Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Forward (+)

6524520 .. 6526594

Gene Structure 2075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTATGTGGTGGATAGCAAAGGAGGTGCTATAGCATGCATGCTGCTGGCATTGTTGTTATTGGGGACATGGCCTGCTGTCCTGACTATGCTCGAAAGAAGAGGCCGGCTTCCTCAGCATACTTATTTGGATTACTCTATCACCAATTTCTTGGTTGCTGTTCTGATTGCTTTGACATTTGGTCAGATAGGCAGGAGCACACCTGACAAGCCCAATTTTATAACTCAACTTTCACAGGATAATTTGCCTAGTGTTTTATTCGCAATGGCGGGTGGGATAGTCCTGAGCCTTGGAAATCTTTCTTCACAGTATGCATTTGCTTTAGTTGGTTTGTCACTGACAGAGGTGATCACTGCAAGCATCACAACTGTCATAGGCACAACCTTGAATTACTTCTTAGACAACAGAATTAATAGAGCCGAGATTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCACTCGTCCAATGCAGCTGATAACAAAGTAAAACTTGACAGTTTTCCCAGTGATTCAAAAGATGGAGAGAAGGCTCTAAAACAAATTCCAGATAAGGATGGGTTAAAGGATTTGGAGAGTGGAAATGAGAAAGCGAAGGCTGGCACTGCAGACTATCTTTTACAGATTGAGAACCAAAGAGCAATTAAGGTGTTTGGGAAGAAGACTTACATTGGACTGGCCATAACTTTCTTTGCGGGACTTTGCTTCTCCCTCTTCACACCAGCATTCAACGTGGCCACAAATGATCAGTGGCATACTTTGAAGAAAGGAGTTCCTCATTTGGTTGTCTATACTGCATTTTTCTACTTCTCAGCATCTTGTTTCGTCATTGCTATCATTTTAAACACCATCTTCCTTTACCGCCCTATACTAGACTTACCCAAAAGTTCATTCAAAGCTTACTTGAACGACTGGGAGGGCAGGGGTTGGGCCCTTTTGGCTGGTCTCATATGTGGATTCGGCAACGGTCTCCAATTCATGGGAGGTCAAGCTGCAGGATATGCAGCAGCTGATTCTGTTCAGGCACTTCCACTTGTGAGCACTTTCTGGGGCATACTTCTGTTTGGAGAATACCGAAAATCGTCACAAAGAACATATATATTGCTTACTAGCATGTTGATTATGTTTATTGTTGCTGTTGCTGTCCTCATGGCATCATCAGGGCATCGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005345 GO:0005350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0006863 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0042906 GO:0042907 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:0072530 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

399

Amino Acids

43.23

Weight (kDa)

