Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Reverse (-)

63756657 .. 63757699

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG385500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTATGTGGTGGAAAGCAAAGGAGGTGCTATAGCATGCATGCTCATTGCCTTGTCCTTCCTAGGCACTTTGCCTGCTGTCCTGACTATGTTAGAAAGACGAGGCCGGCTTCCCCAGCATACTTATCTGGACTACTCCATTACCAATTTTTTGGTTGCTGTACTCATTGCCTTCACATTTGGTCAGATAGGCAGCGGCACACCTGAGATGCCTAATTTCTTAACTCAACTTTCACAGGATAATTTTCCGAGTGTTCTATTCGCAATGGCGGGAGGGATAGTCCTCAGCCTTGGAAATCTGGCCACACAGTATGCTTGGGCTTTAGTTGGTCTGTCAGTGACAGAAGTGATCACTTCAAGCATCACAGTTGTTATAGGCACAACATTGAATTACTTCTTAGATGACAGAATTAATAGAGCAGAAGTTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCATACATCCAATGCAGCTGATAACAAAGTAAAACTTGACAGTTTGCCGAGTGATAAAAAAGATGGAGAAAAGGCTTCTAGTGTGAATCCAATTGAGAATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

194

Amino Acids

20.69

Weight (kDa)

5.04

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 186	8.2e-78	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	195, 269, 458
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	577
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	357, 388
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
AoxI	GGCC	2 cut(s)	103, 300
ApeKI	GCWGC	2 cut(s)	192, 494
ApoI	RAATTY	1 cut(s)	577
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	1 cut(s)	392
AspA2I	CCTAGG	1 cut(s)	61
AvrII	CCTAGG	1 cut(s)	61
BalI	TGGCCA	1 cut(s)	302
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	204, 506
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	348
BfaI	CTAG	2 cut(s)	62, 558
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	3 cut(s)	193, 196, 495
BlnI	CCTAGG	1 cut(s)	61
BlsI	GCNGC	3 cut(s)	194, 197, 496
Bme1390I	CCNGG	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	2 cut(s)	198, 369
Bpu10I	CCTNAGC	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	61, 289, 433
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bse118I	RCCGGY	1 cut(s)	105
Bse3DI	GCAATG	3 cut(s)	45, 165, 270
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	61, 289, 433
BseGI	GGATG	1 cut(s)	485
BseMI	GCAATG	3 cut(s)	45, 165, 270
BseMII	CTCAG	2 cut(s)	195, 298
BseXI	GCAGC	2 cut(s)	204, 506
BseYI	CCCAGC	1 cut(s)	114
BshFI	GGCC	2 cut(s)	105, 302
BsiSI	CCGG	1 cut(s)	106
BsnI	GGCC	2 cut(s)	105, 302
Bsp143I	GATC	1 cut(s)	348
BspACI	CCGC	3 cut(s)	195, 269, 458
BspANI	GGCC	2 cut(s)	105, 302
BspCNI	CTCAG	2 cut(s)	196, 297
BsrDI	GCAATG	3 cut(s)	45, 165, 270
BsrFI	RCCGGY	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	3 cut(s)	61, 289, 433
BssMI	GATC	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	61, 289
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	3 cut(s)	309, 367, 521
BstC8I	GCNNGC	5 cut(s)	37, 41, 75, 107, 445
BstDEI	CTNAG	3 cut(s)	204, 284, 397
BstF5I	GGATG	1 cut(s)	485
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	2 cut(s)	39, 43
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	204, 506
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	105, 302
BtsCI	GGATG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	5 cut(s)	37, 41, 75, 107, 445
Cfr10I	RCCGGY	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	2 cut(s)	36, 40
CviJI	RGCY	8 cut(s)	105, 109, 288, 302, 320, 471, 497, 554
CviKI_1	RGCY	8 cut(s)	105, 109, 288, 302, 320, 471, 497, 554
CviQI	GTAC	1 cut(s)	161
DdeI	CTNAG	3 cut(s)	204, 284, 397
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	300
Eco130I	CCWWGG	2 cut(s)	61, 289
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	61, 289
EcoT22I	ATGCAT	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	61, 289
FaeI	CATG	2 cut(s)	39, 43
FaiI	YATR	9 cut(s)	6, 32, 37, 41, 89, 120, 312, 374, 483
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FatI	CATG	2 cut(s)	35, 39
FauI	CCCGC	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	193, 196, 495
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	3 cut(s)	193, 196, 495
FspBI	CTAG	2 cut(s)	62, 558
GluI	GCNGC	3 cut(s)	193, 196, 495
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	105, 302
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	2 cut(s)	39, 43
HinfI	GANTC	1 cut(s)	565
HpaII	CCGG	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	186, 249
Hpy188III	TCNNGA	3 cut(s)	82, 128, 451
HpyAV	CCTTC	2 cut(s)	67, 181
HpyCH4III	ACNGT	3 cut(s)	309, 367, 521
HpyCH4V	TGCA	2 cut(s)	39, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	3 cut(s)	204, 284, 397
Hsp92II	CATG	2 cut(s)	39, 43
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	348
Lsp1109I	GCAGC	2 cut(s)	204, 506
LweI	GCATC	2 cut(s)	198, 369
MaeI	CTAG	2 cut(s)	62, 558
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MfeI	CAATTG	1 cut(s)	570
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	7 cut(s)	145, 214, 241, 388, 408, 570, 577
MluNI	TGGCCA	1 cut(s)	302
MnlI	CCTC	4 cut(s)	17, 95, 266, 293
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	105
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	221, 411
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	2 cut(s)	195, 497
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	1 cut(s)	115
NaeI	GCCGGC	1 cut(s)	107
NdeII	GATC	1 cut(s)	348
NgoMIV	GCCGGC	1 cut(s)	105
NlaIII	CATG	2 cut(s)	39, 43
NmeAIII	GCCGAG	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	2 cut(s)	39, 43
PaeI	GCATGC	2 cut(s)	39, 43
PdiI	GCCGGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	565
PkrI	GCNGC	3 cut(s)	194, 197, 496
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	433
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	221, 411
SatI	GCNGC	3 cut(s)	193, 196, 495
Sau3AI	GATC	1 cut(s)	348
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	3 cut(s)	28, 205, 499
SfaNI	GCATC	2 cut(s)	198, 369
SfcI	CTRYAG	1 cut(s)	30
SphI	GCATGC	2 cut(s)	39, 43
Sse9I	AATT	7 cut(s)	145, 214, 241, 388, 408, 570, 577
SsiI	CCGC	3 cut(s)	195, 269, 458
SspMI	CTAG	2 cut(s)	62, 558
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	2 cut(s)	61, 289
TaaI	ACNGT	3 cut(s)	309, 367, 521
TasI	AATT	7 cut(s)	145, 214, 241, 388, 408, 570, 577
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	2 cut(s)	221, 411
Tru9I	TTAA	2 cut(s)	221, 411
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	192, 494
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	1 cut(s)	470
TspRI	CASTG	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	2 cut(s)	39, 43
XmaJI	CCTAGG	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	2 cut(s)	62, 558
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.