Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Forward (+)

1071453 .. 1074016

Gene Structure 2564 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTATCTAGTGGAGAGCAAAGGAGGTGCCATAGCTTGTATGCTTTTAGCCTTACTATCTCTAGGGACTTGGCCAGCAGTTTTAACACTTTTAGAGAGACGTGGCCGTCTTCCTCAACACACCTATCTTGATTACTCCATCACTAACTTGTTGGCTGCTATTATTATAGCTTTCACTTTTGGTCAAATTGGGTCTACAAAACCCGATAGCCCAAACTTCATCACTCAGCTTGCTCAAGATAATTGGCCGTCTGTTATGTTTGCAATGGCGGGCGGTATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCACTGTAGTCATAGGCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCCTTTTCCCCGGTGTGGCCTGTTTCTTGATCGCGGTTTGTCTTGGTTCAGCAGTTCATAGATCCAATGCAGACGATAACAAGGCCAAGCTAAGAGACTTTGAAACGGCTAAGCAAGAAGCTTCAGGTCCATCTACCGAAATAGGAACAAACTCATCAAAAGACCTGGAGACTAATGTTACGACAAAACCTAAAGAAGGGACAGCAAGATTTCTTATAGAGCTTGAGAACACAAGAGCCATAAAGGTGTTCGGAAAACGAAAGATAATCGGACTAGCGATTACTTTCTTCGCAGGTCTTTGTTTCTCCCTCTTCTCTCCAGCATTTAACTTAGCCACTAACGATCAATGGAACAGATTGAAACAAGGAGTGCCAAAGCTAGTCGTTTACACAGCATTCTTCTACTTCTCTGTTTCTTGTTTTATCATTGCATTGATACTCAACGTTGTATTCCTCTACTATCCTGTTCTTGGTCTTCCAAAATCTTCTTTTAAAGCTTACTTAAATGACTGGAATGGTCGTTACTGGGCCTTTTTGGCGGGGTTTCTTTGCGGTTTTGGAAACGGTCTTCAGTTTATGGGCGGTCAAGCCGCAGGATACGCGGCTGCTGACTCCGTTCAGGCTCTTCCACTTGTGAGTACATTTTGGGGAGTGGTTTTGTTTGGAGAATACAGAAGATCGTCACGGAAAACTTATCTACTTCTCTTCTGTATGTTGTTTATGTTCATTTCAGCTGTTGCAGTTCTCATGGCTTCTTCTGGACATAGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

398

Amino Acids

43.54

Weight (kDa)

9.13

Isoelectric Point (pI)

34.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 393	7.1e-196	Ureide permease
TMEM144	PF07857	86 - 390	3.5e-07	Transmembrane family, TMEM144 of transporters