8.88

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 393	5.9e-192	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	1000
AciI	CCGC	4 cut(s)	269, 458, 716, 883
AcoI	YGGCCR	2 cut(s)	699, 756
AcsI	RAATTY	1 cut(s)	564
AfiI	CCNNNNNNNGG	1 cut(s)	1000
AgsI	TTSAA	6 cut(s)	388, 537, 751, 784, 916, 928
AhdI	GACNNNNNGTC	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	433
AjuI	GAANNNNNNNTTGG	2 cut(s)	896, 928
AluBI	AGCT	4 cut(s)	497, 920, 1013, 1031
AluI	AGCT	4 cut(s)	497, 920, 1013, 1031
Alw21I	GWGCWC	2 cut(s)	200, 1064
Alw26I	GTCTC	2 cut(s)	971, 995
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	5 cut(s)	71, 103, 699, 756, 951
ApaI	GGGCCC	1 cut(s)	955
ApeKI	GCWGC	5 cut(s)	43, 494, 1013, 1025, 1028
ApoI	RAATTY	1 cut(s)	564
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	2 cut(s)	298, 392
AspS9I	GGNCC	2 cut(s)	951, 952
AsuHPI	GGTGA	2 cut(s)	133, 358
BaeGI	GKGCMC	1 cut(s)	955
BalI	TGGCCA	2 cut(s)	701, 758
BanII	GRGCYC	1 cut(s)	955
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	200, 1064
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	5 cut(s)	30, 506, 1000, 1037, 1040
BccI	CCATC	3 cut(s)	536, 572, 878
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	2 cut(s)	348, 766
BcoDI	GTCTC	2 cut(s)	971, 995
BfaI	CTAG	3 cut(s)	249, 893, 1131
BfmI	CTRYAG	3 cut(s)	30, 627, 1014
BglI	GCCNNNNNGGC	1 cut(s)	959
BisI	GCNGC	5 cut(s)	44, 495, 1014, 1026, 1029
BlsI	GCNGC	5 cut(s)	45, 496, 1015, 1027, 1030
Bme1390I	CCNGG	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	951, 952
BmiI	GGNNCC	1 cut(s)	953
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	2 cut(s)	522, 943
BmsI	GCATC	3 cut(s)	369, 845, 1184
BmuI	ACTGGG	2 cut(s)	522, 943
BpiI	GAAGAC	1 cut(s)	689
Bpu10I	CCTNAGC	2 cut(s)	114, 284
BsaI	GGTCTC	2 cut(s)	971, 995
BsaJI	CCNNGG	2 cut(s)	289, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	1000
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	528, 702, 938
Bse3DI	GCAATG	2 cut(s)	270, 849
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	289, 433
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	1 cut(s)	1000
BseMI	GCAATG	2 cut(s)	270, 849
BseMII	CTCAG	3 cut(s)	128, 275, 846
BseNI	ACTGG	3 cut(s)	528, 702, 938
BseSI	GKGCMC	1 cut(s)	955
BseXI	GCAGC	5 cut(s)	30, 506, 1000, 1037, 1040
BshFI	GGCC	5 cut(s)	73, 105, 701, 758, 953
BsiHKAI	GWGCWC	2 cut(s)	200, 1064
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	79, 732
BslI	CCNNNNNNNGG	1 cut(s)	1000
BsmAI	GTCTC	2 cut(s)	971, 995
BsmFI	GGGAC	2 cut(s)	79, 732
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	5 cut(s)	73, 105, 701, 758, 953
Bso31I	GGTCTC	2 cut(s)	971, 995
Bsp120I	GGGCCC	1 cut(s)	951
Bsp1286I	GDGCHC	3 cut(s)	200, 955, 1064
Bsp143I	GATC	2 cut(s)	348, 766
BspACI	CCGC	4 cut(s)	269, 458, 716, 883
BspANI	GGCC	5 cut(s)	73, 105, 701, 758, 953
BspCNI	CTCAG	3 cut(s)	127, 276, 845
BspLI	GGNNCC	1 cut(s)	953
BspMAI	CTGCAG	2 cut(s)	631, 1018
BspTNI	GGTCTC	2 cut(s)	971, 995
BsrDI	GCAATG	2 cut(s)	270, 849
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	528, 702, 938
