Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009555

Physical Location & Seq

Genomic Coordinates Forward (+)

57400621 .. 57403127

Gene Structure 2507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG352600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGATTCCTCTGCAAATTCAGCACCTCACTCCACCCTTGTCAATTTCCCAAACTACCCCTCTCTCCTCTCTCCCTTCCCTTCCTCACCTCCTCTCTCAAAGACTCGACCTTTCCCTCAGACCCAACCCCTTCACCTTCTCCCCAATTTCACTGCCCAAACCCACCCTCAAGCTCTCAAGGGCGTCGCAAAGTCGATCGCTTTTCTTCGGAAATGAGGAGGACACCGCCGGAATTTCAACTGACCTCGACGACTTGTCCCCAAACGGCGTCGTTCACCGGAAAACATTGGCATTGGTTGAGTGCTCCATGTTTGCTGCGCTTACTGGGTTGGTGTATTTCCTCAGCAATTCTCTCGCAATTGAGAATTACTTTGGTTGCTTCTTTTCGCTGCCGATAGTGATCACCTCAATGAGATGGGGCACCGCAGCTGGAAGAAAAACTATGGTGGCAACGACTATGCTATTACTTGTCTTGTCTGGTCCGGTGAAAGCCTTAACCTATTTGCTTAAGCATGGATTAGTTGGCTTTACAATGGGAAGTTTGTGGAGGTCGGGAGCAAATTGGACTATTTCAGTTTTCTTGTGTGCAATTGTAGTGTTTTCTCCTTACTGCTATGAATTCATTATATATGTTGAAGCAATATTTCTTGTCTCTAATTCTATAATTAAAATGTTTGATTTCATATGCAGGTTCGAGCATTGGGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2232

Protein Analysis

236

Amino Acids

26.21

Weight (kDa)

