FvH4_4g30102

Ureide permease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
29908699 .. 29911765
3067 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30102.t1

Sequence Viewer

Length: 1197 bp
ATGTATGTGGTGGAAAGCAAAGGAGGTGCCGTAGCATGCATGCTGCTGGCCTTGATCTTATTGGGGACATGGCCTGCTGTCCTGACTATGCTGGAAAGAAGAGGCCGGCTTCCTCAGCATACTTATCTGGATTACTCTATCACCAATTTCTTGGCTGCTGTTCTGATTGCTTTGACATTTGGTCAGATAGGCAGTAGCACACCTGACAAGCCCAATTTTATAACTCAACTTTCACAGGATAATTTTCACAGTGTGTTATTCGCAATGGTGGGTGGGATAGTCCTGAGCCTTGGAAATCTTTCTACACAGTATGCATGGGCTTTAGTTGGTTTATCAGTGACAGAAGTGATAACTGCAAGCATCACAACTATCATAGGCACAACATTAAATTACTTCTTAGATGACAGAATAAATAGAGCAGAAATTCTATTCCCTGGTGTTGCTTGCTTCTTGATTGCCGTTTGTCTTGGCTCTGCTGTTCACTCATCCAATGCAGCTGATAACAAAGTAAAACTTGACAGTGTTGACAGTGATCCAAAAGATGTAGAAAAGGCTTCAAAACAAATTCCAAATAAGGATGGGTTGAAGGAGTTGGAGAGTGCACATGAGAAAGCGAAGGCTGGAACTGCAGACTTTCTTGTACAGCTTGAGGACCAAAGAGCAATTAAGGTTTTTGGGAAGAGCACAATTGTTGGACTAGCCATATGTTTCTTTGCCGGACTTTGCTTCTCCCTCTTCTCACCAGCATTCAATGTCGCCACAAATGATCAGTGGCATACTTTGAAGAAAGGAGTTCCTCATTTGGTTGTCTATACTGCGTTTTTCTACTTCTCGTTATCTTGTTTTGTCCTTGCTATCATTTTAAACATCATCTTCCTCTACCGCCCTATACTAGGCTTACCCAAGACAACATTCAAAGCTTATTTGAATGACTGGAATGGTAGGGGTTGGGCCCTTTTGGCCGGTGTCCTATGTGGATTTGGAAATGGTCTCCAATTCATGGGAGGCCAAGCTGCAGGATATGCTGCAGCTGATTCTGTTCAGGCACTTCCACTTGTGAGCACTTTCTGGGGCATACTTCTGTTTGGAGAATACCGAAAATCGTCACGAAGAACATATGTATTGCTTACTGGCATGTTGACGATGTTTATTGTTGCAGTTGCCGTCCTCATGGCATCAGCGGGGCATCGAAAATGA

Protein Analysis

399

Amino Acids

43.14

Weight (kDa)

8.73

Isoelectric Point (pI)

