Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009555

Physical Location & Seq

Genomic Coordinates Reverse (-)

29484067 .. 29486413

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G299800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATTCCCCTGCAAATTCACCACCTCACCCCATCATTCTTCATTTCCAAAACTACCCCTCTCCACTCTTCTCTCCCTCTTCCTCACCTTATCTCTCCCACCTCTCAAAGAACCAAAATTTATCTCAAACCCAACCCCTTTTCGTTTCCCCCAATTTTACTATCCAACCCCACCTTCAAATTTGTTAGGGCATCAGCAAGTCAAGCATCATCATTTTCTACAAATGAAGAAGAAAGCACTGAAATTTCACCCGAGCTTGAAGACTTATCGCCCGACGGCGTCGTTTATAAGAAGACATTAGCATTGGTGGAGTGCTCCATGTTTGCTGCACTTACTGGCTTGGTGTACTTCCTCAGCAATTCTCTCGCAATTGAGAATTATTTTGGCTGCTTCTTCTCGTTGCCAATAGTGATCACCTCAATGAGATGGGGCATCAGTACTGGAAGAAAAACTATGGTGGCAACAACTATGCTATTACTAGTTTTGTCTGGTCCAGTGAAAGCCTTAACTTATCTGCTTAAGCATGGTTTAGTTGGTTTCACAATGGGAGGTTTATGGAGGTCGGGAGCAAATTGGGGTCTTTCAATTCTCTTGTGCACAATTGTTCGATCACTGGGCGCTGTAGGCTATGTTTTGATATCTTCATTCTTGATAAGTGAAAACATACTTGCTTTGATCACTATAAACATTCATGCTTCTCTAACATTCATATTCACTGCGTCGGGCATCTATACAGTCCCGTCGATGGGAGTGATATATGCCTTATTTGGCACTCTGGTATTGATCAACAGTGGATCCTTCATGTTCTTGCTGCACCTATTGTATTCGGTGTTCCTTACCAGGCTTGGAATGAAATCATCATTGAGATTGCCAAGATGGCTAGAGAAGGCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2232

Protein Analysis

299

Amino Acids

32.73

Weight (kDa)

