AT1G26180

Predicted membrane protein (DUF2232)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009555
Physical Location & Seq
Forward (+)
9054673 .. 9056941
2269 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26180.1

Sequence Viewer

Length: 870 bp
ATGAATCTCCTCAAGACGATTCATTACCAGTCTACCATTACTCGATTTTACCGTTTTGCCCCTACACGCTCCTTTGCTTCTTCTGTGTCACTCTCTCCACAGAGACACATAATCTCTCTCGTTTCTATCTCTAATCGTGGAAGGTGCTTCGCATTCTCGAGCGTCTCTGGTGCTTCGCTTTATAATAATCAAGAGGATGGGAAGAAAGAAGAATCCGAGAGAAATTACGCTTCGACGAAGGAAGGAGATGAAGTGGTTTACCAGAAAACGCTGAGATTAGTAGAATGTGCCATGTTCGCTGCTGTGACAGGCCTCGTTTACTTTCTCAGCAATTCTCTCGCCATTGAGAACTACTTTGGGTGTTTCTTCTCACTACCAATTGTGATTTCTTCGATAAGATGGAACATTGCAGGTGGCAGGAAGACAATGGTTGCTACTGTCATGCTGTTGTTCATATTATCAGGTCCGGTCAAGGCATTAACTTACTTTCTTACTCATGGTCTTGTGGGGCTTGCACTGGGATCATTGTGGAGTATGGGGGCAAGCTGGCGTCTCTCGATTTTCTTGTGCACAATGGTTCGAGCATTGGGTCTCATAGGCTATGTTCTGACATCATCCTTCTTAATAAGAGAAAATATTCTCGCTGTGATCACAATTAACATCCACGCTTCTCTCTCTTATGTTTTCACGGCCATGGGCCTGAACATAATGCCTTCGATGAGCCTCATTTATATGATATTTGGGACAGTGCTGTTACTTAACAGTGGATTCTTTGTGTTGTTGCTGCATCTGCTATACTCGATCTTCCTAACAAGACTAGGAATGAAATCTTCGTTGAGATTACCAGCCTGGTTGGACAAAGCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2232

Protein Analysis

289

Amino Acids

32.15

Weight (kDa)