26.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ureide_permease PF07168 41 - 393 3.5e-193 Ureide permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 1000
AciI CCGC 2 cut(s) 883, 1181
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 2 cut(s) 423, 564
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 2 cut(s) 893, 1000
AgsI TTSAA 6 cut(s) 558, 586, 751, 784, 916, 928
AhdI GACNNNNNGTC 1 cut(s) 180
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
AluBI AGCT 5 cut(s) 497, 646, 920, 1013, 1031
AluI AGCT 5 cut(s) 497, 646, 920, 1013, 1031
Alw21I GWGCWC 3 cut(s) 604, 686, 1064
Alw26I GTCTC 1 cut(s) 995
Alw44I GTGCAC 1 cut(s) 600
AlwI GGATC 1 cut(s) 527
AoxI GGCC 6 cut(s) 48, 71, 103, 951, 960, 1006
ApaI GGGCCC 1 cut(s) 955
ApaLI GTGCAC 1 cut(s) 600
ApeKI GCWGC 6 cut(s) 43, 155, 494, 1013, 1025, 1028
ApoI RAATTY 2 cut(s) 423, 564
Asp700I GAANNNNTTC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 652, 951, 952
AsuHPI GGTGA 2 cut(s) 133, 732
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 2 cut(s) 604, 955
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 955
Bbv12I GWGCWC 3 cut(s) 604, 686, 1064
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 6 cut(s) 30, 142, 506, 1000, 1012, 1040
BccI CCATC 1 cut(s) 572
BceAI ACGGC 3 cut(s) 14, 443, 1148
BciT130I CCWGG 1 cut(s) 435
BclI TGATCA 1 cut(s) 766
BcoDI GTCTC 1 cut(s) 995
BfaI CTAG 2 cut(s) 698, 893
BfmI CTRYAG 3 cut(s) 627, 1014, 1026
BglI GCCNNNNNGGC 1 cut(s) 959
BisI GCNGC 6 cut(s) 44, 156, 495, 1014, 1026, 1029
BlsI GCNGC 6 cut(s) 45, 157, 496, 1015, 1027, 1030
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 652
BmeRI GACNNNNNGTC 1 cut(s) 180
BmgT120I GGNCC 3 cut(s) 652, 951, 952
BmiI GGNNCC 2 cut(s) 28, 953
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 2 cut(s) 369, 1184
Bpu10I CCTNAGC 2 cut(s) 114, 284
BpuEI CTTGAG 1 cut(s) 668
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 2 cut(s) 289, 433
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 2 cut(s) 893, 1000
Bse118I RCCGGY 2 cut(s) 105, 962
Bse1I ACTGG 2 cut(s) 938, 1135
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 2 cut(s) 289, 433
BseGI GGATG 2 cut(s) 485, 583
BseLI CCNNNNNNNGG 2 cut(s) 893, 1000
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 128, 275
BseNI ACTGG 2 cut(s) 938, 1135
BseSI GKGCMC 2 cut(s) 604, 955
BseXI GCAGC 6 cut(s) 30, 142, 506, 1000, 1012, 1040
BshFI GGCC 6 cut(s) 50, 73, 105, 953, 962, 1008
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 3 cut(s) 604, 686, 1064
BsiSI CCGG 3 cut(s) 106, 717, 963
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 893, 1000
BsmAI GTCTC 1 cut(s) 995
BsmFI GGGAC 1 cut(s) 79
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 6 cut(s) 50, 73, 105, 953, 962, 1008
Bso31I GGTCTC 1 cut(s) 995
Bsp120I GGGCCC 1 cut(s) 951
Bsp1286I GDGCHC 4 cut(s) 604, 686, 955, 1064
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 3 cut(s) 54, 532, 766
BspACI CCGC 2 cut(s) 883, 1181
BspANI GGCC 6 cut(s) 50, 73, 105, 953, 962, 1008
BspCNI CTCAG 2 cut(s) 127, 276
BspLI GGNNCC 2 cut(s) 28, 953
BspMAI CTGCAG 3 cut(s) 631, 1018, 1030
BspPI GGATC 1 cut(s) 527
BspQI GCTCTTC 1 cut(s) 674
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 270
BsrFI RCCGGY 2 cut(s) 105, 962
