Rw0G016480

Ureide permease

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
Physical Location & Seq
Reverse (-)
336552 .. 338880
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016480.1

Sequence Viewer

Length: 1251 bp
ATGATTGGAATTTTTCGAGTGAGGTTAAAGATGTATGTGGTGGATAGCAAAGGAGGTGCTATAGCATGCATGCTGCTGGCACTGTTCTTATTGGGGACATGGCCTGCTGTCCTGACTATGCTCGAAAGAAGAGGCCGGCTTCCTCAGCATACTTATTTGGATTACTCTATCACCAATTTGTTGGTTGCTGTTCTGATTGCTTTGACATTTGGTCAGATAGGCAGTAGCACACCTGACAAGCCCAATTTTATAACTCAACTTTCACAGGATAATTTGCCTAGCGTTTTATTCGCAATGGCGGGTGGGATAGTCCTGAGCCTTGGAAATCTTTCTTCACAGTATGCATTTGCTTTAGTTGGTTTGTCACTGACAGAGGTGATCACTGCAAGCATCACAACTGTCATAGGCACAACCTTGAATTACTTCTTAGACAACAGAATTAATAGAGCCGAGATTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCACTCGTCCAACGCAGCTGATAACAAAGTAAAACTTGACAGTTTTCCCAGCGATTCAAAAGATGGAGAAAATTGTAACATTCTAGTATATGCTTGTCTGGTTGCTCCTTATGACATATATAATGGGTTAAAGGATTTGGAGAGTGGAAATGAGAAAGCGAAGGCTGGCACTGCAGACTATCTTGTACAGATTGAGAACCAAAGAGCAATTAAGGTTTTTGGGAAGAAGACTTACATTGGACTGGCCATTACTTTCTTTGCGGGACTTTGCTTCTCCCTCTTCACACCAGCATTCAACGTGGCCACAAATGATCAGTGGCATACTTTGAAGAAAGGAGTTCCTCATTTGGTTGTCTATACTGCATTTTTCTACTTCTCAGCATCTTGTTTCGTCATTGCTATCATTTTAAACACCATCTTCCTTTACCGCCCTATACTAGACTTACCCAAAAGTTCATTCAAAGCTTACTTGAACGACTGGGAGGGTAGGGGTTGGGCCCTTTTGGCTGGCCTCATATGTGGATTCGGCAACGGTCTCCAATTCATGGGAGGTCAAGCTGCAGGATATGCTGCAGCTGATTCTGTTCAGGCACTTCCACTTGTGAGCACTTTCTGGGGCATACTTCTGTTTGGAGAATACCGAAAATCGTCACGAAGAACATATATATTGCTTACTAGCATGTTGACTATGTTTATTGTTGCTGTTGCTGTCCTCATGGCATCATCGGGGCATCGAAAATGA

Protein Analysis

416

Amino Acids

45.28

Weight (kDa)

