Rw4G035430
ERF Family

superfamily. Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0007183
Physical Location & Seq
Reverse (-)
62223972 .. 62227741
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035430.1

Sequence Viewer

Length: 1023 bp
ATGGCTGCAGCAGCTTCACTCTCTTTCTCTTTGGATCCACACCGCCATCTCTCTTCCAATCCCCACTTCACTTCCTCAACCTCACTTCTAATCCCCAAACACTCTTTTAGAATCTTCCATAACTCCAATCGTTGCACTCTCAAATCTTCTTCTTCTTCTTCTCATTCTTCTACAGCTACTTCTCCAAGCCCACCATCACTACCCAGCTCTTCGTTTCTCGAAGCCCCACTCAGAACCGGCCGGTTTCTCAGCAATGAAGACCTCGAGAAGCTCAAGTCGCTCGAGAATTTCAGGTACTATCAGGAACTGGAGTCCGGGTCGATGTGGGTTCGGGTCATGAGGTCGGAGGAGATGGACATCACTGTTGGGCTTTTGTCCGAGTCGTTTGCCGAGTCGATGCTTCTGCCTTCTGGTTATGTGGCTCTCTTGGGGTTCTTGGTCAAGCAGTACTTGATGGAACGAAGGGAGTTGATGCCCCACACCGCCACGCTTATTGGGTTTTACAGAAGCAACAAGGATGAGGCTAAAGATGAGAGCTTTGGGGGTAAAGGTGAGAGCTTTGAGGATAAAGGTGAGAGCTTTGAGGAGAAAGATGGAGGCTTTGGAGGAGAAGATGAAGATGGGGTTTTGGCGGGGACTGTGGAGGTTTGCTTTGACAAGAAGGGTGCCAATGCTTCTACTCCTACGCCAACTCCGCCCAAGAATTCGCCTTATATAAGCAACATGGCTGTGAAGAAGTCGCTTCGGAGGAGGGGCATTGGCTGGCATCTTTTGAAGGCAAGTGAGGAATTGATTTCTCAGATGAGTTCTTCAAGAGAGGCGTACTTGCATTGCAGAATGATCGATGCAGCTCCATTCAACATGTATACAAAAGCAGGTTACAACATTGTAAAGACAGATAGCATTTTGATACTACTGACGTTGCAGAGGCGGAAACACTTAATGTACAAGAAACTTCCAGTCTTGACCAGCTTTTCAGAATCAGAAACTTTGTGTTCTGAAGAGGATGAAAATCACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acetyltransf_1 Acetyltransf_10 FR47

Protein Analysis

340

Amino Acids

37.98

Weight (kDa)

6.28

Isoelectric Point (pI)