8.63

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26180 AT1G26180
fragaria_vesca	FvH4_4g28590 FvH4_4g28590
malus_domestica	MD13G1052300.v1.1 MD16G1057600.v1.1
prunus_persica	Prupe.1G299800_v2.0.a1
pyrus_communis	pycom03g00020 pycom13g04660 pycom16g05040
rosa_chinensis	RchiOBHm_Chr4g0436681
rosa_laevigata	RLG00000006504
rosa_multiflora	Rmu_sc0003130.1_g000020 Rmu_sc0007889.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377760
rosa_rugosa	Rorug04G0295200
rosa_samantha	Rh4AG040800 Rh4AG349700 Rh4BG358400 Rh4CG372800 Rh4DG352600
rosa_wichuraiana	Rw4G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	678
AccB1I	GGYRCC	1 cut(s)	419
AciI	CCGC	2 cut(s)	225, 423
AcsI	RAATTY	3 cut(s)	15, 231, 617
AcyI	GRCGYC	2 cut(s)	182, 267
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	2 cut(s)	237, 635
AhdI	GACNNNNNGTC	1 cut(s)	253
AluBI	AGCT	2 cut(s)	172, 428
AluI	AGCT	2 cut(s)	172, 428
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	314, 388, 425
ApoI	RAATTY	3 cut(s)	15, 231, 617
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	5 cut(s)	77, 124, 266, 394, 496
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	341
BbvI	GCAGC	3 cut(s)	301, 375, 437
BccI	CCATC	1 cut(s)	408
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BclI	TGATCA	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	655
BfmI	CTRYAG	1 cut(s)	707
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	678
BisI	GCNGC	3 cut(s)	315, 389, 426
BlsI	GCNGC	3 cut(s)	316, 390, 427
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	2 cut(s)	152, 160
BsaBI	GATNNNNATC	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	182, 267
BsaWI	WCCGGW	2 cut(s)	276, 481
Bse1I	ACTGG	1 cut(s)	328
Bse8I	GATNNNNATC	1 cut(s)	398
BseJI	GATNNNNATC	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	130, 355
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	3 cut(s)	55, 80, 230
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	301, 375, 437
Bsh1285I	CGRYCG	1 cut(s)	197
BshNI	GGYRCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	228, 277, 482
BslFI	GGGAC	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	305, 422
Bsp143I	GATC	2 cut(s)	194, 399
BspACI	CCGC	2 cut(s)	225, 423
BspCNI	CTCAG	2 cut(s)	129, 354
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	678
BspT107I	GGYRCC	1 cut(s)	419
BspTI	CTTAAG	1 cut(s)	506
BsrI	ACTGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	194, 399
BssNI	GRCGYC	2 cut(s)	182, 267
BstACI	GRCGYC	2 cut(s)	182, 267
BstAFI	CTTAAG	1 cut(s)	506
BstDEI	CTNAG	2 cut(s)	116, 341
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	2 cut(s)	197, 402
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	2 cut(s)	194, 399
BstMCI	CGRYCG	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	707
BstSLI	GKGCMC	1 cut(s)	422
BstV1I	GCAGC	3 cut(s)	301, 375, 437
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	678
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	2 cut(s)	171, 256
CviAII	CATG	2 cut(s)	307, 512
CviJI	RGCY	4 cut(s)	172, 428, 491, 525
CviKI_1	RGCY	4 cut(s)	172, 428, 491, 525
DdeI	CTNAG	2 cut(s)	116, 341
DpnI	GATC	2 cut(s)	196, 401
DpnII	GATC	2 cut(s)	194, 399
DriI	GACNNNNNGTC	1 cut(s)	253
Eam1105I	GACNNNNNGTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	617
FaeI	CATG	2 cut(s)	310, 515
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	306, 511
FauNDI	CATATG	1 cut(s)	683
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	3 cut(s)	315, 389, 426
Fsp4HI	GCNGC	3 cut(s)	315, 389, 426
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	3 cut(s)	315, 389, 426
HapII	CCGG	3 cut(s)	228, 277, 482
HgaI	GACGC	2 cut(s)	171, 256
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	2 cut(s)	182, 267
Hin1II	CATG	2 cut(s)	310, 515
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	4, 102
HpaII	CCGG	3 cut(s)	228, 277, 482
HphI	GGTGA	5 cut(s)	77, 124, 266, 394, 496
Hpy166II	GTNNAC	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	119, 209
Hpy188III	TCNNGA	1 cut(s)	552
Hpy8I	GTNNAC	1 cut(s)	274
Hpy99I	CGWCG	3 cut(s)	187, 251, 272
HpyAV	CCTTC	4 cut(s)	84, 89, 139, 145
HpyCH4V	TGCA	3 cut(s)	13, 587, 687
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	116, 341
Hsp92I	GRCGYC	2 cut(s)	182, 267
Hsp92II	CATG	2 cut(s)	310, 515
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	194, 399
LmnI	GCTCC	2 cut(s)	308, 554
LpnPI	CCDG	7 cut(s)	241, 290, 309, 414, 462, 495, 673
Lsp1109I	GCAGC	3 cut(s)	301, 375, 437
MalI	GATC	2 cut(s)	196, 401
MboI	GATC	2 cut(s)	194, 399
MboII	GAAGA	2 cut(s)	196, 444
MfeI	CAATTG	2 cut(s)	357, 588
MhlI	GDGCHC	2 cut(s)	305, 422
MlyI	GAGTC	1 cut(s)	96
MseI	TTAA	3 cut(s)	494, 507, 666
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	3 cut(s)	228, 277, 482
MunI	CAATTG	2 cut(s)	357, 588
MwoI	GCNNNNNNNGC	1 cut(s)	19
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	2 cut(s)	194, 399
NlaIII	CATG	2 cut(s)	310, 515
NlaIV	GGNNCC	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	3 cut(s)	316, 390, 427
Ple19I	CGATCG	1 cut(s)	197
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	407
SaqAI	TTAA	3 cut(s)	494, 507, 666
SatI	GCNGC	3 cut(s)	315, 389, 426
Sau3AI	GATC	2 cut(s)	194, 399
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	96
SduI	GDGCHC	2 cut(s)	305, 422
SfcI	CTRYAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	407
SmlI	CTYRAG	3 cut(s)	167, 175, 506
SmoI	CTYRAG	3 cut(s)	167, 175, 506
SsiI	CCGC	2 cut(s)	225, 423
SspI	AATATT	1 cut(s)	642
TaqI	TCGA	4 cut(s)	105, 193, 246, 693
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	3 cut(s)	494, 507, 666
Tru9I	TTAA	3 cut(s)	494, 507, 666
TscAI	CASTG	1 cut(s)	156
TseI	GCWGC	3 cut(s)	314, 388, 425
TspDTI	ATGAA	3 cut(s)	610, 630, 670
TspRI	CASTG	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	3 cut(s)	15, 231, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.