Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Reverse (-)

52854246 .. 52856171

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG371400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTATGTGGTGGAAAGCAAAGGAGGTGCTATAGCATGCATGCTCATTGCCTTGTCCTTCCTAGGCACTTTGCCTGCTGTCCTGACTATGTTAGAAAGACGAGGCCGGCTTCCCCAGCATACTTATCTGGACTACTCCATTACCAATTTTTTGGTTGCTGTACTCATTGCCTTCACATTTGGTCAGATAGGCAGCGGCACACCTGAGATGCCTAATTTCTTAACTCAACTTTCACAGGATAATTTTCCGAGTGTTCTATTCGCAATGGCGGGAGGGATAGTCCTCAGCCTTGGAAATCTGGCCACACAGTATGCTTGGGCTTTAGTTGGTCTGTCAGTGACAGAAGTGATCACTTCAAGCATCACAGTTGTTATAGGCACAACATTGAATTACTTCTTAGATGACAGAATTAATAGAGCAGAAGTTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCATACATCCAATGCAGCTGATAACAAAGATATGGAAAATGGAAATGGTTCGGCTGAGAAGACGAAGGTTGGGACTGCAGAATTTCTTGTACAGCTAGAAAACAGAAGATCAATTAAGGTTTTTGGGAAGAAAACTTATATTGGACTGGTCATAACTTTCTTTGCCGGGTTTTGCTTCTCCCTCTTCGTACCAGCATTCAACGTGGCCACAAATGATCAATGGAACACTTTGAAGAAAGGAGTTCCTCATTTGGTTGTCTATACTGCATTCTTCTACTTCTCAGCATCTTGTTTCGTCATTGCTATCATTTTAAATATCATCTTCCTCTACCGCCCTATACTCGGCTTACCTAAAACAACATTCAAAGCTTATTTGAATGACTGGAATGGTAGGGGTTGGGCCCTTTTGGCCGGTGTCCTATGTGGTTTCGGCAACGGTCTCCAATTCATGGGAGGTCAAGCTGCAGGATATGCAGCAGCTGATTCTGTTCAGGCACTTCCGCTAGTGAGCACTTTTTGGGCAATACTTCTGTTTGGAGAGTACCGAAAATCATCACGAAGAACATATGTGTTGCTTATCAGCATGTTGTTTATGTTTATTGCAGCTGTTGCAATCCTTATGGCATCATCAGGGCATCGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

374

Amino Acids

40.66

Weight (kDa)