62.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 191 - 294 5.5e-08 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 866
AccB1I GGYRCC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 866
AciI CCGC 5 cut(s) 43, 483, 632, 695, 931
AclWI GGATC 2 cut(s) 29, 42
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 2 cut(s) 286, 703
AcuI CTGAAG 1 cut(s) 1020
AfaI GTAC 4 cut(s) 296, 449, 824, 947
AflIII ACRYGT 1 cut(s) 861
AgsI TTSAA 3 cut(s) 775, 813, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 9 cut(s) 14, 176, 207, 271, 537, 558, 579, 851, 972
AluI AGCT 9 cut(s) 14, 176, 207, 271, 537, 558, 579, 851, 972
AlwI GGATC 2 cut(s) 29, 42
AlwNI CAGNNNCTG 1 cut(s) 307
Ama87I CYCGRG 2 cut(s) 263, 281
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 4 cut(s) 5, 8, 11, 848
ApoI RAATTY 2 cut(s) 286, 703
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 563, 584
AvaI CYCGRG 2 cut(s) 263, 281
BamHI GGATCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 665
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 20, 23, 860
BccI CCATC 6 cut(s) 54, 202, 346, 448, 587, 614
BcgI CGANNNNNNTGC 6 cut(s) 368, 385, 402, 419, 823, 857
BcnI CCSGG 1 cut(s) 316
BfmI CTRYAG 2 cut(s) 6, 171
BfuAI ACCTGC 1 cut(s) 866
BisI GCNGC 4 cut(s) 6, 9, 12, 849
BlsI GCNGC 4 cut(s) 7, 10, 13, 850
BmcAI AGTACT 1 cut(s) 449
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 2 cut(s) 263, 281
BmiI GGNNCC 2 cut(s) 36, 667
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 4 cut(s) 387, 462, 775, 835
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 257
BpuMI CCSGG 1 cut(s) 316
Bsa29I ATCGAT 1 cut(s) 843
BsaBI GATNNNNATC 2 cut(s) 356, 1011
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 676, 706
Bse118I RCCGGY 2 cut(s) 236, 240
Bse1I ACTGG 2 cut(s) 312, 959
Bse3DI GCAATG 2 cut(s) 259, 829
Bse8I GATNNNNATC 2 cut(s) 356, 1011
BseCI ATCGAT 1 cut(s) 843
BseGI GGATG 2 cut(s) 523, 1012
BseJI GATNNNNATC 2 cut(s) 356, 1011
BseMI GCAATG 2 cut(s) 259, 829
BseMII CTCAG 3 cut(s) 244, 262, 812
BseNI ACTGG 2 cut(s) 312, 959
BseRI GAGGAG 4 cut(s) 362, 599, 621, 763
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 20, 23, 860
BseYI CCCAGC 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 665
BshVI ATCGAT 1 cut(s) 843
BsiEI CGRYCG 1 cut(s) 241
BsiHKCI CYCGRG 2 cut(s) 263, 281
BsiSI CCGG 3 cut(s) 237, 241, 315
BslFI GGGAC 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 2 cut(s) 263, 281
Bsp1407I TGTACA 1 cut(s) 945
Bsp143I GATC 2 cut(s) 34, 840
BspACI CCGC 5 cut(s) 43, 483, 632, 695, 931
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 243, 261, 811
BspDI ATCGAT 1 cut(s) 843
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 36, 667
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 866
BspPI GGATC 2 cut(s) 29, 42
BspQI GCTCTTC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 665
BsrDI GCAATG 2 cut(s) 259, 829
BsrFI RCCGGY 2 cut(s) 236, 240
BsrGI TGTACA 1 cut(s) 945
BsrI ACTGG 2 cut(s) 312, 959
BssAI RCCGGY 2 cut(s) 236, 240
BssMI GATC 2 cut(s) 34, 840
BssNAI GTATAC 1 cut(s) 867
Bst1107I GTATAC 1 cut(s) 867
Bst4CI ACNGT 2 cut(s) 364, 640
Bst6I CTCTTC 3 cut(s) 58, 214, 996
BstAUI TGTACA 1 cut(s) 945
BstC8I GCNNGC 1 cut(s) 764
BstDEI CTNAG 3 cut(s) 230, 248, 798
BstF5I GGATG 2 cut(s) 523, 1012
BstKTI GATC 2 cut(s) 37, 843
BstMBI GATC 2 cut(s) 34, 840
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 11, 277, 694
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 314
BstSFI CTRYAG 2 cut(s) 6, 171
BstV1I GCAGC 3 cut(s) 20, 23, 860
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BstZ17I GTATAC 1 cut(s) 867
BstZI CGGCCG 1 cut(s) 238
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 843
BtsCI GGATG 2 cut(s) 523, 1012
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 866
Cac8I GCNNGC 1 cut(s) 764
CaiI CAGNNNCTG 1 cut(s) 307
CciI TCATGA 1 cut(s) 336
Cfr10I RCCGGY 2 cut(s) 236, 240
ClaI ATCGAT 1 cut(s) 843
Csp6I GTAC 4 cut(s) 295, 448, 823, 946
