Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Reverse (-)

9143937 .. 9146106

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATGATAGCTCAAGAATTGGGAATATATGTTGTGGAGAGCAAAGGAGGAGCAATATTATGTCTATTGCTTTCTCTGCTCTGTTTAGGCACTTGGCCTGCTCTTATGGCTCTTCTTGAACGGCGTGGTCGTCTCCCACAACATACTTATCTTGATTATTCCATCACTAACTTTTTGGCTGCAATCTTTATAGCCTTTGTGTTTGGTGGGATAGGTGAAAGTACACATGAGGCACCAAGTTTCATTACACAACTCACTCAGATTCAAGATAATTGGCCCTCTGTGTTGTTTGCAATGGCGGGCACTACTGTCAATTACTTTTTGGACAACGGATTGAACAGAGCTGATATTCTTTTCTCTGGTGTTGGTTGCTTCATGGTAGCTGTTTGTCTTGGTTCTGCTGTTCACTCTTCCAATTCTGCTGATATCAAGGCGAAACTCGGAAAACTCTCAGGGGATTGTGAAACTGTGACCCCTGAAGAGTGCCAGAGACTATTTGGAGAAGAAGAAGAAGAAGAAGAAAAAGAGATGGAGAATGTAAAGGAAGGGTCTGCAGCTTTTCTTATAGCACTCGAAAACAAAAGAGCAATCAAAGTGTTAGGAAAGAGCATGGTTGTTGGTCTGGGAATAACTTTTTTTGCAGGACTTTCTTTCTCATTGTTCTCACCACTATTCAACCTTGCAACAAACGATCAATGGCACACTCTAAAACAAGGCGTTCCCAAGCTGATTGTCTACACTGCGTTCTTCTACTTCTCACTATCTTGCTTTGTAATCGCGGTCGCTCTCAACATTAGTTTCCTGTACAAACCTGTGCTAGACTCACCAAGATCTTCCTTTAGAGAATACCTGAGTGACTGGAACGGAAGAGGTTGGGCACTTGCAGCTGGATTGTTATGTGGGTTTGGTAACGGTCTTCAGTTCATGGGTGGACAAGCTGCAGGATATGCAGCCTCAGATGCTGTTCAGGCACTTCCTTTAGTATCGACTTTTTGGGGGATATATCTGTTTGGGGAGTATAGGAGATCATCTACGCGAACATATGCTTTGCTTGTTGGAATGCTGGTGATGTTTACTGTTGCTGTGGGGCTTCTAATGGCCTCGGCTGGGGAAAGAGAGACGCGATTTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

377

Amino Acids

41.14

Weight (kDa)