9.07

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 170	4.3e-73	Ureide permease
TMEM144	PF07857	87 - 366	4.7e-06	Transmembrane family, TMEM144 of transporters
Ureide_permease	PF07168	169 - 369	3.8e-111	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	928
AciI	CCGC	5 cut(s)	195, 269, 458, 811, 980
AcoI	YGGCCR	3 cut(s)	300, 684, 888
AcsI	RAATTY	1 cut(s)	560
AfaI	GTAC	4 cut(s)	162, 570, 669, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	821, 928
AgsI	TTSAA	6 cut(s)	357, 388, 679, 712, 844, 856
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	6 cut(s)	497, 574, 848, 941, 959, 1085
AluI	AGCT	6 cut(s)	497, 574, 848, 941, 959, 1085
Alw21I	GWGCWC	1 cut(s)	992
Alw26I	GTCTC	1 cut(s)	923
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	5 cut(s)	103, 300, 684, 879, 888
ApaI	GGGCCC	1 cut(s)	883
ApeKI	GCWGC	6 cut(s)	192, 494, 941, 953, 956, 1082
ApoI	RAATTY	1 cut(s)	560
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	2 cut(s)	392, 526
AspA2I	CCTAGG	1 cut(s)	61
AspS9I	GGNCC	2 cut(s)	879, 880
AsuC2I	CCSGG	1 cut(s)	646
AvrII	CCTAGG	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	883
BalI	TGGCCA	2 cut(s)	302, 686
BanII	GRGCYC	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	992
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	6 cut(s)	204, 506, 928, 965, 968, 1094
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	2 cut(s)	348, 694
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	923
BfaI	CTAG	3 cut(s)	62, 575, 983
BfmI	CTRYAG	3 cut(s)	30, 555, 942
BglI	GCCNNNNNGGC	1 cut(s)	887
BisI	GCNGC	7 cut(s)	193, 196, 495, 942, 954, 957, 1083
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	7 cut(s)	194, 197, 496, 943, 955, 958, 1084
Bme1390I	CCNGG	2 cut(s)	435, 646
BmgT120I	GGNCC	2 cut(s)	879, 880
BmiI	GGNNCC	1 cut(s)	881
BmrFI	CCNGG	2 cut(s)	435, 646
BmsI	GCATC	4 cut(s)	198, 369, 773, 1112
BpiI	GAAGAC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	284
BpuMI	CCSGG	1 cut(s)	646
BsaI	GGTCTC	1 cut(s)	923
BsaJI	CCNNGG	3 cut(s)	61, 289, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	821, 928
Bse118I	RCCGGY	2 cut(s)	105, 890
Bse1I	ACTGG	2 cut(s)	630, 866
Bse3DI	GCAATG	4 cut(s)	45, 165, 270, 777
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	61, 289, 433
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	2 cut(s)	821, 928
BseMI	GCAATG	4 cut(s)	45, 165, 270, 777
BseMII	CTCAG	4 cut(s)	195, 298, 525, 774
BseNI	ACTGG	2 cut(s)	630, 866
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	6 cut(s)	204, 506, 928, 965, 968, 1094
BseYI	CCCAGC	1 cut(s)	114
BshFI	GGCC	5 cut(s)	105, 302, 686, 881, 890
BsiHKAI	GWGCWC	1 cut(s)	992
BsiSI	CCGG	3 cut(s)	106, 645, 891
BslFI	GGGAC	1 cut(s)	565
BslI	CCNNNNNNNGG	2 cut(s)	821, 928
BsmAI	GTCTC	1 cut(s)	923
BsmFI	GGGAC	1 cut(s)	565
BsmI	GAATGC	2 cut(s)	674, 746
BsnI	GGCC	5 cut(s)	105, 302, 686, 881, 890
Bso31I	GGTCTC	1 cut(s)	923
Bsp120I	GGGCCC	1 cut(s)	879
Bsp1286I	GDGCHC	2 cut(s)	883, 992
Bsp1407I	TGTACA	1 cut(s)	568
Bsp143I	GATC	3 cut(s)	348, 587, 694
BspACI	CCGC	5 cut(s)	195, 269, 458, 811, 980
BspANI	GGCC	5 cut(s)	105, 302, 686, 881, 890
BspCNI	CTCAG	4 cut(s)	196, 297, 526, 773
