Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009555

Physical Location & Seq

Genomic Coordinates Reverse (-)

3248542 .. 3250431

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05040.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGTGCATTGATCAAATTATGGGGTCCCAATCTAAAGCTTCTCTCCCGCTCTCGAGCTTCTCTCTCTGTGACCTCCATCTCCATGATTCCTCTGCAAGTCCACCACCTCCCCCCACCTTTCCTCATTTCCCAAACTACCCCTCTCCACTCTCTCTCTCCCACCTCTCAAACTGTCAAATTTTCCCCCAAGCCGAACCCCTTTTCGTCTTCCCCAATTTTGCTATCCAACCCCCCCTGCAAATTTCTCAGGGCAGCAGGAATCCAAACGTCGTCGCTTTGTAGAAATGAGGAAGAAAGCACTGAAATTTCGACCGAGCTCGAAGACTTGTCGCCGGACGGCGTCGTTTATAAGAAGACGTTAGCGTTGGTGGAGTGCTCCATGTTTGCTGCTCTCACTGGCCTGGTGTACTTCCTCAGCAATTCTCTCGCAATTGAGGATTACTTTGGCTGCTTCTTCTCGCTGCCGATAGTGATCACCTCAATGAGGTGGGGCATCGCTACTGGAAGAAAAACTATGGTTGCAACAACTATGCTATTGCTAGTCTTGTCTGGTCCGGTGAAAGCTTTAACCTATTTGCTAAAGCACGGTTTGGTTGGTTTTACAATGGGAAGTTTATGGAGGTTAGGAGCAAACTGGTGTCTTTCAATTTTCTTGTGCACAATTGTTCGATCGAACTGGGTGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2232

Protein Analysis

230

Amino Acids

25.1

Weight (kDa)