8.89

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ureide_permease PF07168 51 - 411 7.5e-191 Ureide permease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 1054
AciI CCGC 4 cut(s) 299, 488, 770, 937
AcoI YGGCCR 2 cut(s) 753, 810
AcsI RAATTY 1 cut(s) 9
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 1 cut(s) 1054
AgsI TTSAA 6 cut(s) 418, 567, 805, 838, 970, 982
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
AluBI AGCT 4 cut(s) 527, 974, 1067, 1085
AluI AGCT 4 cut(s) 527, 974, 1067, 1085
Alw21I GWGCWC 1 cut(s) 1118
Alw26I GTCTC 1 cut(s) 1049
AoxI GGCC 6 cut(s) 101, 133, 753, 810, 1005, 1018
ApaI GGGCCC 1 cut(s) 1009
ApeKI GCWGC 5 cut(s) 73, 524, 1067, 1079, 1082
ApoI RAATTY 1 cut(s) 9
AseI ATTAAT 1 cut(s) 441
Asp700I GAANNNNTTC 2 cut(s) 328, 422
AspS9I GGNCC 2 cut(s) 1005, 1006
AsuHPI GGTGA 2 cut(s) 163, 388
BaeGI GKGCMC 1 cut(s) 1009
BalI TGGCCA 2 cut(s) 755, 812
BanII GRGCYC 1 cut(s) 1009
BarI GAAGNNNNNNTAC 2 cut(s) 725, 757
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 1118
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 5 cut(s) 60, 536, 1054, 1066, 1094
BccI CCATC 2 cut(s) 566, 932
BciT130I CCWGG 1 cut(s) 465
BclI TGATCA 2 cut(s) 378, 820
BcoDI GTCTC 1 cut(s) 1049
BfaI CTAG 4 cut(s) 279, 593, 947, 1185
BfmI CTRYAG 4 cut(s) 60, 681, 1068, 1080
BglI GCCNNNNNGGC 1 cut(s) 1013
BisI GCNGC 5 cut(s) 74, 525, 1068, 1080, 1083
BlsI GCNGC 5 cut(s) 75, 526, 1069, 1081, 1084
Bme1390I CCNGG 1 cut(s) 465
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 1005, 1006
BmiI GGNNCC 1 cut(s) 1007
BmrFI CCNGG 1 cut(s) 465
BmrI ACTGGG 1 cut(s) 997
BmsI GCATC 3 cut(s) 399, 899, 1238
BmuI ACTGGG 1 cut(s) 997
BpiI GAAGAC 1 cut(s) 743
Bpu10I CCTNAGC 2 cut(s) 144, 314
BsaI GGTCTC 1 cut(s) 1049
BsaJI CCNNGG 2 cut(s) 319, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 1054
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 756, 992
Bse3DI GCAATG 2 cut(s) 300, 903
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 2 cut(s) 319, 463
BseLI CCNNNNNNNGG 1 cut(s) 1054
BseMI GCAATG 2 cut(s) 300, 903
BseMII CTCAG 3 cut(s) 158, 305, 900
BseNI ACTGG 2 cut(s) 756, 992
BseSI GKGCMC 1 cut(s) 1009
BseXI GCAGC 5 cut(s) 60, 536, 1054, 1066, 1094
BseYI CCCAGC 1 cut(s) 557
BshFI GGCC 6 cut(s) 103, 135, 755, 812, 1007, 1020
BsiHKAI GWGCWC 1 cut(s) 1118
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 2 cut(s) 109, 786
BslI CCNNNNNNNGG 1 cut(s) 1054
BsmAI GTCTC 1 cut(s) 1049
BsmFI GGGAC 2 cut(s) 109, 786
BsmI GAATGC 1 cut(s) 800
BsnI GGCC 6 cut(s) 103, 135, 755, 812, 1007, 1020
Bso31I GGTCTC 1 cut(s) 1049
Bsp120I GGGCCC 1 cut(s) 1005
Bsp1286I GDGCHC 2 cut(s) 1009, 1118
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 2 cut(s) 378, 820
BspACI CCGC 4 cut(s) 299, 488, 770, 937
BspANI GGCC 6 cut(s) 103, 135, 755, 812, 1007, 1020
BspCNI CTCAG 3 cut(s) 157, 306, 899
BspLI GGNNCC 1 cut(s) 1007
BspMAI CTGCAG 3 cut(s) 685, 1072, 1084
BspTNI GGTCTC 1 cut(s) 1049
BsrDI GCAATG 2 cut(s) 300, 903
BsrFI RCCGGY 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 2 cut(s) 756, 992
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 319, 463
BssMI GATC 2 cut(s) 378, 820
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 5 cut(s) 84, 339, 400, 551, 1043
Bst6I CTCTTC 2 cut(s) 124, 794
BstAPI GCANNNNNTGC 1 cut(s) 1076
BstAUI TGTACA 1 cut(s) 694
BstC8I GCNNGC 9 cut(s) 67, 71, 78, 105, 137, 388, 475, 676, 1018
BstDEI CTNAG 4 cut(s) 144, 314, 427, 886
BstKTI GATC 2 cut(s) 381, 823
BstMAI GTCTC 1 cut(s) 1049
BstMBI GATC 2 cut(s) 378, 820
BstMWI GCNNNNNNNGC 4 cut(s) 145, 680, 1013, 1076
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 3 cut(s) 69, 73, 1192
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 4 cut(s) 60, 681, 1068, 1080
BstSLI GKGCMC 1 cut(s) 1009
BstV1I GCAGC 5 cut(s) 60, 536, 1054, 1066, 1094
BstV2I GAAGAC 1 cut(s) 743
BstXI CCANNNNNNTGG 1 cut(s) 181
BsuRI GGCC 6 cut(s) 103, 135, 755, 812, 1007, 1020
BtsI GCAGTG 2 cut(s) 381, 678
BtsIMutI CAGTG 5 cut(s) 80, 365, 381, 678, 830
