RLG00000005838
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007183
Physical Location & Seq
Forward (+)
2274132 .. 2275961
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005838

Sequence Viewer

Length: 915 bp
ATGGCTGCAACAGCTTCACTCTCTTTCTCTTTGGATCCACACCGCCATCTCTCTTCCAATCCCCACTTCACTCCCTCAACCTCACTTCTAATCCCCAAACACTCTTTTAGAATCTTCCATAACTCCAATCGTTACACTCTCAAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTACAGCTACTTCTCCAAGCCCGCCATCACTACCCAGCTCTTCATTTCTCGAAGCCCCACTCAGAACCGGCCGGTTTCTCAGCAATGAAGACCTCGAGAAGCTCAAGTCGCTCGAGAATTTCAGGTACTATGAGGAACTGGAGTCCGGGTCGATGTGGGTTCGGGTCATGAGGTCGGAGGAGATGGACATCACCGTTGGGCTTTTGGCCGAGTCGTTTGCCGAGTCGATGCTTCTGCCTTCTGGGTATGTGGCTCTCTTGGGCTTCTTGGTCAAGCAGTACTTGATGGAGCGAAGGGAGTTGATGCCTCACACCGCCACGCTTATTGGGTTTTACAGAAGCAACAAGGATGAGGCTAAAGGTGAGAGCTTTGAGGTTAAAGATGAGAGCTTTGAGGGTAAAGGTGAGAGCTTTGAGGAGAAAGATGGAGGCTTTGGAGGAGAAGTTGAAGATGGGGTTTTGGCGGGGACTGTGGAGGTTTGCTTTGACAAGAAGGGTGCCAATGCTTCTACTCCTACGCCAACTCCGCCCAAGAATTCGCCTTATATAAGCAACATGGCTGTGAAGAAGTCGCTTCGGAGGAGAGGCATTGGCTGGCATCTTTTGCAGGCAAGTGAGGAATTGATTTCTCAGATGAGCTCTTCAAGAGAGGCGTACTTGCATTGCAGAATGATCGATGCAGCTCCATTCAACATGTATACAAAAGCAGTACGTAATGTGTGGTTTTTAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

305

Amino Acids

33.73

Weight (kDa)