9.75

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2232 PF09991 121 - 276 3.7e-06 Predicted membrane protein (DUF2232)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 183
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 32
AclWI GGATC 1 cut(s) 529
AcoI YGGCCR 1 cut(s) 690
AcyI GRCGYC 1 cut(s) 550
AjnI CCWGG 1 cut(s) 848
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 2 cut(s) 546, 863
AluI AGCT 2 cut(s) 546, 863
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 4 cut(s) 97, 169, 557, 596
Alw44I GTGCAC 1 cut(s) 568
AlwI GGATC 1 cut(s) 529
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 3 cut(s) 310, 690, 697
ApaLI GTGCAC 1 cut(s) 568
ApeKI GCWGC 2 cut(s) 299, 784
Asp700I GAANNNNTTC 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 464, 697
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 2 cut(s) 286, 771
BccI CCATC 2 cut(s) 191, 393
BceAI ACGGC 1 cut(s) 705
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BciT130I CCWGG 1 cut(s) 850
BclI TGATCA 1 cut(s) 648
BcoDI GTCTC 4 cut(s) 97, 169, 557, 596
BfaI CTAG 1 cut(s) 818
BfuAI ACCTGC 1 cut(s) 401
BisI GCNGC 2 cut(s) 300, 785
BlsI GCNGC 2 cut(s) 301, 786
Bme1390I CCNGG 1 cut(s) 850
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 464, 697
BmrFI CCNGG 1 cut(s) 850
BmrI ACTGGG 1 cut(s) 527
BmsI GCATC 1 cut(s) 796
BmuI ACTGGG 1 cut(s) 527
BpiI GAAGAC 1 cut(s) 428
BsaHI GRCGYC 1 cut(s) 550
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 1 cut(s) 693
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bse1I ACTGG 2 cut(s) 28, 522
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 1 cut(s) 850
BseDI CCNNGG 1 cut(s) 693
BseGI GGATG 3 cut(s) 202, 614, 660
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 263, 340
BseNI ACTGG 2 cut(s) 28, 522
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 2 cut(s) 286, 771
BshFI GGCC 3 cut(s) 312, 692, 699
BsiHKAI GWGCWC 1 cut(s) 572
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 1 cut(s) 757
BsmAI GTCTC 4 cut(s) 97, 169, 557, 596
BsmBI CGTCTC 2 cut(s) 169, 557
BsmFI GGGAC 1 cut(s) 757
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 3 cut(s) 312, 692, 699
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 3 cut(s) 521, 648, 801
Bsp19I CCATGG 1 cut(s) 693
BspANI GGCC 3 cut(s) 312, 692, 699
BspCNI CTCAG 2 cut(s) 264, 339
BspMI ACCTGC 1 cut(s) 401
BspPI GGATC 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 28, 522
BssECI CCNNGG 1 cut(s) 693
BssMI GATC 3 cut(s) 521, 648, 801
BssNI GRCGYC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 850
Bst4CI ACNGT 4 cut(s) 53, 439, 748, 764
BstACI GRCGYC 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 513, 544, 548
BstDEI CTNAG 2 cut(s) 272, 326
BstDSI CCRYGG 1 cut(s) 693
BstF5I GGATG 3 cut(s) 202, 614, 660
BstKTI GATC 3 cut(s) 524, 651, 804
BstMAI GTCTC 4 cut(s) 97, 169, 557, 596
BstMBI GATC 3 cut(s) 521, 648, 801
BstMWI GCNNNNNNNGC 2 cut(s) 296, 790
BstNI CCWGG 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 848
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 286, 771
BstV2I GAAGAC 1 cut(s) 428
BsuRI GGCC 3 cut(s) 312, 692, 699
BtgI CCRYGG 1 cut(s) 693
BtsCI GGATG 3 cut(s) 202, 614, 660
BtsIMutI CAGTG 3 cut(s) 515, 753, 769
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 3 cut(s) 513, 544, 548
Cfr13I GGNCC 2 cut(s) 464, 697
CseI GACGC 2 cut(s) 151, 539
CviAII CATG 4 cut(s) 292, 442, 497, 694
CviJI RGCY 9 cut(s) 312, 511, 546, 600, 692, 699, 723, 848, 863
CviKI_1 RGCY 9 cut(s) 312, 511, 546, 600, 692, 699, 723, 848, 863
DdeI CTNAG 2 cut(s) 272, 326
DpnI GATC 3 cut(s) 523, 650, 803
DpnII GATC 3 cut(s) 521, 648, 801
EaeI YGGCCR 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 693
Eco147I AGGCCT 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 464
