Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Reverse (-)

61136568 .. 61138639

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGTATGTGGTGGATAGCAAAGGAGGTGCTATAGCATGCATGCTGCTGGCACTGTTCTTATTGGGGACATGGCCTGCTGTCCTGACTATGCTCGAAAGAAGAGGCCGGCTTCCTCAGCATACTTATTTGGATTACTCTATCACCAATTTGTTGGTTGCTGTTCTGATTGCTTTGACATTTGGTCAGATAGGCAGTAGCACACCTGACAAGCCCAATTTTATAACTCAACTTTCACAGGTCAGATTCAACTTTGAACTTCCTAATGATTTTTCAAACTTCAAAATAGGGATGATCCTATGGAGAAACTTCAGTCATGATAATTTGCCTAGTGTTTTATTCGCAATGGCGGGTGGGATAGTCCTGAGCCTTGGAAATCTTTCTTCACAGTATGCATTTGCTTTAGTTGGTTTGTCACTGACAGAGGTGATCACTGCAAGCATCACAACTGTCATAGGTCTCTTCTCTCCTTCCATCAGTGTGGCGCTGCACGACCATGTAGTATATTTTTATGTTCCTTGGATCGGCATTTTGCAAATACTGAACGTACTGTTTACTTTTTTCGTTTTGAATGTAACAGGCACAACCTTGAATTACTTCTTAGACAACAGAATTAATAAAGCCGAGATTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCACTCGTCCAATGCAGCTGATAACAAAGTAAAACTTGACAGTTTTCCCAGTGATTCAAAAGATGGAGAAAAGGCTCTAAAACAAATTCCAGATAAGGATGGGTTAAAGGATTTGGAGAGTGGAAATGAGAAAGCGAAGGCTGGCACTGCAGACTATCTTGTACAGATTGAGAACCAAAGAGCAATTAAGGTTTTTGGGAAGAAGACTTACATTGGACTGGCCATAACTTTCTTTGCGGGACTTTGCTTCTCCCTCTTCACACCAGCATTCAACGTGGCCACAAATGATCAGTGGCATACTTTGAAGACAGGAGTTCCTCATTTGGTTGTCTATACTGCATTTTTCTACTTCTCAGTATCTTGTTTCGTCATTGCTATCATTTTAAACACCATCTTCCTTTACCGCCCCATACTAGACTTACCCAAAAGTTCATTCAAAGCTTACTTGAACGACTGGGAGGGTAGGGGTTGGGCCCTTTTGGCTGGCCTCATATGTGGATTCGGCAACGGTCTCCAATTCATGGGAGGTCAAGCTGCAGGATATGCTGCAGCTGATTCTGTTCAGGCACTTCCACTTGTGAGCACTTTCTGGGGCATACTTCTGTTTGGAGAATACCGAAAATCGTCAAGAAGGACATATATATTGCTTACTGGCATGTTGACTATGTTTATTGTTGCTGTTGCTGTCCTCATGGCATCATCGGGGCATCGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

465

Amino Acids

50.98

Weight (kDa)