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	2 cut(s)	289, 433
BssMI	GATC	2 cut(s)	348, 766
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	4 cut(s)	309, 370, 521, 989
Bst6I	CTCTTC	2 cut(s)	94, 740
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstC8I	GCNNGC	8 cut(s)	37, 41, 48, 75, 107, 358, 445, 622
BstDEI	CTNAG	4 cut(s)	114, 284, 397, 832
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	2 cut(s)	351, 769
BstMAI	GTCTC	2 cut(s)	971, 995
BstMBI	GATC	2 cut(s)	348, 766
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 626, 959, 1022
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	3 cut(s)	39, 43, 1138
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	3 cut(s)	30, 627, 1014
BstSLI	GKGCMC	1 cut(s)	955
BstV1I	GCAGC	5 cut(s)	30, 506, 1000, 1037, 1040
BstV2I	GAAGAC	1 cut(s)	689
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuRI	GGCC	5 cut(s)	73, 105, 701, 758, 953
BtsCI	GGATG	1 cut(s)	583
BtsI	GCAGTG	2 cut(s)	351, 624
BtsIMutI	CAGTG	5 cut(s)	335, 351, 535, 624, 776
Cac8I	GCNNGC	8 cut(s)	37, 41, 48, 75, 107, 358, 445, 622
CaiI	CAGNNNCTG	1 cut(s)	1031
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	951, 952
CviAII	CATG	6 cut(s)	36, 40, 69, 1000, 1135, 1171
DdeI	CTNAG	4 cut(s)	114, 284, 397, 832
DpnI	GATC	2 cut(s)	350, 768
DpnII	GATC	2 cut(s)	348, 766
DraI	TTTAAA	1 cut(s)	864
DriI	GACNNNNNGTC	1 cut(s)	180
EaeI	YGGCCR	2 cut(s)	699, 756
Eam1104I	CTCTTC	2 cut(s)	94, 740
Eam1105I	GACNNNNNGTC	1 cut(s)	180
EarI	CTCTTC	2 cut(s)	94, 740
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	955
Eco31I	GGTCTC	2 cut(s)	971, 995
EcoO109I	RGGNCCY	1 cut(s)	952
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	289
EcoT22I	ATGCAT	2 cut(s)	41, 316
EcoT38I	GRGCYC	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	6 cut(s)	39, 43, 72, 1003, 1138, 1174
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	2 cut(s)	79, 732
FatI	CATG	6 cut(s)	35, 39, 68, 999, 1134, 1170
FauI	CCCGC	2 cut(s)	262, 709
FauNDI	CATATG	1 cut(s)	971
FbaI	TGATCA	2 cut(s)	348, 766
Fnu4HI	GCNGC	5 cut(s)	44, 495, 1014, 1026, 1029
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	955
Fsp4HI	GCNGC	5 cut(s)	44, 495, 1014, 1026, 1029
FspBI	CTAG	3 cut(s)	249, 893, 1131
GluI	GCNGC	5 cut(s)	44, 495, 1014, 1026, 1029
HaeIII	GGCC	5 cut(s)	73, 105, 701, 758, 953
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	6 cut(s)	39, 43, 72, 1003, 1138, 1174
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	4 cut(s)	424, 533, 978, 1034
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	2 cut(s)	133, 358
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	2 cut(s)	165, 186
Hpy188III	TCNNGA	4 cut(s)	82, 283, 451, 569
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	2 cut(s)	544, 610
HpyCH4III	ACNGT	4 cut(s)	309, 370, 521, 989
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	8 cut(s)	39, 314, 356, 494, 629, 818, 1016, 1025
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 626, 959, 1022
HpyF3I	CTNAG	4 cut(s)	114, 284, 397, 832
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	6 cut(s)	39, 43, 72, 1003, 1138, 1174