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 2 cut(s) 938, 1135
BssAI RCCGGY 2 cut(s) 105, 962
BssECI CCNNGG 2 cut(s) 289, 433
BssMI GATC 3 cut(s) 54, 532, 766
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 4 cut(s) 251, 309, 521, 530
Bst6I CTCTTC 3 cut(s) 94, 674, 740
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 7 cut(s) 37, 41, 48, 75, 107, 358, 445
BstDEI CTNAG 3 cut(s) 114, 284, 397
BstENI CCTNNNNNAGG 1 cut(s) 891
BstF5I GGATG 2 cut(s) 485, 583
BstKTI GATC 3 cut(s) 57, 535, 769
BstMAI GTCTC 1 cut(s) 995
BstMBI GATC 3 cut(s) 54, 532, 766
BstMWI GCNNNNNNNGC 4 cut(s) 115, 626, 959, 1022
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 3 cut(s) 39, 43, 1138
BstSCI CCNGG 1 cut(s) 433
BstSFI CTRYAG 3 cut(s) 627, 1014, 1026
BstSLI GKGCMC 2 cut(s) 604, 955
BstV1I GCAGC 6 cut(s) 30, 142, 506, 1000, 1012, 1040
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 6 cut(s) 50, 73, 105, 953, 962, 1008
BtsCI GGATG 2 cut(s) 485, 583
BtsIMutI CAGTG 5 cut(s) 256, 342, 526, 535, 776
Cac8I GCNNGC 7 cut(s) 37, 41, 48, 75, 107, 358, 445
Cfr10I RCCGGY 2 cut(s) 105, 962
Cfr13I GGNCC 3 cut(s) 652, 951, 952
Csp6I GTAC 1 cut(s) 641
CviAII CATG 8 cut(s) 36, 40, 69, 315, 605, 1000, 1135, 1171
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 3 cut(s) 114, 284, 397
DpnI GATC 3 cut(s) 56, 534, 768
DpnII GATC 3 cut(s) 54, 532, 766
DraI TTTAAA 1 cut(s) 864
DraIII CACNNNGTG 1 cut(s) 253
DriI GACNNNNNGTC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 3 cut(s) 94, 674, 740
Eam1105I GACNNNNNGTC 1 cut(s) 180
EarI CTCTTC 3 cut(s) 94, 674, 740
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 955
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 1 cut(s) 652
EcoNI CCTNNNNNAGG 1 cut(s) 891
EcoO109I RGGNCCY 1 cut(s) 952
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 289
EcoT22I ATGCAT 2 cut(s) 41, 316
EcoT38I GRGCYC 1 cut(s) 955
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 8 cut(s) 39, 43, 72, 318, 608, 1003, 1138, 1174
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 1 cut(s) 79
FatI CATG 8 cut(s) 35, 39, 68, 314, 604, 999, 1134, 1170
FauI CCCGC 1 cut(s) 1174
FauNDI CATATG 2 cut(s) 704, 1117
FbaI TGATCA 1 cut(s) 766
Fnu4HI GCNGC 6 cut(s) 44, 156, 495, 1014, 1026, 1029
FokI GGATG 2 cut(s) 472, 590
FriOI GRGCYC 1 cut(s) 955
Fsp4HI GCNGC 6 cut(s) 44, 156, 495, 1014, 1026, 1029
FspBI CTAG 2 cut(s) 698, 893
GluI GCNGC 6 cut(s) 44, 156, 495, 1014, 1026, 1029
HaeIII GGCC 6 cut(s) 50, 73, 105, 953, 962, 1008
HapII CCGG 3 cut(s) 106, 717, 963
Hin1II CATG 8 cut(s) 39, 43, 72, 318, 608, 1003, 1138, 1174
HincII GTYRAC 2 cut(s) 526, 1140
HindII GTYRAC 2 cut(s) 526, 1140
HindIII AAGCTT 1 cut(s) 918
HinfI GANTC 1 cut(s) 1034
HpaII CCGG 3 cut(s) 106, 717, 963
HphI GGTGA 2 cut(s) 133, 732
Hpy166II GTNNAC 4 cut(s) 481, 526, 602, 1140
Hpy188I TCNGA 2 cut(s) 165, 186
Hpy188III TCNNGA 5 cut(s) 82, 128, 283, 451, 1107
Hpy8I GTNNAC 4 cut(s) 481, 526, 602, 1140
HpyAV CCTTC 2 cut(s) 580, 610
HpyCH4III ACNGT 4 cut(s) 251, 309, 521, 530
HpyCH4V TGCA 9 cut(s) 39, 314, 356, 494, 602, 629, 1016, 1028, 1157
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 626, 959, 1022
HpyF3I CTNAG 3 cut(s) 114, 284, 397
Hsp92II CATG 8 cut(s) 39, 43, 72, 318, 608, 1003, 1138, 1174
KroI GCCGGC 1 cut(s) 105