8.74

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 80	2.5e-14	Ureide permease
Ureide_permease	PF07168	102 - 152	2.4e-19	Ureide permease
Ureide_permease	PF07168	179 - 460	1.6e-144	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	1201
AciI	CCGC	4 cut(s)	347, 659, 917, 1084
AclWI	GGATC	2 cut(s)	286, 527
AcoI	YGGCCR	2 cut(s)	900, 957
AcsI	RAATTY	1 cut(s)	765
AcuI	CTGAAG	1 cut(s)	292
AfaI	GTAC	2 cut(s)	546, 843
AfiI	CCNNNNNNNGG	2 cut(s)	521, 1201
AhdI	GACNNNNNGTC	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	1097, 1129
AluBI	AGCT	4 cut(s)	698, 1121, 1214, 1232
AluI	AGCT	4 cut(s)	698, 1121, 1214, 1232
Alw21I	GWGCWC	1 cut(s)	1265
Alw26I	GTCTC	2 cut(s)	461, 1196
AlwI	GGATC	2 cut(s)	286, 527
AoxI	GGCC	6 cut(s)	71, 103, 900, 957, 1152, 1165
ApaI	GGGCCC	1 cut(s)	1156
ApeKI	GCWGC	6 cut(s)	43, 484, 695, 1214, 1226, 1229
ApoI	RAATTY	1 cut(s)	765
AseI	ATTAAT	1 cut(s)	612
Asp700I	GAANNNNTTC	2 cut(s)	376, 593
AspLEI	GCGC	1 cut(s)	484
AspS9I	GGNCC	2 cut(s)	1152, 1153
AsuHPI	GGTGA	2 cut(s)	133, 436
BaeGI	GKGCMC	1 cut(s)	1156
BalI	TGGCCA	2 cut(s)	902, 959
BanII	GRGCYC	1 cut(s)	1156
BarI	GAAGNNNNNNTAC	2 cut(s)	872, 904
BbsI	GAAGAC	2 cut(s)	890, 992
Bbv12I	GWGCWC	1 cut(s)	1265
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	6 cut(s)	30, 471, 707, 1201, 1213, 1241
BccI	CCATC	4 cut(s)	479, 737, 773, 1079
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	2 cut(s)	426, 967
BcoDI	GTCTC	2 cut(s)	461, 1196
BfaI	CTAG	2 cut(s)	327, 1094
BfmI	CTRYAG	4 cut(s)	30, 828, 1215, 1227
BfoI	RGCGCY	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	1160
BisI	GCNGC	6 cut(s)	44, 485, 696, 1215, 1227, 1230
BlsI	GCNGC	6 cut(s)	45, 486, 697, 1216, 1228, 1231
Bme1390I	CCNGG	1 cut(s)	636
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	1152, 1153
BmiI	GGNNCC	1 cut(s)	1154
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	2 cut(s)	723, 1144
BmsI	GCATC	2 cut(s)	447, 1385
BmuI	ACTGGG	2 cut(s)	723, 1144
BpiI	GAAGAC	2 cut(s)	890, 992
Bpu10I	CCTNAGC	2 cut(s)	114, 362
BsaI	GGTCTC	2 cut(s)	461, 1196
BsaJI	CCNNGG	3 cut(s)	367, 515, 634
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 1201
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	4 cut(s)	729, 903, 1139, 1336
Bse3DI	GCAATG	2 cut(s)	348, 1050
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	3 cut(s)	367, 515, 634
BseGI	GGATG	2 cut(s)	294, 784
BseLI	CCNNNNNNNGG	2 cut(s)	521, 1201
BseMI	GCAATG	2 cut(s)	348, 1050
BseMII	CTCAG	3 cut(s)	128, 353, 1047
BseNI	ACTGG	4 cut(s)	729, 903, 1139, 1336
BseSI	GKGCMC	1 cut(s)	1156
BseXI	GCAGC	6 cut(s)	30, 471, 707, 1201, 1213, 1241
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	6 cut(s)	73, 105, 902, 959, 1154, 1167
BsiHKAI	GWGCWC	1 cut(s)	1265
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	79, 933
BslI	CCNNNNNNNGG	2 cut(s)	521, 1201
BsmAI	GTCTC	2 cut(s)	461, 1196
BsmFI	GGGAC	2 cut(s)	79, 933
BsmI	GAATGC	1 cut(s)	947
BsnI	GGCC	6 cut(s)	73, 105, 902, 959, 1154, 1167
Bso31I	GGTCTC	2 cut(s)	461, 1196
Bsp120I	GGGCCC	1 cut(s)	1152
Bsp1286I	GDGCHC	2 cut(s)	1156, 1265
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	291, 426, 519, 967
BspACI	CCGC	4 cut(s)	347, 659, 917, 1084
BspANI	GGCC	6 cut(s)	73, 105, 902, 959, 1154, 1167
BspCNI	CTCAG	3 cut(s)	127, 354, 1046
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	1154
BspMAI	CTGCAG	3 cut(s)	832, 1219, 1231
BspPI	GGATC	2 cut(s)	286, 527
BspTNI	GGTCTC	2 cut(s)	461, 1196
BsrDI	GCAATG	2 cut(s)	348, 1050
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	4 cut(s)	729, 903, 1139, 1336