9.26

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26180 AT1G26180
fragaria_vesca	FvH4_4g28590 FvH4_4g28590
malus_domestica	MD13G1052300.v1.1 MD16G1057600.v1.1
prunus_persica	Prupe.1G299800_v2.0.a1
pyrus_communis	pycom03g00020 pycom13g04660 pycom16g05040
rosa_chinensis	RchiOBHm_Chr4g0436681
rosa_laevigata	RLG00000006504
rosa_multiflora	Rmu_sc0003130.1_g000020 Rmu_sc0007889.1_g000001
rosa_roxburghii	Rroxscaffold_5G00377760
rosa_rugosa	Rorug04G0295200
rosa_samantha	Rh4AG040800 Rh4AG349700 Rh4BG358400 Rh4CG372800 Rh4DG352600
rosa_wichuraiana	Rw4G030590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
AccBSI	CCGCTC	1 cut(s)	51
AciI	CCGC	1 cut(s)	49
AcsI	RAATTY	3 cut(s)	179, 242, 306
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	486
AgsI	TTSAA	1 cut(s)	648
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	4 cut(s)	40, 59, 319, 566
AluI	AGCT	4 cut(s)	40, 59, 319, 566
Alw21I	GWGCWC	3 cut(s)	321, 380, 662
Alw44I	GTGCAC	1 cut(s)	658
Ama87I	CYCGRG	1 cut(s)	54
AoxI	GGCC	1 cut(s)	400
ApaLI	GTGCAC	1 cut(s)	658
ApeKI	GCWGC	4 cut(s)	254, 389, 450, 463
ApoI	RAATTY	3 cut(s)	179, 242, 306
AspS9I	GGNCC	2 cut(s)	26, 554
AsuHPI	GGTGA	2 cut(s)	469, 571
AvaI	CYCGRG	1 cut(s)	54
AvaII	GGWCC	2 cut(s)	26, 554
BaeGI	GKGCMC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	3 cut(s)	201, 330, 362
Bbv12I	GWGCWC	3 cut(s)	321, 380, 662
BbvCI	CCTCAGC	1 cut(s)	416
BbvI	GCAGC	4 cut(s)	266, 376, 437, 450
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	3 cut(s)	409, 443, 664
BciT130I	CCWGG	1 cut(s)	404
BclI	TGATCA	2 cut(s)	12, 474
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	686
BisI	GCNGC	4 cut(s)	255, 390, 451, 464
BlsI	GCNGC	4 cut(s)	256, 391, 452, 465
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	2 cut(s)	26, 554
BmeT110I	CYCGRG	1 cut(s)	54
BmgT120I	GGNCC	2 cut(s)	26, 554
BmiI	GGNNCC	2 cut(s)	27, 28
BmrFI	CCNGG	1 cut(s)	404
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	688
BpiI	GAAGAC	3 cut(s)	201, 330, 362
BplI	GAGNNNNNCTC	2 cut(s)	48, 80
Bpu10I	CCTNAGC	1 cut(s)	416
BsaBI	GATNNNNATC	1 cut(s)	473
BsaHI	GRCGYC	1 cut(s)	342
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	4 cut(s)	403, 508, 641, 683
Bse8I	GATNNNNATC	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	404
BseJI	GATNNNNATC	1 cut(s)	473
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	262, 430
BseNI	ACTGG	4 cut(s)	403, 508, 641, 683
BseSI	GKGCMC	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	266, 376, 437, 450
Bsh1285I	CGRYCG	2 cut(s)	315, 674
BshFI	GGCC	1 cut(s)	402
BsiEI	CGRYCG	2 cut(s)	315, 674
BsiHKAI	GWGCWC	3 cut(s)	321, 380, 662
BsiHKCI	CYCGRG	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	335, 557
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	54
Bsp1286I	GDGCHC	3 cut(s)	321, 380, 662
Bsp143I	GATC	3 cut(s)	12, 474, 671
BspACI	CCGC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	261, 429
BspLI	GGNNCC	2 cut(s)	27, 28
BsrBI	CCGCTC	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	403, 508, 641, 683
BssMI	GATC	3 cut(s)	12, 474, 671
BssNI	GRCGYC	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	175, 590
BstACI	GRCGYC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	248, 416
BstENI	CCTNNNNNAGG	1 cut(s)	484
BstKTI	GATC	3 cut(s)	15, 477, 674
BstMBI	GATC	3 cut(s)	12, 474, 671
BstMCI	CGRYCG	2 cut(s)	315, 674
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	1 cut(s)	686
BstSLI	GKGCMC	1 cut(s)	662
BstV1I	GCAGC	4 cut(s)	266, 376, 437, 450
BstV2I	GAAGAC	3 cut(s)	201, 330, 362
BsuRI	GGCC	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	481
BtsIMutI	CAGTG	2 cut(s)	300, 396
Cfr13I	GGNCC	2 cut(s)	26, 554
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	2 cut(s)	85, 382
CviJI	RGCY	7 cut(s)	40, 59, 193, 319, 402, 450, 566
CviKI_1	RGCY	7 cut(s)	40, 59, 193, 319, 402, 450, 566
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	248, 416
DpnI	GATC	3 cut(s)	14, 476, 673
DpnII	GATC	3 cut(s)	12, 474, 671