BspLI	GGNNCC	1 cut(s)	881
BspMAI	CTGCAG	2 cut(s)	559, 946
BspTNI	GGTCTC	1 cut(s)	923
BsrDI	GCAATG	4 cut(s)	45, 165, 270, 777
BsrFI	RCCGGY	2 cut(s)	105, 890
BsrGI	TGTACA	1 cut(s)	568
BsrI	ACTGG	2 cut(s)	630, 866
BssAI	RCCGGY	2 cut(s)	105, 890
BssECI	CCNNGG	3 cut(s)	61, 289, 433
BssMI	GATC	3 cut(s)	348, 587, 694
BssT1I	CCWWGG	2 cut(s)	61, 289
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	309, 367, 917
Bst6I	CTCTTC	1 cut(s)	668
BstAPI	GCANNNNNTGC	2 cut(s)	950, 1088
BstAUI	TGTACA	1 cut(s)	568
BstC8I	GCNNGC	5 cut(s)	37, 41, 75, 107, 445
BstDEI	CTNAG	5 cut(s)	204, 284, 397, 534, 760
BstF5I	GGATG	1 cut(s)	485
BstKTI	GATC	3 cut(s)	351, 590, 697
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	3 cut(s)	348, 587, 694
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 887, 950, 1088
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	3 cut(s)	39, 43, 1066
BstSCI	CCNGG	2 cut(s)	433, 644
BstSFI	CTRYAG	3 cut(s)	30, 555, 942
BstSLI	GKGCMC	1 cut(s)	883
BstV1I	GCAGC	6 cut(s)	204, 506, 928, 965, 968, 1094
BstV2I	GAAGAC	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	5 cut(s)	105, 302, 686, 881, 890
BtsCI	GGATG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	5 cut(s)	37, 41, 75, 107, 445
CaiI	CAGNNNCTG	1 cut(s)	959
Cfr10I	RCCGGY	2 cut(s)	105, 890
Cfr13I	GGNCC	2 cut(s)	879, 880
Csp6I	GTAC	4 cut(s)	161, 569, 668, 1021
CviAII	CATG	4 cut(s)	36, 40, 928, 1063
CviQI	GTAC	4 cut(s)	161, 569, 668, 1021
DdeI	CTNAG	5 cut(s)	204, 284, 397, 534, 760
DpnI	GATC	3 cut(s)	350, 589, 696
DpnII	GATC	3 cut(s)	348, 587, 694
DraI	TTTAAA	1 cut(s)	792
EaeI	YGGCCR	3 cut(s)	300, 684, 888
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
Eco130I	CCWWGG	2 cut(s)	61, 289
Eco24I	GRGCYC	1 cut(s)	883
Eco31I	GGTCTC	1 cut(s)	923
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	61, 289
EcoT22I	ATGCAT	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	883
ErhI	CCWWGG	2 cut(s)	61, 289
FaeI	CATG	4 cut(s)	39, 43, 931, 1066
FaqI	GGGAC	1 cut(s)	565
FatI	CATG	4 cut(s)	35, 39, 927, 1062
FauI	CCCGC	1 cut(s)	262
FauNDI	CATATG	1 cut(s)	1045
FbaI	TGATCA	2 cut(s)	348, 694
Fnu4HI	GCNGC	7 cut(s)	193, 196, 495, 942, 954, 957, 1083
FokI	GGATG	1 cut(s)	472
FriOI	GRGCYC	1 cut(s)	883
Fsp4HI	GCNGC	7 cut(s)	193, 196, 495, 942, 954, 957, 1083
FspBI	CTAG	3 cut(s)	62, 575, 983
GluI	GCNGC	7 cut(s)	193, 196, 495, 942, 954, 957, 1083
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	5 cut(s)	105, 302, 686, 881, 890
HapII	CCGG	3 cut(s)	106, 645, 891
Hin1II	CATG	4 cut(s)	39, 43, 931, 1066
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	1 cut(s)	962
HpaII	CCGG	3 cut(s)	106, 645, 891
Hpy188I	TCNGA	2 cut(s)	186, 249
Hpy188III	TCNNGA	4 cut(s)	82, 128, 451, 1035
HpyAV	CCTTC	3 cut(s)	67, 181, 538
HpyCH4III	ACNGT	3 cut(s)	309, 367, 917
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	8 cut(s)	39, 494, 557, 746, 944, 953, 1082, 1091
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 887, 950, 1088
HpyF3I	CTNAG	5 cut(s)	204, 284, 397, 534, 760
HpySE526I	ACGT	1 cut(s)	681
Hsp92II	CATG	4 cut(s)	39, 43, 931, 1066
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	348, 694