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	2 cut(s)	348, 766
Kzo9I	GATC	2 cut(s)	348, 766
LmnI	GCTCC	1 cut(s)	195
Lsp1109I	GCAGC	5 cut(s)	30, 506, 1000, 1037, 1040
LweI	GCATC	3 cut(s)	369, 845, 1184
MaeI	CTAG	3 cut(s)	249, 893, 1131
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	2 cut(s)	333, 1104
MalI	GATC	2 cut(s)	350, 768
MboI	GATC	2 cut(s)	348, 766
MboII	GAAGA	7 cut(s)	111, 294, 691, 694, 727, 796, 865
MhlI	GDGCHC	3 cut(s)	200, 955, 1064
MlsI	TGGCCA	2 cut(s)	701, 758
MluCI	AATT	8 cut(s)	145, 214, 241, 388, 408, 564, 663, 995
MluNI	TGGCCA	2 cut(s)	701, 758
MnlI	CCTC	9 cut(s)	17, 95, 123, 337, 743, 807, 931, 998, 1178
Mox20I	TGGCCA	2 cut(s)	701, 758
Mph1103I	ATGCAT	2 cut(s)	41, 316
MroNI	GCCGGC	1 cut(s)	105
MroXI	GAANNNNTTC	2 cut(s)	298, 392
MscI	TGGCCA	2 cut(s)	701, 758
MseI	TTAA	4 cut(s)	411, 584, 666, 863
Msp20I	TGGCCA	2 cut(s)	701, 758
MspA1I	CMGCKG	2 cut(s)	497, 1031
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	115, 626, 959, 1022
NaeI	GCCGGC	1 cut(s)	107
NdeI	CATATG	1 cut(s)	971
NdeII	GATC	2 cut(s)	348, 766
NgoMIV	GCCGGC	1 cut(s)	105
NlaIII	CATG	6 cut(s)	39, 43, 72, 1003, 1138, 1174
NlaIV	GGNNCC	1 cut(s)	953
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	2 cut(s)	333, 1104
NsiI	ATGCAT	2 cut(s)	41, 316
NspI	RCATGY	3 cut(s)	39, 43, 1138
PaeI	GCATGC	2 cut(s)	39, 43
PctI	GAATGC	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	107
PdmI	GAANNNNTTC	2 cut(s)	298, 392
PfeI	GAWTC	4 cut(s)	424, 533, 978, 1034
PflMI	CCANNNNNTGG	1 cut(s)	1000
PkrI	GCNGC	5 cut(s)	45, 496, 1015, 1027, 1030
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	1 cut(s)	953
PspOMI	GGGCCC	1 cut(s)	951
PspPI	GGNCC	2 cut(s)	951, 952
PstI	CTGCAG	2 cut(s)	631, 1018
PstNI	CAGNNNCTG	1 cut(s)	1031
PvuII	CAGCTG	2 cut(s)	497, 1031
SaqAI	TTAA	4 cut(s)	411, 584, 666, 863
SatI	GCNGC	5 cut(s)	44, 495, 1014, 1026, 1029
Sau3AI	GATC	2 cut(s)	348, 766
Sau96I	GGNCC	2 cut(s)	951, 952
ScrFI	CCNGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	200, 955, 1064
SfaNI	GCATC	3 cut(s)	369, 845, 1184
SfcI	CTRYAG	3 cut(s)	30, 627, 1014
SphI	GCATGC	2 cut(s)	39, 43
Sse9I	AATT	8 cut(s)	145, 214, 241, 388, 408, 564, 663, 995
SsiI	CCGC	4 cut(s)	269, 458, 716, 883
SspMI	CTAG	3 cut(s)	249, 893, 1131
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	4 cut(s)	309, 370, 521, 989
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	2 cut(s)	93, 1189
TasI	AATT	8 cut(s)	145, 214, 241, 388, 408, 564, 663, 995
TfiI	GAWTC	4 cut(s)	424, 533, 978, 1034
Tru1I	TTAA	4 cut(s)	411, 584, 666, 863
Tru9I	TTAA	4 cut(s)	411, 584, 666, 863
TscAI	CASTG	5 cut(s)	342, 358, 535, 631, 776
TseFI	GTSAC	2 cut(s)	333, 1104
TseI	GCWGC	5 cut(s)	43, 494, 1013, 1025, 1028
Tsp45I	GTSAC	2 cut(s)	333, 1104
TspDTI	ATGAA	2 cut(s)	900, 988
TspRI	CASTG	5 cut(s)	342, 358, 535, 631, 776
Van91I	CCANNNNNTGG	1 cut(s)	1000
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	3 cut(s)	39, 43, 1138
XmnI	GAANNNNTTC	2 cut(s)	298, 392
XspI	CTAG	3 cut(s)	249, 893, 1131
Zsp2I	ATGCAT	2 cut(s)	41, 316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.