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	707
AccB1I	GGYRCC	1 cut(s)	26
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	2 cut(s)	458, 1025
AciI	CCGC	8 cut(s)	269, 273, 458, 962, 975, 1005, 1014, 1025
AclI	AACGTT	1 cut(s)	867
AclWI	GGATC	2 cut(s)	418, 480
AcoI	YGGCCR	3 cut(s)	71, 103, 245
AcuI	CTGAAG	2 cut(s)	531, 977
AfaI	GTAC	1 cut(s)	1063
AfiI	CCNNNNNNNGG	3 cut(s)	439, 620, 893
AgsI	TTSAA	3 cut(s)	388, 527, 784
AjiI	CACGTC	1 cut(s)	101
AjnI	CCWGG	1 cut(s)	588
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	9 cut(s)	35, 170, 229, 514, 545, 646, 802, 920, 1157
AluI	AGCT	9 cut(s)	35, 170, 229, 514, 545, 646, 802, 920, 1157
Alw26I	GTCTC	3 cut(s)	91, 513, 587
AlwI	GGATC	2 cut(s)	418, 480
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	6 cut(s)	71, 103, 245, 441, 507, 951
ApeKI	GCWGC	2 cut(s)	155, 1028
Asp700I	GAANNNNTTC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	551, 951
AsuC2I	CCSGG	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	551
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	26
BbsI	GAAGAC	3 cut(s)	101, 890, 983
BbvI	GCAGC	2 cut(s)	142, 1015
BccI	CCATC	2 cut(s)	146, 562
BceAI	ACGGC	3 cut(s)	90, 232, 546
BciT130I	CCWGG	1 cut(s)	590
BciVI	GTATCC	1 cut(s)	1013
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	3 cut(s)	91, 513, 587
BfaI	CTAG	4 cut(s)	8, 62, 698, 803
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	707
BfuI	GTATCC	1 cut(s)	1013
BglI	GCCNNNNNGGC	1 cut(s)	959
BisI	GCNGC	4 cut(s)	156, 1014, 1026, 1029
BlpI	GCTNAGC	2 cut(s)	284, 534
BlsI	GCNGC	4 cut(s)	157, 1015, 1027, 1030
Bme1390I	CCNGG	2 cut(s)	435, 590
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	290
BmgBI	CACGTC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	551, 951
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	435, 590
BmrI	ACTGGG	1 cut(s)	958
BmsI	GCATC	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	958
BpiI	GAAGAC	3 cut(s)	101, 890, 983
BpmI	CTGGAG	2 cut(s)	611, 726
Bpu1102I	GCTNAGC	2 cut(s)	284, 534
BpuEI	CTTGAG	2 cut(s)	219, 668
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	289, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 620, 893
Bse1I	ACTGG	2 cut(s)	938, 953
Bse3DI	GCAATG	2 cut(s)	270, 849
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	289, 433
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	3 cut(s)	439, 620, 893
BseMI	GCAATG	2 cut(s)	270, 849
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	938, 953
BseXI	GCAGC	2 cut(s)	142, 1015
Bsh1236I	CGCG	2 cut(s)	458, 1025
BshFI	GGCC	6 cut(s)	73, 105, 247, 443, 509, 953
BshNI	GGYRCC	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	435
BslFI	GGGAC	2 cut(s)	79, 637
BslI	CCNNNNNNNGG	3 cut(s)	439, 620, 893
BsmAI	GTCTC	3 cut(s)	91, 513, 587
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	2 cut(s)	79, 637
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	6 cut(s)	73, 105, 247, 443, 509, 953
BsoBI	CYCGRG	1 cut(s)	290
Bsp143I	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
Bsp1720I	GCTNAGC	2 cut(s)	284, 534
BspACI	CCGC	8 cut(s)	269, 273, 458, 962, 975, 1005, 1014, 1025
BspANI	GGCC	6 cut(s)	73, 105, 247, 443, 509, 953
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	2 cut(s)	458, 1025
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	2 cut(s)	418, 480
BspQI	GCTCTTC	1 cut(s)	1053
BspT107I	GGYRCC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	270, 849
BsrI	ACTGG	2 cut(s)	938, 953
BssECI	CCNNGG	2 cut(s)	289, 433
BssMI	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
Bst2UI	CCWGG	1 cut(s)	590
Bst4CI	ACNGT	2 cut(s)	367, 989
Bst6I	CTCTTC	3 cut(s)	740, 1053, 1133
BstC8I	GCNNGC	3 cut(s)	75, 231, 271
BstDEI	CTNAG	5 cut(s)	225, 284, 515, 534, 754
BstENI	CCTNNNNNAGG	1 cut(s)	618
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	2 cut(s)	458, 1025
BstKTI	GATC	6 cut(s)	411, 426, 456, 488, 769, 1103
BstMAI	GTCTC	3 cut(s)	91, 513, 587
BstMBI	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
BstMWI	GCNNNNNNNGC	2 cut(s)	959, 1022
BstNI	CCWGG	1 cut(s)	590
BstSCI	CCNGG	2 cut(s)	433, 588
BstSFI	CTRYAG	1 cut(s)	366
BstUI	CGCG	2 cut(s)	458, 1025
BstV1I	GCAGC	2 cut(s)	142, 1015
BstV2I	GAAGAC	3 cut(s)	101, 890, 983
BstX2I	RGATCY	2 cut(s)	423, 485
BstYI	RGATCY	2 cut(s)	423, 485
BsuI	GTATCC	1 cut(s)	1013
BsuRI	GGCC	6 cut(s)	73, 105, 247, 443, 509, 953
BtrI	CACGTC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	363
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	3 cut(s)	75, 231, 271
Cfr13I	GGNCC	2 cut(s)	551, 951
Csp6I	GTAC	1 cut(s)	1062