6.27

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 197 - 293 3.9e-07 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 677
AccI GTMKAC 1 cut(s) 878
AciI CCGC 5 cut(s) 43, 203, 495, 644, 707
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 2 cut(s) 250, 387
AcsI RAATTY 2 cut(s) 298, 715
AfaI GTAC 4 cut(s) 308, 461, 836, 891
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 3 cut(s) 629, 825, 871
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 9 cut(s) 14, 188, 219, 283, 549, 570, 591, 819, 863
AluI AGCT 9 cut(s) 14, 188, 219, 283, 549, 570, 591, 819, 863
Alw21I GWGCWC 1 cut(s) 821
AlwI GGATC 2 cut(s) 29, 42
Ama87I CYCGRG 2 cut(s) 275, 293
AoxI GGCC 2 cut(s) 250, 387
ApeKI GCWGC 2 cut(s) 5, 860
ApoI RAATTY 2 cut(s) 298, 715
AsuC2I CCSGG 1 cut(s) 328
AsuHPI GGTGA 3 cut(s) 364, 554, 596
AvaI CYCGRG 2 cut(s) 275, 293
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 677
BanII GRGCYC 1 cut(s) 821
BbsI GAAGAC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 821
BbvI GCAGC 1 cut(s) 872
BccI CCATC 6 cut(s) 54, 214, 358, 460, 599, 626
BcgI CGANNNNNNTGC 6 cut(s) 380, 397, 414, 431, 835, 869
BcnI CCSGG 1 cut(s) 328
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 2 cut(s) 6, 861
BlsI GCNGC 2 cut(s) 7, 862
BmcAI AGTACT 1 cut(s) 461
Bme1390I CCNGG 1 cut(s) 328
BmeT110I CYCGRG 2 cut(s) 275, 293
BmiI GGNNCC 2 cut(s) 36, 679
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 4 cut(s) 399, 474, 787, 847
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 855
BsaAI YACGTR 1 cut(s) 893
BsaBI GATNNNNATC 1 cut(s) 368
BsaXI ACNNNNNCTCC 6 cut(s) 314, 344, 609, 639, 688, 718
Bse118I RCCGGY 2 cut(s) 248, 252
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 271, 841
Bse8I GATNNNNATC 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 855
BseGI GGATG 1 cut(s) 535
BseJI GATNNNNATC 1 cut(s) 368
BseMI GCAATG 2 cut(s) 271, 841
BseMII CTCAG 3 cut(s) 256, 274, 824
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 4 cut(s) 374, 611, 633, 775
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 872
BseYI CCCAGC 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 2 cut(s) 252, 389
BshNI GGYRCC 1 cut(s) 677
BshVI ATCGAT 1 cut(s) 855
BsiEI CGRYCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 821
BsiHKCI CYCGRG 2 cut(s) 275, 293
BsiSI CCGG 3 cut(s) 249, 253, 327
BslFI GGGAC 1 cut(s) 661
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 2 cut(s) 252, 389
BsoBI CYCGRG 2 cut(s) 275, 293
Bsp1286I GDGCHC 1 cut(s) 821
Bsp143I GATC 2 cut(s) 34, 852
BspACI CCGC 5 cut(s) 43, 203, 495, 644, 707
BspANI GGCC 2 cut(s) 252, 389
BspCNI CTCAG 3 cut(s) 255, 273, 823
BspDI ATCGAT 1 cut(s) 855
BspHI TCATGA 1 cut(s) 348
BspLI GGNNCC 2 cut(s) 36, 679
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 2 cut(s) 226, 826
BspT107I GGYRCC 1 cut(s) 677
BsrDI GCAATG 2 cut(s) 271, 841
BsrFI RCCGGY 2 cut(s) 248, 252
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 2 cut(s) 248, 252
BssMI GATC 2 cut(s) 34, 852
BssNAI GTATAC 1 cut(s) 879
Bst1107I GTATAC 1 cut(s) 879
Bst4CI ACNGT 2 cut(s) 376, 652
Bst6I CTCTTC 4 cut(s) 58, 181, 226, 826
BstAPI GCANNNNNTGC 1 cut(s) 784
BstBAI YACGTR 1 cut(s) 893
BstC8I GCNNGC 3 cut(s) 203, 776, 789
BstDEI CTNAG 3 cut(s) 242, 260, 810
BstF5I GGATG 1 cut(s) 535
BstKTI GATC 2 cut(s) 37, 855
BstMBI GATC 2 cut(s) 34, 852
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 4 cut(s) 11, 289, 706, 784
BstNSI RCATGY 1 cut(s) 877
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 183
BstSNI TACGTA 1 cut(s) 893
BstV1I GCAGC 1 cut(s) 872
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 879
BstZI CGGCCG 1 cut(s) 250
Bsu15I ATCGAT 1 cut(s) 855
BsuRI GGCC 2 cut(s) 252, 389
BsuTUI ATCGAT 1 cut(s) 855
BtsCI GGATG 1 cut(s) 535
Cac8I GCNNGC 3 cut(s) 203, 776, 789
CciI TCATGA 1 cut(s) 348
Cfr10I RCCGGY 2 cut(s) 248, 252
ClaI ATCGAT 1 cut(s) 855
Csp6I GTAC 4 cut(s) 307, 460, 835, 890
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 3 cut(s) 349, 736, 874
CviQI GTAC 4 cut(s) 307, 460, 835, 890
DdeI CTNAG 3 cut(s) 242, 260, 810
DpnI GATC 2 cut(s) 36, 854