Kzo9I	GATC	3 cut(s)	348, 587, 694
Lsp1109I	GCAGC	6 cut(s)	204, 506, 928, 965, 968, 1094
LweI	GCATC	4 cut(s)	198, 369, 773, 1112
MaeI	CTAG	3 cut(s)	62, 575, 983
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	3 cut(s)	350, 589, 696
MboI	GATC	3 cut(s)	348, 587, 694
MboII	GAAGA	8 cut(s)	550, 597, 619, 655, 724, 742, 793, 1050
MhlI	GDGCHC	2 cut(s)	883, 992
MlsI	TGGCCA	2 cut(s)	302, 686
MluCI	AATT	8 cut(s)	145, 214, 241, 388, 408, 560, 591, 923
MluNI	TGGCCA	2 cut(s)	302, 686
MnlI	CCTC	8 cut(s)	17, 95, 266, 293, 671, 735, 815, 926
Mox20I	TGGCCA	2 cut(s)	302, 686
Mph1103I	ATGCAT	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	392, 526
MscI	TGGCCA	2 cut(s)	302, 686
MseI	TTAA	4 cut(s)	221, 411, 594, 791
Msp20I	TGGCCA	2 cut(s)	302, 686
MspA1I	CMGCKG	4 cut(s)	195, 497, 959, 1085
MspI	CCGG	3 cut(s)	106, 645, 891
MspR9I	CCNGG	2 cut(s)	435, 646
Mva1269I	GAATGC	2 cut(s)	674, 746
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	115, 887, 950, 1088
NaeI	GCCGGC	1 cut(s)	107
NciI	CCSGG	1 cut(s)	646
NdeI	CATATG	1 cut(s)	1045
NdeII	GATC	3 cut(s)	348, 587, 694
NgoMIV	GCCGGC	1 cut(s)	105
NlaIII	CATG	4 cut(s)	39, 43, 931, 1066
NlaIV	GGNNCC	1 cut(s)	881
NmeAIII	GCCGAG	1 cut(s)	801
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	3 cut(s)	39, 43, 1066
PaeI	GCATGC	2 cut(s)	39, 43
PctI	GAATGC	2 cut(s)	674, 746
PdiI	GCCGGC	1 cut(s)	107
PdmI	GAANNNNTTC	2 cut(s)	392, 526
PfeI	GAWTC	1 cut(s)	962
PflMI	CCANNNNNTGG	1 cut(s)	928
PkrI	GCNGC	7 cut(s)	194, 197, 496, 943, 955, 958, 1084
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	881
PspOMI	GGGCCC	1 cut(s)	879
PspPI	GGNCC	2 cut(s)	879, 880
PstI	CTGCAG	2 cut(s)	559, 946
PstNI	CAGNNNCTG	1 cut(s)	959
PvuII	CAGCTG	3 cut(s)	497, 959, 1085
RsaI	GTAC	4 cut(s)	162, 570, 669, 1022
RsaNI	GTAC	4 cut(s)	161, 569, 668, 1021
SaqAI	TTAA	4 cut(s)	221, 411, 594, 791
SatI	GCNGC	7 cut(s)	193, 196, 495, 942, 954, 957, 1083
Sau3AI	GATC	3 cut(s)	348, 587, 694
Sau96I	GGNCC	2 cut(s)	879, 880
ScrFI	CCNGG	2 cut(s)	435, 646
SduI	GDGCHC	2 cut(s)	883, 992
SfaNI	GCATC	4 cut(s)	198, 369, 773, 1112
SfcI	CTRYAG	3 cut(s)	30, 555, 942
SfiI	GGCCNNNNNGGCC	1 cut(s)	887
SphI	GCATGC	2 cut(s)	39, 43
Sse9I	AATT	8 cut(s)	145, 214, 241, 388, 408, 560, 591, 923
SsiI	CCGC	5 cut(s)	195, 269, 458, 811, 980
SspMI	CTAG	3 cut(s)	62, 575, 983
StyD4I	CCNGG	2 cut(s)	433, 644
StyI	CCWWGG	2 cut(s)	61, 289
TaaI	ACNGT	3 cut(s)	309, 367, 917
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	1 cut(s)	1117
TasI	AATT	8 cut(s)	145, 214, 241, 388, 408, 560, 591, 923
TatI	WGTACW	2 cut(s)	160, 568
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	962
Tru1I	TTAA	4 cut(s)	221, 411, 594, 791
Tru9I	TTAA	4 cut(s)	221, 411, 594, 791
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	6 cut(s)	192, 494, 941, 953, 956, 1082
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	470, 916
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	928
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	560
XceI	RCATGY	3 cut(s)	39, 43, 1066
XmaJI	CCTAGG	1 cut(s)	61
XmnI	GAANNNNTTC	2 cut(s)	392, 526
XspI	CTAG	3 cut(s)	62, 575, 983
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.