5.26

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	49 - 404	8e-189	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	735
AccII	CGCG	3 cut(s)	779, 1036, 1123
AciI	CCGC	2 cut(s)	299, 779
AcuI	CTGAAG	2 cut(s)	498, 902
AfaI	GTAC	2 cut(s)	223, 806
AfiI	CCNNNNNNNGG	1 cut(s)	1107
AgsI	TTSAA	4 cut(s)	119, 266, 337, 676
AluBI	AGCT	7 cut(s)	11, 344, 383, 557, 727, 887, 938
AluI	AGCT	7 cut(s)	11, 344, 383, 557, 727, 887, 938
Alw26I	GTCTC	3 cut(s)	137, 484, 1112
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	3 cut(s)	95, 275, 1098
ApeKI	GCWGC	5 cut(s)	179, 554, 884, 938, 950
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	4 cut(s)	227, 657, 816, 1078
BaeGI	GKGCMC	2 cut(s)	305, 880
BanI	GGYRCC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	908
BbvI	GCAGC	5 cut(s)	166, 566, 896, 925, 962
BccI	CCATC	2 cut(s)	170, 523
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	3 cut(s)	137, 484, 1112
BfaI	CTAG	1 cut(s)	818
BfmI	CTRYAG	2 cut(s)	552, 939
BglII	AGATCT	1 cut(s)	830
BisI	GCNGC	5 cut(s)	180, 555, 885, 939, 951
BlsI	GCNGC	5 cut(s)	181, 556, 886, 940, 952
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	234
BmsI	GCATC	1 cut(s)	949
BpiI	GAAGAC	1 cut(s)	908
BsaJI	CCNNGG	1 cut(s)	1101
Bsc4I	CCNNNNNNNGG	1 cut(s)	1107
Bse1I	ACTGG	1 cut(s)	863
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	1101
BseLI	CCNNNNNNNGG	1 cut(s)	1107
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	272, 465, 842, 969
BseNI	ACTGG	1 cut(s)	863
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	2 cut(s)	305, 880
BseXI	GCAGC	5 cut(s)	166, 566, 896, 925, 962
BseYI	CCCAGC	1 cut(s)	1106
Bsh1236I	CGCG	3 cut(s)	779, 1036, 1123
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	3 cut(s)	97, 277, 1100
BshNI	GGYRCC	1 cut(s)	232
BsiEI	CGRYCG	1 cut(s)	783
BslI	CCNNNNNNNGG	1 cut(s)	1107
BsmAI	GTCTC	3 cut(s)	137, 484, 1112
BsmBI	CGTCTC	2 cut(s)	137, 1112
BsmI	GAATGC	1 cut(s)	1065
BsnI	GGCC	3 cut(s)	97, 277, 1100
Bsp1286I	GDGCHC	2 cut(s)	305, 880
Bsp1407I	TGTACA	1 cut(s)	804
Bsp143I	GATC	3 cut(s)	691, 830, 1025
BspACI	CCGC	2 cut(s)	299, 779
BspANI	GGCC	3 cut(s)	97, 277, 1100
BspCNI	CTCAG	4 cut(s)	271, 464, 843, 968
BspFNI	CGCG	3 cut(s)	779, 1036, 1123
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	2 cut(s)	556, 943
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	863
BssECI	CCNNGG	1 cut(s)	1101
BssMI	GATC	3 cut(s)	691, 830, 1025
Bst4CI	ACNGT	4 cut(s)	310, 469, 914, 1078
Bst6I	CTCTTC	4 cut(s)	117, 415, 474, 862
BstAPI	GCANNNNNTGC	1 cut(s)	947
BstAUI	TGTACA	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	99, 301
BstDEI	CTNAG	5 cut(s)	258, 451, 851, 955, 1131
BstFNI	CGCG	3 cut(s)	779, 1036, 1123
BstKTI	GATC	3 cut(s)	694, 833, 1028
BstMAI	GTCTC	3 cut(s)	137, 484, 1112
BstMBI	GATC	3 cut(s)	691, 830, 1025
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	6 cut(s)	76, 107, 884, 947, 959, 968
BstSFI	CTRYAG	2 cut(s)	552, 939
BstSLI	GKGCMC	2 cut(s)	305, 880
BstUI	CGCG	3 cut(s)	779, 1036, 1123
BstV1I	GCAGC	5 cut(s)	166, 566, 896, 925, 962
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	1 cut(s)	830
BstYI	RGATCY	1 cut(s)	830
BsuRI	GGCC	3 cut(s)	97, 277, 1100
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	2 cut(s)	99, 301
CaiI	CAGNNNCTG	1 cut(s)	962
Cfr13I	GGNCC	1 cut(s)	276
CseI	GACGC	1 cut(s)	1129
Csp6I	GTAC	2 cut(s)	222, 805
CviAII	CATG	4 cut(s)	227, 376, 610, 925
CviQI	GTAC	2 cut(s)	222, 805
DdeI	CTNAG	5 cut(s)	258, 451, 851, 955, 1131