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	26, 554
Eco53kI	GAGCTC	1 cut(s)	319
Eco88I	CYCGRG	1 cut(s)	54
EcoICRI	GAGCTC	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	484
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	2 cut(s)	88, 385
FaiI	YATR	7 cut(s)	22, 86, 351, 383, 518, 533, 619
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	2 cut(s)	84, 381
FauI	CCCGC	1 cut(s)	56
FbaI	TGATCA	2 cut(s)	12, 474
Fnu4HI	GCNGC	4 cut(s)	255, 390, 451, 464
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	4 cut(s)	255, 390, 451, 464
FspBI	CTAG	1 cut(s)	542
GluI	GCNGC	4 cut(s)	255, 390, 451, 464
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	2 cut(s)	335, 557
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	2 cut(s)	88, 385
HindIII	AAGCTT	2 cut(s)	38, 564
HinfI	GANTC	2 cut(s)	88, 261
HpaII	CCGG	2 cut(s)	335, 557
HphI	GGTGA	2 cut(s)	469, 571
Hpy166II	GTNNAC	3 cut(s)	103, 409, 660
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	3 cut(s)	103, 409, 660
Hpy99I	CGWCG	3 cut(s)	274, 277, 347
HpyCH4III	ACNGT	2 cut(s)	175, 590
HpyCH4IV	ACGT	2 cut(s)	269, 359
HpyCH4V	TGCA	5 cut(s)	8, 97, 240, 524, 660
HpyF3I	CTNAG	2 cut(s)	248, 416
HpySE526I	ACGT	2 cut(s)	269, 359
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	2 cut(s)	88, 385
KflI	GGGWCCC	1 cut(s)	26
Ksp22I	TGATCA	2 cut(s)	12, 474
Kzo9I	GATC	3 cut(s)	12, 474, 671
LmnI	GCTCC	2 cut(s)	383, 629
Lsp1109I	GCAGC	4 cut(s)	266, 376, 437, 450
LweI	GCATC	1 cut(s)	504
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	2 cut(s)	269, 359
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	3 cut(s)	14, 476, 673
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	3 cut(s)	12, 474, 671
MboII	GAAGA	6 cut(s)	201, 305, 335, 367, 448, 519
MfeI	CAATTG	2 cut(s)	432, 663
MhlI	GDGCHC	3 cut(s)	321, 380, 662
MluCI	AATT	9 cut(s)	17, 179, 216, 242, 306, 421, 432, 648, 663
MmeI	TCCRAC	1 cut(s)	252
MseI	TTAA	1 cut(s)	569
MslI	CAYNNNNRTG	2 cut(s)	83, 482
MspI	CCGG	2 cut(s)	335, 557
MspR9I	CCNGG	1 cut(s)	404
MunI	CAATTG	2 cut(s)	432, 663
MvaI	CCWGG	1 cut(s)	404
NdeII	GATC	3 cut(s)	12, 474, 671
NlaIII	CATG	2 cut(s)	88, 385
NlaIV	GGNNCC	2 cut(s)	27, 28
NmuCI	GTSAC	1 cut(s)	70
PaeR7I	CTCGAG	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	88, 261
PflFI	GACNNNGTC	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	256, 391, 452, 465
Ple19I	CGATCG	1 cut(s)	674
PpuMI	RGGWCCY	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	27, 28
PspPI	GGNCC	2 cut(s)	26, 554
PspPPI	RGGWCCY	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	674
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	2 cut(s)	83, 482
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	569
SatI	GCNGC	4 cut(s)	255, 390, 451, 464
Sau3AI	GATC	3 cut(s)	12, 474, 671
Sau96I	GGNCC	2 cut(s)	26, 554
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	3 cut(s)	321, 380, 662
SfaNI	GCATC	1 cut(s)	504
SfcI	CTRYAG	1 cut(s)	686
Sfr274I	CTCGAG	1 cut(s)	54
SinI	GGWCC	2 cut(s)	26, 554
SlaI	CTCGAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	2 cut(s)	83, 482
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	9 cut(s)	17, 179, 216, 242, 306, 421, 432, 648, 663
SsiI	CCGC	1 cut(s)	49
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	2 cut(s)	175, 590
TaiI	ACGT	2 cut(s)	272, 362
TaqI	TCGA	5 cut(s)	55, 311, 321, 670, 674
TaqII	GACCGA	1 cut(s)	329
TasI	AATT	9 cut(s)	17, 179, 216, 242, 306, 421, 432, 648, 663
TatI	WGTACW	1 cut(s)	408
TfiI	GAWTC	2 cut(s)	88, 261
Tru1I	TTAA	1 cut(s)	569
Tru9I	TTAA	1 cut(s)	569
TscAI	CASTG	2 cut(s)	307, 403
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	4 cut(s)	254, 389, 450, 463
Tsp45I	GTSAC	1 cut(s)	70
TspRI	CASTG	2 cut(s)	307, 403
Tth111I	GACNNNGTC	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	658
VpaK11BI	GGWCC	2 cut(s)	26, 554
XagI	CCTNNNNNAGG	1 cut(s)	484
XapI	RAATTY	3 cut(s)	179, 242, 306
XhoI	CTCGAG	1 cut(s)	54
XspI	CTAG	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.