DpnII GATC 2 cut(s) 34, 852
EaeI YGGCCR 2 cut(s) 250, 387
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 4 cut(s) 58, 181, 226, 826
EarI CTCTTC 4 cut(s) 58, 181, 226, 826
EciI GGCGGA 1 cut(s) 696
Ecl136II GAGCTC 1 cut(s) 819
EclXI CGGCCG 1 cut(s) 250
Eco105I TACGTA 1 cut(s) 893
Eco24I GRGCYC 1 cut(s) 821
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 819
Eco88I CYCGRG 2 cut(s) 275, 293
EcoICRI GAGCTC 1 cut(s) 819
EcoRI GAATTC 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 821
FaeI CATG 3 cut(s) 352, 739, 877
FaiI YATR 9 cut(s) 120, 312, 350, 429, 726, 728, 737, 875, 879
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 661
FatI CATG 3 cut(s) 348, 735, 873
FauI CCCGC 2 cut(s) 210, 637
FblI GTMKAC 1 cut(s) 878
Fnu4HI GCNGC 2 cut(s) 6, 861
FokI GGATG 1 cut(s) 542
FriOI GRGCYC 1 cut(s) 821
Fsp4HI GCNGC 2 cut(s) 6, 861
GluI GCNGC 2 cut(s) 6, 861
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 2 cut(s) 252, 389
HapII CCGG 3 cut(s) 249, 253, 327
Hin1II CATG 3 cut(s) 352, 739, 877
HinfI GANTC 4 cut(s) 111, 323, 392, 404
HpaII CCGG 3 cut(s) 249, 253, 327
HphI GGTGA 3 cut(s) 364, 554, 596
Hpy166II GTNNAC 1 cut(s) 879
Hpy188I TCNGA 4 cut(s) 245, 358, 759, 813
Hpy188III TCNNGA 5 cut(s) 230, 277, 295, 349, 825
Hpy8I GTNNAC 1 cut(s) 879
HpyAV CCTTC 3 cut(s) 429, 468, 667
HpyCH4III ACNGT 2 cut(s) 376, 652
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 5 cut(s) 8, 787, 841, 846, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 289, 706, 784
HpyF3I CTNAG 3 cut(s) 242, 260, 810
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 3 cut(s) 352, 739, 877
Kzo9I GATC 2 cut(s) 34, 852
LguI GCTCTTC 2 cut(s) 226, 826
LmnI GCTCC 2 cut(s) 469, 868
LpnPI CCDG 9 cut(s) 229, 262, 266, 289, 305, 340, 408, 760, 773
Lsp1109I GCAGC 1 cut(s) 872
LweI GCATC 4 cut(s) 399, 474, 787, 847
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 36, 854
MboI GATC 2 cut(s) 34, 852
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 821
MluCI AATT 3 cut(s) 298, 715, 800
MlyI GAGTC 3 cut(s) 332, 401, 413
MmeI TCCRAC 1 cut(s) 336
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 740
MspI CCGG 3 cut(s) 249, 253, 327
MspR9I CCNGG 1 cut(s) 328
MwoI GCNNNNNNNGC 4 cut(s) 11, 289, 706, 784
NciI CCSGG 1 cut(s) 328
NdeII GATC 2 cut(s) 34, 852
NlaIII CATG 3 cut(s) 352, 739, 877
NlaIV GGNNCC 2 cut(s) 36, 679
NmeAIII GCCGAG 2 cut(s) 415, 427
NspI RCATGY 1 cut(s) 877
PaeR7I CTCGAG 2 cut(s) 275, 293
PagI TCATGA 1 cut(s) 348
PciI ACATGT 1 cut(s) 873
PciSI GCTCTTC 2 cut(s) 226, 826
PfeI GAWTC 1 cut(s) 111
PkrI GCNGC 2 cut(s) 7, 862
PleI GAGTC 3 cut(s) 331, 400, 412
PpsI GAGTC 3 cut(s) 331, 400, 412
Ppu21I YACGTR 1 cut(s) 893
PscI ACATGT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 821
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 36, 679
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 4 cut(s) 308, 461, 836, 891
RsaNI GTAC 4 cut(s) 307, 460, 835, 890
RseI CAYNNNNRTG 1 cut(s) 740
SacI GAGCTC 1 cut(s) 821
SapI GCTCTTC 2 cut(s) 226, 826
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 2 cut(s) 6, 861
Sau3AI GATC 2 cut(s) 34, 852
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 3 cut(s) 332, 401, 413
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 821
SfaNI GCATC 4 cut(s) 399, 474, 787, 847
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 2 cut(s) 275, 293
SlaI CTCGAG 2 cut(s) 275, 293
SmiMI CAYNNNNRTG 1 cut(s) 740
SmlI CTYRAG 3 cut(s) 275, 284, 293
SmoI CTYRAG 3 cut(s) 275, 284, 293
SnaBI TACGTA 1 cut(s) 893
Sse9I AATT 3 cut(s) 298, 715, 800
SsiI CCGC 5 cut(s) 43, 203, 495, 644, 707
SstI GAGCTC 1 cut(s) 821
StyD4I CCNGG 1 cut(s) 326
TaaI ACNGT 2 cut(s) 376, 652
TaiI ACGT 1 cut(s) 895
TaqI TCGA 6 cut(s) 231, 276, 294, 332, 407, 855
TasI AATT 3 cut(s) 298, 715, 800
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TseI GCWGC 2 cut(s) 5, 860
TspDTI ATGAA 2 cut(s) 213, 282
XapI RAATTY 2 cut(s) 298, 715
XceI RCATGY 1 cut(s) 877
XhoI CTCGAG 2 cut(s) 275, 293
XmiI GTMKAC 1 cut(s) 878
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.