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviAII CATG 3 cut(s) 337, 724, 862
CviQI GTAC 4 cut(s) 295, 448, 823, 946
DdeI CTNAG 3 cut(s) 230, 248, 798
DpnI GATC 2 cut(s) 36, 842
DpnII GATC 2 cut(s) 34, 840
EaeI YGGCCR 1 cut(s) 238
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 3 cut(s) 58, 214, 996
EarI CTCTTC 3 cut(s) 58, 214, 996
EciI GGCGGA 2 cut(s) 684, 946
EclXI CGGCCG 1 cut(s) 238
Eco52I CGGCCG 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 1020
Eco88I CYCGRG 2 cut(s) 263, 281
EcoRI GAATTC 1 cut(s) 703
FaeI CATG 3 cut(s) 340, 727, 865
FaiI YATR 8 cut(s) 120, 338, 417, 714, 716, 725, 863, 867
FalI AAGNNNNNCTT 2 cut(s) 434, 466
FaqI GGGAC 1 cut(s) 649
FatI CATG 3 cut(s) 336, 723, 861
FauI CCCGC 1 cut(s) 625
FblI GTMKAC 1 cut(s) 866
Fnu4HI GCNGC 4 cut(s) 6, 9, 12, 849
FokI GGATG 2 cut(s) 530, 1019
Fsp4HI GCNGC 4 cut(s) 6, 9, 12, 849
GluI GCNGC 4 cut(s) 6, 9, 12, 849
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 1 cut(s) 240
HapII CCGG 3 cut(s) 237, 241, 315
Hin1II CATG 3 cut(s) 340, 727, 865
HinfI GANTC 5 cut(s) 111, 311, 380, 392, 980
HpaII CCGG 3 cut(s) 237, 241, 315
HphI GGTGA 2 cut(s) 563, 584
Hpy166II GTNNAC 1 cut(s) 867
Hpy188I TCNGA 8 cut(s) 233, 346, 379, 747, 801, 979, 985, 1000
Hpy188III TCNNGA 7 cut(s) 218, 265, 283, 302, 337, 813, 964
Hpy8I GTNNAC 1 cut(s) 867
HpyAV CCTTC 4 cut(s) 417, 456, 655, 769
HpyCH4III ACNGT 2 cut(s) 364, 640
HpyCH4IV ACGT 1 cut(s) 920
HpyCH4V TGCA 6 cut(s) 8, 135, 829, 834, 848, 925
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 277, 694
HpyF3I CTNAG 3 cut(s) 230, 248, 798
HpySE526I ACGT 1 cut(s) 920
Hsp92II CATG 3 cut(s) 340, 727, 865
Kzo9I GATC 2 cut(s) 34, 840
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 856
Lsp1109I GCAGC 3 cut(s) 20, 23, 860
LweI GCATC 4 cut(s) 387, 462, 775, 835
MaeII ACGT 1 cut(s) 920
MaeIII GTNAC 1 cut(s) 878
MalI GATC 2 cut(s) 36, 842
MboI GATC 2 cut(s) 34, 840
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 286, 703, 788
MlyI GAGTC 3 cut(s) 320, 389, 401
MmeI TCCRAC 1 cut(s) 324
MseI TTAA 1 cut(s) 941
MslI CAYNNNNRTG 1 cut(s) 728
MspI CCGG 3 cut(s) 237, 241, 315
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 11, 277, 694
NciI CCSGG 1 cut(s) 316
NdeII GATC 2 cut(s) 34, 840
NlaIII CATG 3 cut(s) 340, 727, 865
NlaIV GGNNCC 2 cut(s) 36, 667
NmeAIII GCCGAG 1 cut(s) 415
NspI RCATGY 1 cut(s) 865
PaeR7I CTCGAG 2 cut(s) 263, 281
PagI TCATGA 1 cut(s) 336
PciI ACATGT 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 111, 980
PkrI GCNGC 4 cut(s) 7, 10, 13, 850
PleI GAGTC 3 cut(s) 319, 388, 400
PpsI GAGTC 3 cut(s) 319, 388, 400
PscI ACATGT 1 cut(s) 861
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 36, 667
PstI CTGCAG 1 cut(s) 10
PstNI CAGNNNCTG 1 cut(s) 307
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 4 cut(s) 296, 449, 824, 947
RsaNI GTAC 4 cut(s) 295, 448, 823, 946
RseI CAYNNNNRTG 1 cut(s) 728
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 941
SatI GCNGC 4 cut(s) 6, 9, 12, 849
Sau3AI GATC 2 cut(s) 34, 840
ScaI AGTACT 1 cut(s) 449
SchI GAGTC 3 cut(s) 320, 389, 401
ScrFI CCNGG 1 cut(s) 316
SfaNI GCATC 4 cut(s) 387, 462, 775, 835
SfcI CTRYAG 2 cut(s) 6, 171
Sfr274I CTCGAG 2 cut(s) 263, 281
SlaI CTCGAG 2 cut(s) 263, 281
SmiMI CAYNNNNRTG 1 cut(s) 728
SmlI CTYRAG 3 cut(s) 263, 272, 281
SmoI CTYRAG 3 cut(s) 263, 272, 281
Sse9I AATT 3 cut(s) 286, 703, 788
SsiI CCGC 5 cut(s) 43, 483, 632, 695, 931
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 364, 640
TaiI ACGT 1 cut(s) 923
TaqI TCGA 6 cut(s) 219, 264, 282, 320, 395, 843
TasI AATT 3 cut(s) 286, 703, 788
TatI WGTACW 2 cut(s) 447, 945
TfiI GAWTC 2 cut(s) 111, 980
Tru1I TTAA 1 cut(s) 941
Tru9I TTAA 1 cut(s) 941
TscAI CASTG 1 cut(s) 367
TseI GCWGC 4 cut(s) 5, 8, 11, 848
TspDTI ATGAA 3 cut(s) 270, 630, 1023
TspRI CASTG 1 cut(s) 367
XapI RAATTY 2 cut(s) 286, 703
XceI RCATGY 1 cut(s) 865
XhoI CTCGAG 2 cut(s) 263, 281
XmiI GTMKAC 1 cut(s) 866
ZrmI AGTACT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.