KroNI GCCGGC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 766
Kzo9I GATC 3 cut(s) 54, 532, 766
LguI GCTCTTC 1 cut(s) 674
Lsp1109I GCAGC 6 cut(s) 30, 142, 506, 1000, 1012, 1040
LweI GCATC 2 cut(s) 369, 1184
MaeI CTAG 2 cut(s) 698, 893
MaeIII GTNAC 2 cut(s) 337, 1104
MalI GATC 3 cut(s) 56, 534, 768
MboI GATC 3 cut(s) 54, 532, 766
MboII GAAGA 6 cut(s) 111, 691, 727, 796, 865, 1122
MfeI CAATTG 1 cut(s) 687
MhlI GDGCHC 4 cut(s) 604, 686, 955, 1064
MluCI AATT 9 cut(s) 145, 214, 241, 388, 423, 564, 663, 687, 995
MmeI TCCRAC 2 cut(s) 573, 673
MnlI CCTC 9 cut(s) 17, 95, 123, 643, 743, 807, 887, 998, 1178
Mph1103I ATGCAT 2 cut(s) 41, 316
MroNI GCCGGC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 298
MseI TTAA 3 cut(s) 386, 666, 863
MspA1I CMGCKG 3 cut(s) 497, 1031, 1181
MspI CCGG 3 cut(s) 106, 717, 963
MspR9I CCNGG 1 cut(s) 435
MunI CAATTG 1 cut(s) 687
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 4 cut(s) 115, 626, 959, 1022
NaeI GCCGGC 1 cut(s) 107
NdeI CATATG 2 cut(s) 704, 1117
NdeII GATC 3 cut(s) 54, 532, 766
NgoMIV GCCGGC 1 cut(s) 105
NlaIII CATG 8 cut(s) 39, 43, 72, 318, 608, 1003, 1138, 1174
NlaIV GGNNCC 2 cut(s) 28, 953
NmuCI GTSAC 2 cut(s) 337, 1104
NsiI ATGCAT 2 cut(s) 41, 316
NspI RCATGY 3 cut(s) 39, 43, 1138
PaeI GCATGC 2 cut(s) 39, 43
PciSI GCTCTTC 1 cut(s) 674
PctI GAATGC 1 cut(s) 746
PdiI GCCGGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 1034
PflMI CCANNNNNTGG 1 cut(s) 1000
PkrI GCNGC 6 cut(s) 45, 157, 496, 1015, 1027, 1030
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 433
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 28, 953
PspOMI GGGCCC 1 cut(s) 951
PspPI GGNCC 3 cut(s) 652, 951, 952
PstI CTGCAG 3 cut(s) 631, 1018, 1030
PvuII CAGCTG 2 cut(s) 497, 1031
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 674
SaqAI TTAA 3 cut(s) 386, 666, 863
SatI GCNGC 6 cut(s) 44, 156, 495, 1014, 1026, 1029
Sau3AI GATC 3 cut(s) 54, 532, 766
Sau96I GGNCC 3 cut(s) 652, 951, 952
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 4 cut(s) 604, 686, 955, 1064
SetI ASST 8 cut(s) 28, 205, 499, 648, 672, 922, 1015, 1033
SfaNI GCATC 2 cut(s) 369, 1184
SfcI CTRYAG 3 cut(s) 627, 1014, 1026
SfiI GGCCNNNNNGGCC 1 cut(s) 959
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SphI GCATGC 2 cut(s) 39, 43
Sse9I AATT 9 cut(s) 145, 214, 241, 388, 423, 564, 663, 687, 995
SsiI CCGC 2 cut(s) 883, 1181
SspMI CTAG 2 cut(s) 698, 893
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 251, 309, 521, 530
TaqI TCGA 1 cut(s) 1189
TasI AATT 9 cut(s) 145, 214, 241, 388, 423, 564, 663, 687, 995
TatI WGTACW 1 cut(s) 640
TfiI GAWTC 1 cut(s) 1034
Tru1I TTAA 3 cut(s) 386, 666, 863
Tru9I TTAA 3 cut(s) 386, 666, 863
TscAI CASTG 5 cut(s) 256, 342, 526, 535, 776
TseFI GTSAC 2 cut(s) 337, 1104
TseI GCWGC 6 cut(s) 43, 155, 494, 1013, 1025, 1028
Tsp45I GTSAC 2 cut(s) 337, 1104
TspDTI ATGAA 1 cut(s) 988
TspRI CASTG 5 cut(s) 256, 342, 526, 535, 776
Van91I CCANNNNNTGG 1 cut(s) 1000
VneI GTGCAC 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 652
XagI CCTNNNNNAGG 1 cut(s) 891
XapI RAATTY 2 cut(s) 423, 564
XceI RCATGY 3 cut(s) 39, 43, 1138
XmnI GAANNNNTTC 1 cut(s) 298
XspI CTAG 2 cut(s) 698, 893
Zsp2I ATGCAT 2 cut(s) 41, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.