9.49

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26180 AT1G26180
fragaria_vesca	FvH4_4g28590 FvH4_4g28590
malus_domestica	MD13G1052300.v1.1 MD16G1057600.v1.1
prunus_persica	Prupe.1G299800_v2.0.a1
pyrus_communis	pycom03g00020 pycom13g04660 pycom16g05040
rosa_chinensis	RchiOBHm_Chr4g0436681
rosa_laevigata	RLG00000006504
rosa_multiflora	Rmu_sc0003130.1_g000020 Rmu_sc0007889.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377760
rosa_rugosa	Rorug04G0295200
rosa_samantha	Rh4AG040800 Rh4AG349700 Rh4BG358400 Rh4CG372800 Rh4DG352600
rosa_wichuraiana	Rw4G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AclWI	GGATC	2 cut(s)	789, 802
AcsI	RAATTY	4 cut(s)	15, 117, 179, 243
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	2 cut(s)	347, 439
AfiI	CCNNNNNNNGG	2 cut(s)	745, 746
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	178, 260, 585
AhlI	ACTAGT	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	839
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw21I	GWGCWC	2 cut(s)	317, 599
Alw44I	GTGCAC	1 cut(s)	595
AlwI	GGATC	2 cut(s)	789, 802
Ama87I	CYCGRG	1 cut(s)	251
ApaLI	GTGCAC	1 cut(s)	595
ApeKI	GCWGC	3 cut(s)	326, 387, 811
ApoI	RAATTY	4 cut(s)	15, 117, 179, 243
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	1 cut(s)	491
AsuHPI	GGTGA	5 cut(s)	11, 19, 77, 240, 406
AvaI	CYCGRG	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	599
BamHI	GGATCC	1 cut(s)	794
BbsI	GAAGAC	2 cut(s)	267, 299
Bbv12I	GWGCWC	2 cut(s)	317, 599
BbvCI	CCTCAGC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	313, 374, 798
BccI	CCATC	4 cut(s)	40, 420, 739, 870
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	1 cut(s)	841
BclI	TGATCA	3 cut(s)	411, 675, 783
BcuI	ACTAGT	1 cut(s)	478
BfaI	CTAG	2 cut(s)	479, 881
BfmI	CTRYAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	877
BisI	GCNGC	3 cut(s)	327, 388, 812
BlsI	GCNGC	3 cut(s)	328, 389, 813
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	841
Bme18I	GGWCC	1 cut(s)	491
BmeT110I	CYCGRG	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	1 cut(s)	796
BmrFI	CCNGG	1 cut(s)	841
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	4 cut(s)	200, 215, 441, 735
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	2 cut(s)	267, 299
Bpu10I	CCTNAGC	1 cut(s)	353
BsaHI	GRCGYC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 746
Bse1I	ACTGG	4 cut(s)	340, 445, 494, 618
BseBI	CCWGG	1 cut(s)	841
BseLI	CCNNNNNNNGG	2 cut(s)	745, 746
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	4 cut(s)	340, 445, 494, 618
BseSI	GKGCMC	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	313, 374, 798
BsgI	GTGCAG	2 cut(s)	312, 797
BsiHKAI	GWGCWC	2 cut(s)	317, 599
BsiHKCI	CYCGRG	1 cut(s)	251
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	745, 746
BsmFI	GGGAC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	317, 599
Bsp143I	GATC	5 cut(s)	411, 608, 675, 783, 794
BspCNI	CTCAG	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	796
BspPI	GGATC	2 cut(s)	789, 802
BspTI	CTTAAG	1 cut(s)	518
BsrI	ACTGG	4 cut(s)	340, 445, 494, 618
BssMI	GATC	5 cut(s)	411, 608, 675, 783, 794
BssNI	GRCGYC	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	841
Bst4CI	ACNGT	2 cut(s)	736, 791
Bst6I	CTCTTC	2 cut(s)	73, 84
BstACI	GRCGYC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	518
BstDEI	CTNAG	1 cut(s)	353
BstH2I	RGCGCY	1 cut(s)	621
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	5 cut(s)	414, 611, 678, 786, 797
BstMBI	GATC	5 cut(s)	411, 608, 675, 783, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 624, 877
BstNI	CCWGG	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	1 cut(s)	621
BstSLI	GKGCMC	1 cut(s)	599
BstV1I	GCAGC	3 cut(s)	313, 374, 798
BstV2I	GAAGAC	2 cut(s)	267, 299
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	5 cut(s)	237, 501, 611, 714, 796
CfoI	GCGC	1 cut(s)	620
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	2 cut(s)	268, 708
Csp6I	GTAC	2 cut(s)	346, 438