Eco88I CYCGRG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 848
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
Esp3I CGTCTC 2 cut(s) 169, 557
FaeI CATG 4 cut(s) 295, 445, 500, 697
FaqI GGGAC 1 cut(s) 757
FatI CATG 4 cut(s) 291, 441, 496, 693
FbaI TGATCA 1 cut(s) 648
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 300, 785
FokI GGATG 3 cut(s) 209, 601, 647
Fsp4HI GCNGC 2 cut(s) 300, 785
FspBI CTAG 1 cut(s) 818
GluI GCNGC 2 cut(s) 300, 785
HaeIII GGCC 3 cut(s) 312, 692, 699
HapII CCGG 1 cut(s) 467
HgaI GACGC 2 cut(s) 151, 539
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 4 cut(s) 295, 445, 500, 697
HinfI GANTC 4 cut(s) 4, 19, 212, 768
HpaII CCGG 1 cut(s) 467
Hpy166II GTNNAC 4 cut(s) 33, 259, 319, 570
Hpy188I TCNGA 2 cut(s) 217, 609
Hpy188III TCNNGA 4 cut(s) 13, 157, 191, 556
Hpy8I GTNNAC 4 cut(s) 33, 259, 319, 570
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 5 cut(s) 135, 232, 236, 628, 723
HpyCH4III ACNGT 4 cut(s) 53, 439, 748, 764
HpyCH4V TGCA 4 cut(s) 410, 515, 570, 787
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 790
HpyF3I CTNAG 2 cut(s) 272, 326
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 4 cut(s) 295, 445, 500, 697
Ksp22I TGATCA 1 cut(s) 648
Kzo9I GATC 3 cut(s) 521, 648, 801
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 2 cut(s) 286, 771
LweI GCATC 1 cut(s) 796
MaeI CTAG 1 cut(s) 818
MaeIII GTNAC 3 cut(s) 87, 304, 753
MalI GATC 3 cut(s) 523, 650, 803
MboI GATC 3 cut(s) 521, 648, 801
MboII GAAGA 8 cut(s) 72, 214, 221, 358, 381, 433, 796, 822
MfeI CAATTG 1 cut(s) 378
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 4 cut(s) 223, 331, 378, 654
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 4 cut(s) 20, 187, 323, 734
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 4 cut(s) 479, 623, 657, 759
MslI CAYNNNNRTG 2 cut(s) 692, 731
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 850
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 152
MvaI CCWGG 1 cut(s) 850
MwoI GCNNNNNNNGC 2 cut(s) 296, 790
NcoI CCATGG 1 cut(s) 693
NdeII GATC 3 cut(s) 521, 648, 801
NlaIII CATG 4 cut(s) 295, 445, 500, 697
NmuCI GTSAC 2 cut(s) 87, 304
PaeR7I CTCGAG 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 49
PctI GAATGC 1 cut(s) 152
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 4 cut(s) 4, 19, 212, 768
PkrI GCNGC 2 cut(s) 301, 786
PsiI TTATAA 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 848
PspGI CCWGG 1 cut(s) 848
PspPI GGNCC 2 cut(s) 464, 697
RseI CAYNNNNRTG 2 cut(s) 692, 731
SaqAI TTAA 4 cut(s) 479, 623, 657, 759
SatI GCNGC 2 cut(s) 300, 785
Sau3AI GATC 3 cut(s) 521, 648, 801
Sau96I GGNCC 2 cut(s) 464, 697
ScrFI CCNGG 1 cut(s) 850
SduI GDGCHC 1 cut(s) 572
SetI ASST 5 cut(s) 146, 415, 466, 548, 865
SfaNI GCATC 1 cut(s) 796
Sfr274I CTCGAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 157
SmiMI CAYNNNNRTG 2 cut(s) 692, 731
SmlI CTYRAG 2 cut(s) 11, 157
SmoI CTYRAG 2 cut(s) 11, 157
Sse9I AATT 4 cut(s) 223, 331, 378, 654
SseBI AGGCCT 1 cut(s) 312
SspI AATATT 1 cut(s) 637
SspMI CTAG 1 cut(s) 818
StuI AGGCCT 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 848
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 4 cut(s) 53, 439, 748, 764
TaqI TCGA 8 cut(s) 43, 158, 233, 392, 557, 580, 716, 800
TasI AATT 4 cut(s) 223, 331, 378, 654
TfiI GAWTC 4 cut(s) 4, 19, 212, 768
Tru1I TTAA 4 cut(s) 479, 623, 657, 759
Tru9I TTAA 4 cut(s) 479, 623, 657, 759
TscAI CASTG 3 cut(s) 522, 753, 769
TseFI GTSAC 2 cut(s) 87, 304
TseI GCWGC 2 cut(s) 299, 784
Tsp45I GTSAC 2 cut(s) 87, 304
TspDTI ATGAA 5 cut(s) 11, 17, 264, 442, 839
TspRI CASTG 3 cut(s) 522, 753, 769
VneI GTGCAC 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 1 cut(s) 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.