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	367, 515, 634
BssMI	GATC	4 cut(s)	291, 426, 519, 967
BssT1I	CCWWGG	2 cut(s)	367, 515
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	6 cut(s)	54, 387, 448, 549, 722, 1190
Bst6I	CTCTTC	3 cut(s)	94, 464, 941
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstAUI	TGTACA	1 cut(s)	841
BstC8I	GCNNGC	9 cut(s)	37, 41, 48, 75, 107, 436, 646, 823, 1165
BstDEI	CTNAG	4 cut(s)	114, 362, 598, 1033
BstF5I	GGATG	2 cut(s)	294, 784
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	1 cut(s)	484
BstKTI	GATC	4 cut(s)	294, 429, 522, 970
BstMAI	GTCTC	2 cut(s)	461, 1196
BstMBI	GATC	4 cut(s)	291, 426, 519, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 827, 1160, 1223
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	3 cut(s)	39, 43, 1339
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	4 cut(s)	30, 828, 1215, 1227
BstSLI	GKGCMC	1 cut(s)	1156
BstV1I	GCAGC	6 cut(s)	30, 471, 707, 1201, 1213, 1241
BstV2I	GAAGAC	2 cut(s)	890, 992
BstXI	CCANNNNNNTGG	2 cut(s)	151, 478
BsuRI	GGCC	6 cut(s)	73, 105, 902, 959, 1154, 1167
BtsCI	GGATG	2 cut(s)	294, 784
BtsI	GCAGTG	2 cut(s)	429, 825
BtsIMutI	CAGTG	7 cut(s)	50, 413, 429, 481, 736, 825, 977
Cac8I	GCNNGC	9 cut(s)	37, 41, 48, 75, 107, 436, 646, 823, 1165
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	484
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	1152, 1153
Csp6I	GTAC	2 cut(s)	545, 842
CviAII	CATG	8 cut(s)	36, 40, 69, 314, 494, 1201, 1336, 1372
CviQI	GTAC	2 cut(s)	545, 842
DdeI	CTNAG	4 cut(s)	114, 362, 598, 1033
DpnI	GATC	4 cut(s)	293, 428, 521, 969
DpnII	GATC	4 cut(s)	291, 426, 519, 967
DraI	TTTAAA	1 cut(s)	1065
DriI	GACNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	900, 957
Eam1104I	CTCTTC	3 cut(s)	94, 464, 941
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	3 cut(s)	94, 464, 941
Eco130I	CCWWGG	2 cut(s)	367, 515
Eco24I	GRGCYC	1 cut(s)	1156
Eco31I	GGTCTC	2 cut(s)	461, 1196
Eco57I	CTGAAG	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	1153
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	367, 515
EcoT22I	ATGCAT	2 cut(s)	41, 394
EcoT38I	GRGCYC	1 cut(s)	1156
ErhI	CCWWGG	2 cut(s)	367, 515
FaeI	CATG	8 cut(s)	39, 43, 72, 317, 497, 1204, 1339, 1375
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FaqI	GGGAC	2 cut(s)	79, 933
FatI	CATG	8 cut(s)	35, 39, 68, 313, 493, 1200, 1335, 1371
FauI	CCCGC	2 cut(s)	340, 910
FauNDI	CATATG	1 cut(s)	1172
FbaI	TGATCA	2 cut(s)	426, 967
Fnu4HI	GCNGC	6 cut(s)	44, 485, 696, 1215, 1227, 1230
FokI	GGATG	2 cut(s)	301, 791
FriOI	GRGCYC	1 cut(s)	1156
Fsp4HI	GCNGC	6 cut(s)	44, 485, 696, 1215, 1227, 1230
FspBI	CTAG	2 cut(s)	327, 1094
GlaI	GCGC	1 cut(s)	483
GluI	GCNGC	6 cut(s)	44, 485, 696, 1215, 1227, 1230
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	6 cut(s)	73, 105, 902, 959, 1154, 1167
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	1 cut(s)	484
Hin1II	CATG	8 cut(s)	39, 43, 72, 317, 497, 1204, 1339, 1375
Hin6I	GCGC	1 cut(s)	482
HinP1I	GCGC	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	1341
HindII	GTYRAC	1 cut(s)	1341
HindIII	AAGCTT	1 cut(s)	1119
HinfI	GANTC	5 cut(s)	243, 625, 734, 1179, 1235
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	133, 436
Hpy166II	GTNNAC	3 cut(s)	552, 682, 1341
Hpy188I	TCNGA	3 cut(s)	165, 186, 242
Hpy188III	TCNNGA	6 cut(s)	82, 314, 361, 652, 770, 1308
Hpy8I	GTNNAC	3 cut(s)	552, 682, 1341
HpyAV	CCTTC	3 cut(s)	477, 811, 1305
HpyCH4III	ACNGT	6 cut(s)	54, 387, 448, 549, 722, 1190
HpyCH4IV	ACGT	2 cut(s)	543, 954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 827, 1160, 1223