CviAII	CATG	4 cut(s)	319, 524, 692, 802
CviJI	RGCY	8 cut(s)	256, 339, 387, 503, 627, 844, 880, 890
CviKI_1	RGCY	8 cut(s)	256, 339, 387, 503, 627, 844, 880, 890
CviQI	GTAC	2 cut(s)	346, 438
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	5 cut(s)	413, 610, 677, 785, 796
DpnII	GATC	5 cut(s)	411, 608, 675, 783, 794
Eam1104I	CTCTTC	2 cut(s)	73, 84
EarI	CTCTTC	2 cut(s)	73, 84
Eco32I	GATATC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	839
EcoRV	GATATC	1 cut(s)	639
FaeI	CATG	4 cut(s)	322, 527, 695, 805
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	4 cut(s)	318, 523, 691, 801
FbaI	TGATCA	3 cut(s)	411, 675, 783
Fnu4HI	GCNGC	3 cut(s)	327, 388, 812
Fsp4HI	GCNGC	3 cut(s)	327, 388, 812
FspBI	CTAG	2 cut(s)	479, 881
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	3 cut(s)	327, 388, 812
HaeII	RGCGCY	1 cut(s)	621
HgaI	GACGC	2 cut(s)	268, 708
HhaI	GCGC	1 cut(s)	620
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	322, 527, 695, 805
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	5 cut(s)	11, 19, 77, 240, 406
Hpy166II	GTNNAC	2 cut(s)	346, 597
Hpy188III	TCNNGA	2 cut(s)	564, 649
Hpy8I	GTNNAC	2 cut(s)	346, 597
Hpy99I	CGWCG	4 cut(s)	278, 284, 724, 745
HpyAV	CCTTC	3 cut(s)	184, 808, 880
HpyCH4III	ACNGT	2 cut(s)	736, 791
HpyCH4V	TGCA	4 cut(s)	13, 329, 597, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 624, 877
HpyF3I	CTNAG	1 cut(s)	353
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	322, 527, 695, 805
HspAI	GCGC	1 cut(s)	618
Ksp22I	TGATCA	3 cut(s)	411, 675, 783
Kzo9I	GATC	5 cut(s)	411, 608, 675, 783, 794
LmnI	GCTCC	2 cut(s)	320, 566
LpnPI	CCDG	9 cut(s)	23, 321, 426, 474, 507, 599, 761, 826, 853
Lsp1109I	GCAGC	3 cut(s)	313, 374, 798
LweI	GCATC	4 cut(s)	200, 215, 441, 735
MaeI	CTAG	2 cut(s)	479, 881
MalI	GATC	5 cut(s)	413, 610, 677, 785, 796
MboI	GATC	5 cut(s)	411, 608, 675, 783, 794
MfeI	CAATTG	2 cut(s)	369, 600
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	2 cut(s)	317, 599
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	9 cut(s)	35, 69, 87, 93, 112, 362, 427, 542, 552
MseI	TTAA	2 cut(s)	506, 519
MslI	CAYNNNNRTG	1 cut(s)	419
MspCI	CTTAAG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	841
MunI	CAATTG	2 cut(s)	369, 600
MvaI	CCWGG	1 cut(s)	841
MwoI	GCNNNNNNNGC	3 cut(s)	203, 624, 877
NdeII	GATC	5 cut(s)	411, 608, 675, 783, 794
NlaIII	CATG	4 cut(s)	322, 527, 695, 805
NlaIV	GGNNCC	1 cut(s)	796
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	3 cut(s)	328, 389, 813
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	839
PspN4I	GGNNCC	1 cut(s)	796
PspPI	GGNCC	1 cut(s)	491
PsrI	GAACNNNNNNTAC	2 cut(s)	815, 847
PsuI	RGATCY	1 cut(s)	794
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	347, 439
RsaNI	GTAC	2 cut(s)	346, 438
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	506, 519
SatI	GCNGC	3 cut(s)	327, 388, 812
Sau3AI	GATC	5 cut(s)	411, 608, 675, 783, 794
Sau96I	GGNCC	1 cut(s)	491
ScaI	AGTACT	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	841
SduI	GDGCHC	2 cut(s)	317, 599
SetI	ASST	9 cut(s)	27, 90, 104, 176, 258, 419, 553, 563, 819
SfaNI	GCATC	4 cut(s)	200, 215, 441, 735
SfcI	CTRYAG	1 cut(s)	621
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SpeI	ACTAGT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	479, 881
StyD4I	CCNGG	1 cut(s)	839
TaaI	ACNGT	2 cut(s)	736, 791
TaqI	TCGA	2 cut(s)	607, 743
TatI	WGTACW	2 cut(s)	345, 437
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	506, 519
Tru9I	TTAA	2 cut(s)	506, 519
TscAI	CASTG	5 cut(s)	244, 501, 618, 721, 796
TseI	GCWGC	3 cut(s)	326, 387, 811
TspDTI	ATGAA	7 cut(s)	31, 240, 633, 680, 697, 790, 866
TspRI	CASTG	5 cut(s)	244, 501, 618, 721, 796
Tth111I	GACNNNGTC	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	518
VneI	GTGCAC	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	491
XapI	RAATTY	4 cut(s)	15, 117, 179, 243
XspI	CTAG	2 cut(s)	479, 881
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.