CviAII	CATG	2 cut(s)	315, 1171
CviQI	GTAC	1 cut(s)	1062
DdeI	CTNAG	5 cut(s)	225, 284, 515, 534, 754
DpnI	GATC	6 cut(s)	410, 425, 455, 487, 768, 1102
DpnII	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
DraI	TTTAAA	1 cut(s)	916
DrdI	GACNNNNNNGTC	1 cut(s)	105
DseDI	GACNNNNNNGTC	1 cut(s)	105
EaeI	YGGCCR	3 cut(s)	71, 103, 245
Eam1104I	CTCTTC	3 cut(s)	740, 1053, 1133
EarI	CTCTTC	3 cut(s)	740, 1053, 1133
Eco47I	GGWCC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	531, 977
Eco88I	CYCGRG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	588
EcoT22I	ATGCAT	1 cut(s)	316
Esp3I	CGTCTC	1 cut(s)	91
FaeI	CATG	2 cut(s)	318, 1174
FaqI	GGGAC	2 cut(s)	79, 637
FatI	CATG	2 cut(s)	314, 1170
FauI	CCCGC	2 cut(s)	262, 955
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	156, 1014, 1026, 1029
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	4 cut(s)	156, 1014, 1026, 1029
FspBI	CTAG	4 cut(s)	8, 62, 698, 803
GluI	GCNGC	4 cut(s)	156, 1014, 1026, 1029
GsuI	CTGGAG	2 cut(s)	611, 726
HaeIII	GGCC	6 cut(s)	73, 105, 247, 443, 509, 953
HapII	CCGG	1 cut(s)	435
Hin1II	CATG	2 cut(s)	318, 1174
HindIII	AAGCTT	2 cut(s)	543, 918
HinfI	GANTC	2 cut(s)	295, 1034
HpaII	CCGG	1 cut(s)	435
Hpy166II	GTNNAC	2 cut(s)	195, 811
Hpy188I	TCNGA	2 cut(s)	677, 695
Hpy188III	TCNNGA	5 cut(s)	128, 236, 292, 451, 1182
Hpy8I	GTNNAC	2 cut(s)	195, 811
HpyAV	CCTTC	1 cut(s)	614
HpyCH4III	ACNGT	2 cut(s)	367, 989
HpyCH4IV	ACGT	2 cut(s)	100, 867
HpyCH4V	TGCA	5 cut(s)	263, 314, 494, 854, 1163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	959, 1022
HpyF3I	CTNAG	5 cut(s)	225, 284, 515, 534, 754
HpySE526I	ACGT	2 cut(s)	100, 867
Hsp92II	CATG	2 cut(s)	318, 1174
Kzo9I	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
LguI	GCTCTTC	1 cut(s)	1053
Lsp1109I	GCAGC	2 cut(s)	142, 1015
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	4 cut(s)	8, 62, 698, 803
MaeII	ACGT	2 cut(s)	100, 867
MaeIII	GTNAC	4 cut(s)	337, 601, 944, 1104
MalI	GATC	6 cut(s)	410, 425, 455, 487, 768, 1102
MboI	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
MflI	RGATCY	2 cut(s)	423, 485
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	2 cut(s)	186, 241
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	1028
MnlI	CCTC	5 cut(s)	17, 123, 299, 743, 887
Mox20I	TGGCCA	1 cut(s)	73
Mph1103I	ATGCAT	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	4 cut(s)	83, 750, 915, 926
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	1157
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	2 cut(s)	435, 590
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	1 cut(s)	590
MvnI	CGCG	2 cut(s)	458, 1025
MwoI	GCNNNNNNNGC	2 cut(s)	959, 1022
NciI	CCSGG	1 cut(s)	435
NdeII	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
NlaIII	CATG	2 cut(s)	318, 1174
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	1104
NsiI	ATGCAT	1 cut(s)	316
PciSI	GCTCTTC	1 cut(s)	1053
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	4 cut(s)	157, 1015, 1027, 1030
PleI	GAGTC	1 cut(s)	1028
PpsI	GAGTC	1 cut(s)	1028
Psp1406I	AACGTT	1 cut(s)	867
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	551, 951
PsuI	RGATCY	2 cut(s)	423, 485
PvuII	CAGCTG	1 cut(s)	1157
RsaI	GTAC	1 cut(s)	1063
RsaNI	GTAC	1 cut(s)	1062
RseI	CAYNNNNRTG	1 cut(s)	668
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	4 cut(s)	83, 750, 915, 926
SatI	GCNGC	4 cut(s)	156, 1014, 1026, 1029
Sau3AI	GATC	6 cut(s)	408, 423, 453, 485, 766, 1100
Sau96I	GGNCC	2 cut(s)	551, 951
SchI	GAGTC	1 cut(s)	1028
ScrFI	CCNGG	2 cut(s)	435, 590
SfaNI	GCATC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	366
SinI	GGWCC	1 cut(s)	551
SmiMI	CAYNNNNRTG	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	234, 647
SmoI	CTYRAG	2 cut(s)	234, 647
Sse9I	AATT	2 cut(s)	186, 241
SsiI	CCGC	8 cut(s)	269, 273, 458, 962, 975, 1005, 1014, 1025
SspMI	CTAG	4 cut(s)	8, 62, 698, 803
StyD4I	CCNGG	2 cut(s)	433, 588
TaaI	ACNGT	2 cut(s)	367, 989
TaiI	ACGT	2 cut(s)	103, 870
TasI	AATT	2 cut(s)	186, 241
TatI	WGTACW	1 cut(s)	1061
TauI	GCSGC	2 cut(s)	1016, 1028
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	4 cut(s)	83, 750, 915, 926
Tru9I	TTAA	4 cut(s)	83, 750, 915, 926
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	1104
TseI	GCWGC	2 cut(s)	155, 1028
Tsp45I	GTSAC	1 cut(s)	1104
TspDTI	ATGAA	3 cut(s)	208, 470, 1138
TspGWI	ACGGA	2 cut(s)	1027, 1123
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	551
XagI	CCTNNNNNAGG	1 cut(s)	618
XmiI	GTMKAC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	4 cut(s)	8, 62, 698, 803
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.