 390, 488, 584, 742
HpyCH4III ACNGT 3 cut(s) 337, 420, 613
HpyCH4V TGCA 4 cut(s) 8, 802, 807, 898
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 667
HpyF3I CTNAG 5 cut(s) 203, 221, 351, 363, 771
Hsp92I GRCGYC 1 cut(s) 659
Hsp92II CATG 4 cut(s) 313, 448, 700, 838
HspAI GCGC 1 cut(s) 550
Kzo9I GATC 2 cut(s) 34, 813
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 2 cut(s) 277, 829
LpnPI CCDG 9 cut(s) 195, 199, 260, 301, 369, 721, 834, 945, 955
LweI GCATC 1 cut(s) 748
MaeI CTAG 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 851
MalI GATC 2 cut(s) 36, 815
MboI GATC 2 cut(s) 34, 813
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 3 cut(s) 259, 676, 729
MlyI GAGTC 3 cut(s) 108, 362, 374
MmeI TCCRAC 2 cut(s) 306, 680
MseI TTAA 2 cut(s) 519, 914
MslI CAYNNNNRTG 1 cut(s) 701
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 289
Mva1269I GAATGC 1 cut(s) 876
MwoI GCNNNNNNNGC 2 cut(s) 11, 667
NciI CCSGG 1 cut(s) 289
NdeII GATC 2 cut(s) 34, 813
NlaIII CATG 4 cut(s) 313, 448, 700, 838
NlaIV GGNNCC 3 cut(s) 36, 218, 640
NspI RCATGY 1 cut(s) 838
PaeR7I CTCGAG 1 cut(s) 236
PagI TCATGA 1 cut(s) 309
PciI ACATGT 1 cut(s) 834
PciSI GCTCTTC 1 cut(s) 187
PctI GAATGC 1 cut(s) 876
PfeI GAWTC 3 cut(s) 284, 883, 953
PkrI GCNGC 2 cut(s) 7, 714
PleI GAGTC 3 cut(s) 108, 361, 373
PpsI GAGTC 3 cut(s) 108, 361, 373
PscI ACATGT 1 cut(s) 834
Psp124BI GAGCTC 1 cut(s) 444
PspN4I GGNNCC 3 cut(s) 36, 218, 640
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 3 cut(s) 422, 797, 920
RsaNI GTAC 3 cut(s) 421, 796, 919
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 444
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 519, 914
SatI GCNGC 2 cut(s) 6, 713
Sau3AI GATC 2 cut(s) 34, 813
ScaI AGTACT 1 cut(s) 422
SchI GAGTC 3 cut(s) 108, 362, 374
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 1 cut(s) 748
Sfr274I CTCGAG 1 cut(s) 236
SlaI CTCGAG 1 cut(s) 236
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 3 cut(s) 236, 245, 254
SmoI CTYRAG 3 cut(s) 236, 245, 254
Sse9I AATT 3 cut(s) 259, 676, 729
SsiI CCGC 4 cut(s) 43, 605, 668, 713
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 444
StyD4I CCNGG 1 cut(s) 287
TaaI ACNGT 3 cut(s) 337, 420, 613
TaqI TCGA 4 cut(s) 192, 237, 293, 816
TasI AATT 3 cut(s) 259, 676, 729
TatI WGTACW 2 cut(s) 420, 918
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 3 cut(s) 284, 883, 953
Tru1I TTAA 2 cut(s) 519, 914
Tru9I TTAA 2 cut(s) 519, 914
TscAI CASTG 2 cut(s) 460, 708
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 5 cut(s) 174, 243, 507, 603, 996
TspRI CASTG 2 cut(s) 460, 708
XapI RAATTY 2 cut(s) 259, 676
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 1 cut(s) 838
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 839
XspI CTAG 1 cut(s) 111
ZrmI AGTACT 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.