DpnI	GATC	3 cut(s)	693, 832, 1027
DpnII	GATC	3 cut(s)	691, 830, 1025
Eam1104I	CTCTTC	4 cut(s)	117, 415, 474, 862
EarI	CTCTTC	4 cut(s)	117, 415, 474, 862
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	498, 902
EcoRV	GATATC	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	137, 1112
FaeI	CATG	4 cut(s)	230, 379, 613, 928
FatI	CATG	4 cut(s)	226, 375, 609, 924
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	1042
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	5 cut(s)	180, 555, 885, 939, 951
Fsp4HI	GCNGC	5 cut(s)	180, 555, 885, 939, 951
FspBI	CTAG	1 cut(s)	818
GluI	GCNGC	5 cut(s)	180, 555, 885, 939, 951
GsaI	CCCAGC	1 cut(s)	1110
HaeIII	GGCC	3 cut(s)	97, 277, 1100
HgaI	GACGC	1 cut(s)	1129
Hin1II	CATG	4 cut(s)	230, 379, 613, 928
HinfI	GANTC	2 cut(s)	262, 821
HphI	GGTGA	4 cut(s)	227, 657, 816, 1078
Hpy166II	GTNNAC	5 cut(s)	224, 406, 736, 932, 1074
Hpy188I	TCNGA	3 cut(s)	261, 443, 958
Hpy188III	TCNNGA	4 cut(s)	14, 116, 152, 266
Hpy8I	GTNNAC	5 cut(s)	224, 406, 736, 932, 1074
HpyAV	CCTTC	1 cut(s)	539
HpyCH4III	ACNGT	4 cut(s)	310, 469, 914, 1078
HpyCH4V	TGCA	8 cut(s)	182, 293, 554, 641, 683, 884, 941, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	76, 107, 884, 947, 959, 968
HpyF3I	CTNAG	5 cut(s)	258, 451, 851, 955, 1131
Hsp92II	CATG	4 cut(s)	230, 379, 613, 928
Kzo9I	GATC	3 cut(s)	691, 830, 1025
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	50
Lsp1109I	GCAGC	5 cut(s)	166, 566, 896, 925, 962
LweI	GCATC	1 cut(s)	949
MaeI	CTAG	1 cut(s)	818
MaeIII	GTNAC	3 cut(s)	469, 854, 908
MalI	GATC	3 cut(s)	693, 832, 1027
MboI	GATC	3 cut(s)	691, 830, 1025
MflI	RGATCY	1 cut(s)	830
MhlI	GDGCHC	2 cut(s)	305, 880
MluCI	AATT	4 cut(s)	17, 271, 313, 415
MlyI	GAGTC	1 cut(s)	815
MmeI	TCCRAC	1 cut(s)	1036
MnlI	CCTC	6 cut(s)	41, 223, 289, 863, 964, 1111
MspA1I	CMGCKG	1 cut(s)	887
Mva1269I	GAATGC	1 cut(s)	1065
MvnI	CGCG	3 cut(s)	779, 1036, 1123
MwoI	GCNNNNNNNGC	6 cut(s)	76, 107, 884, 947, 959, 968
NdeI	CATATG	1 cut(s)	1042
NdeII	GATC	3 cut(s)	691, 830, 1025
NlaIII	CATG	4 cut(s)	230, 379, 613, 928
NlaIV	GGNNCC	1 cut(s)	234
NmeAIII	GCCGAG	1 cut(s)	1082
NmuCI	GTSAC	2 cut(s)	469, 854
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PctI	GAATGC	1 cut(s)	1065
PfeI	GAWTC	1 cut(s)	262
PkrI	GCNGC	5 cut(s)	181, 556, 886, 940, 952
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
PspFI	CCCAGC	1 cut(s)	1106
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	276
PstI	CTGCAG	2 cut(s)	556, 943
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	1 cut(s)	830
PvuII	CAGCTG	1 cut(s)	887
RsaI	GTAC	2 cut(s)	223, 806
RsaNI	GTAC	2 cut(s)	222, 805
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	5 cut(s)	180, 555, 885, 939, 951
Sau3AI	GATC	3 cut(s)	691, 830, 1025
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	815
SduI	GDGCHC	2 cut(s)	305, 880
SfaNI	GCATC	1 cut(s)	949
SfcI	CTRYAG	2 cut(s)	552, 939
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	4 cut(s)	17, 271, 313, 415
SsiI	CCGC	2 cut(s)	299, 779
SspI	AATATT	1 cut(s)	57
SspMI	CTAG	1 cut(s)	818
TaaI	ACNGT	4 cut(s)	310, 469, 914, 1078
TaqI	TCGA	2 cut(s)	573, 986
TasI	AATT	4 cut(s)	17, 271, 313, 415
TatI	WGTACW	2 cut(s)	221, 804
TfiI	GAWTC	1 cut(s)	262
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	2 cut(s)	469, 854
TseI	GCWGC	5 cut(s)	179, 554, 884, 938, 950
Tsp45I	GTSAC	2 cut(s)	469, 854
TspDTI	ATGAA	3 cut(s)	232, 364, 913
TspGWI	ACGGA	2 cut(s)	345, 879
TspRI	CASTG	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.