HpyF3I	CTNAG	4 cut(s)	114, 362, 598, 1033
HpySE526I	ACGT	2 cut(s)	543, 954
Hsp92II	CATG	8 cut(s)	39, 43, 72, 317, 497, 1204, 1339, 1375
HspAI	GCGC	1 cut(s)	482
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	426, 967
Kzo9I	GATC	4 cut(s)	291, 426, 519, 967
Lsp1109I	GCAGC	6 cut(s)	30, 471, 707, 1201, 1213, 1241
LweI	GCATC	2 cut(s)	447, 1385
MaeI	CTAG	2 cut(s)	327, 1094
MaeII	ACGT	2 cut(s)	543, 954
MaeIII	GTNAC	2 cut(s)	411, 571
MalI	GATC	4 cut(s)	293, 428, 521, 969
MboI	GATC	4 cut(s)	291, 426, 519, 967
MboII	GAAGA	8 cut(s)	111, 372, 451, 892, 895, 928, 997, 1066
MhlI	GDGCHC	2 cut(s)	1156, 1265
MlsI	TGGCCA	2 cut(s)	902, 959
MluCI	AATT	8 cut(s)	145, 214, 319, 589, 609, 765, 864, 1196
MluNI	TGGCCA	2 cut(s)	902, 959
Mox20I	TGGCCA	2 cut(s)	902, 959
Mph1103I	ATGCAT	2 cut(s)	41, 394
MroNI	GCCGGC	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	376, 593
MscI	TGGCCA	2 cut(s)	902, 959
MseI	TTAA	4 cut(s)	612, 785, 867, 1064
MslI	CAYNNNNRTG	2 cut(s)	476, 492
Msp20I	TGGCCA	2 cut(s)	902, 959
MspA1I	CMGCKG	2 cut(s)	698, 1232
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	947
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	4 cut(s)	115, 827, 1160, 1223
NaeI	GCCGGC	1 cut(s)	107
NdeI	CATATG	1 cut(s)	1172
NdeII	GATC	4 cut(s)	291, 426, 519, 967
NgoMIV	GCCGGC	1 cut(s)	105
NlaIII	CATG	8 cut(s)	39, 43, 72, 317, 497, 1204, 1339, 1375
NlaIV	GGNNCC	1 cut(s)	1154
NmeAIII	GCCGAG	1 cut(s)	646
NmuCI	GTSAC	1 cut(s)	411
NsiI	ATGCAT	2 cut(s)	41, 394
NspI	RCATGY	3 cut(s)	39, 43, 1339
PaeI	GCATGC	2 cut(s)	39, 43
PagI	TCATGA	1 cut(s)	313
PctI	GAATGC	1 cut(s)	947
PdiI	GCCGGC	1 cut(s)	107
PdmI	GAANNNNTTC	2 cut(s)	376, 593
PfeI	GAWTC	5 cut(s)	243, 625, 734, 1179, 1235
PflMI	CCANNNNNTGG	1 cut(s)	1201
PkrI	GCNGC	6 cut(s)	45, 486, 697, 1216, 1228, 1231
PshBI	ATTAAT	1 cut(s)	612
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	1 cut(s)	1154
PspOMI	GGGCCC	1 cut(s)	1152
PspPI	GGNCC	2 cut(s)	1152, 1153
PstI	CTGCAG	3 cut(s)	832, 1219, 1231
PvuII	CAGCTG	2 cut(s)	698, 1232
RsaI	GTAC	2 cut(s)	546, 843
RsaNI	GTAC	2 cut(s)	545, 842
RseI	CAYNNNNRTG	2 cut(s)	476, 492
SaqAI	TTAA	4 cut(s)	612, 785, 867, 1064
SatI	GCNGC	6 cut(s)	44, 485, 696, 1215, 1227, 1230
Sau3AI	GATC	4 cut(s)	291, 426, 519, 967
Sau96I	GGNCC	2 cut(s)	1152, 1153
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	1156, 1265
SfaNI	GCATC	2 cut(s)	447, 1385
SfcI	CTRYAG	4 cut(s)	30, 828, 1215, 1227
SmiMI	CAYNNNNRTG	2 cut(s)	476, 492
SphI	GCATGC	2 cut(s)	39, 43
Sse9I	AATT	8 cut(s)	145, 214, 319, 589, 609, 765, 864, 1196
SsiI	CCGC	4 cut(s)	347, 659, 917, 1084
SspMI	CTAG	2 cut(s)	327, 1094
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	2 cut(s)	367, 515
TaaI	ACNGT	6 cut(s)	54, 387, 448, 549, 722, 1190
TaiI	ACGT	2 cut(s)	546, 957
TaqI	TCGA	2 cut(s)	93, 1390
TasI	AATT	8 cut(s)	145, 214, 319, 589, 609, 765, 864, 1196
TatI	WGTACW	1 cut(s)	841
TfiI	GAWTC	5 cut(s)	243, 625, 734, 1179, 1235
Tru1I	TTAA	4 cut(s)	612, 785, 867, 1064
Tru9I	TTAA	4 cut(s)	612, 785, 867, 1064
TscAI	CASTG	7 cut(s)	57, 420, 436, 481, 736, 832, 977
TseFI	GTSAC	1 cut(s)	411
TseI	GCWGC	6 cut(s)	43, 484, 695, 1214, 1226, 1229
Tsp45I	GTSAC	1 cut(s)	411
TspDTI	ATGAA	2 cut(s)	1101, 1189
TspRI	CASTG	7 cut(s)	57, 420, 436, 481, 736, 832, 977
Van91I	CCANNNNNTGG	1 cut(s)	1201
VspI	ATTAAT	1 cut(s)	612
XapI	RAATTY	1 cut(s)	765
XceI	RCATGY	3 cut(s)	39, 43, 1339
XmnI	GAANNNNTTC	2 cut(s)	376, 593
XspI	CTAG	2 cut(s)	327, 1094
Zsp2I	ATGCAT	2 cut(s)	41, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.