Cac8I GCNNGC 9 cut(s) 67, 71, 78, 105, 137, 388, 475, 676, 1018
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 1005, 1006
Csp6I GTAC 1 cut(s) 695
CviAII CATG 6 cut(s) 66, 70, 99, 1054, 1189, 1225
CviQI GTAC 1 cut(s) 695
DdeI CTNAG 4 cut(s) 144, 314, 427, 886
DpnI GATC 2 cut(s) 380, 822
DpnII GATC 2 cut(s) 378, 820
DraI TTTAAA 1 cut(s) 918
DriI GACNNNNNGTC 1 cut(s) 210
EaeI YGGCCR 2 cut(s) 753, 810
Eam1104I CTCTTC 2 cut(s) 124, 794
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 2 cut(s) 124, 794
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 1009
Eco31I GGTCTC 1 cut(s) 1049
EcoO109I RGGNCCY 1 cut(s) 1006
EcoRII CCWGG 1 cut(s) 463
EcoT14I CCWWGG 1 cut(s) 319
EcoT22I ATGCAT 2 cut(s) 71, 346
EcoT38I GRGCYC 1 cut(s) 1009
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 6 cut(s) 69, 73, 102, 1057, 1192, 1228
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 2 cut(s) 109, 786
FatI CATG 6 cut(s) 65, 69, 98, 1053, 1188, 1224
FauI CCCGC 2 cut(s) 292, 763
FauNDI CATATG 1 cut(s) 1025
FbaI TGATCA 2 cut(s) 378, 820
Fnu4HI GCNGC 5 cut(s) 74, 525, 1068, 1080, 1083
FriOI GRGCYC 1 cut(s) 1009
Fsp4HI GCNGC 5 cut(s) 74, 525, 1068, 1080, 1083
FspBI CTAG 4 cut(s) 279, 593, 947, 1185
GluI GCNGC 5 cut(s) 74, 525, 1068, 1080, 1083
GsaI CCCAGC 1 cut(s) 561
HaeIII GGCC 6 cut(s) 103, 135, 755, 812, 1007, 1020
HapII CCGG 1 cut(s) 136
Hin1II CATG 6 cut(s) 69, 73, 102, 1057, 1192, 1228
HincII GTYRAC 1 cut(s) 1194
HindII GTYRAC 1 cut(s) 1194
HindIII AAGCTT 1 cut(s) 972
HinfI GANTC 4 cut(s) 454, 563, 1032, 1088
HpaII CCGG 1 cut(s) 136
HphI GGTGA 2 cut(s) 163, 388
Hpy166II GTNNAC 2 cut(s) 511, 1194
Hpy188I TCNGA 2 cut(s) 195, 216
Hpy188III TCNNGA 4 cut(s) 112, 313, 481, 1161
Hpy8I GTNNAC 2 cut(s) 511, 1194
HpyAV CCTTC 1 cut(s) 664
HpyCH4III ACNGT 5 cut(s) 84, 339, 400, 551, 1043
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 7 cut(s) 69, 344, 386, 683, 872, 1070, 1082
HpyF10VI GCNNNNNNNGC 4 cut(s) 145, 680, 1013, 1076
HpyF3I CTNAG 4 cut(s) 144, 314, 427, 886
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 6 cut(s) 69, 73, 102, 1057, 1192, 1228
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
Ksp22I TGATCA 2 cut(s) 378, 820
Kzo9I GATC 2 cut(s) 378, 820
LmnI GCTCC 1 cut(s) 619
Lsp1109I GCAGC 5 cut(s) 60, 536, 1054, 1066, 1094
LweI GCATC 3 cut(s) 399, 899, 1238
MaeI CTAG 4 cut(s) 279, 593, 947, 1185
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 3 cut(s) 363, 584, 1158
MalI GATC 2 cut(s) 380, 822
MboI GATC 2 cut(s) 378, 820
MboII GAAGA 8 cut(s) 141, 324, 745, 748, 781, 850, 919, 1176
MhlI GDGCHC 2 cut(s) 1009, 1118
MlsI TGGCCA 2 cut(s) 755, 812
MluCI AATT 9 cut(s) 9, 175, 244, 271, 418, 438, 580, 717, 1049
MluNI TGGCCA 2 cut(s) 755, 812
MmeI TCCRAC 1 cut(s) 543
Mox20I TGGCCA 2 cut(s) 755, 812
Mph1103I ATGCAT 2 cut(s) 71, 346
MroNI GCCGGC 1 cut(s) 135
MroXI GAANNNNTTC 2 cut(s) 328, 422
MscI TGGCCA 2 cut(s) 755, 812
MseI TTAA 5 cut(s) 26, 441, 638, 720, 917
Msp20I TGGCCA 2 cut(s) 755, 812
MspA1I CMGCKG 2 cut(s) 527, 1085
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 800
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 4 cut(s) 145, 680, 1013, 1076
NaeI GCCGGC 1 cut(s) 137
NdeI CATATG 1 cut(s) 1025
NdeII GATC 2 cut(s) 378, 820
NgoMIV GCCGGC 1 cut(s) 135
NlaIII CATG 6 cut(s) 69, 73, 102, 1057, 1192, 1228
NlaIV GGNNCC 1 cut(s) 1007
NmeAIII GCCGAG 1 cut(s) 475
NmuCI GTSAC 2 cut(s) 363, 1158
NsiI ATGCAT 2 cut(s) 71, 346
NspI RCATGY 3 cut(s) 69, 73, 1192
PaeI GCATGC 2 cut(s) 69, 73
PctI GAATGC 1 cut(s) 800
PdiI GCCGGC 1 cut(s) 137
PdmI GAANNNNTTC 2 cut(s) 328, 422
PfeI GAWTC 4 cut(s) 454, 563, 1032, 1088
PflMI CCANNNNNTGG 1 cut(s) 1054
PkrI GCNGC 5 cut(s) 75, 526, 1069, 1081, 1084
PshBI ATTAAT 1 cut(s) 441
PsiI TTATAA 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 463
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 1 cut(s) 1007
PspOMI GGGCCC 1 cut(s) 1005
PspPI GGNCC 2 cut(s) 1005, 1006
PstI CTGCAG 3 cut(s) 685, 1072, 1084
PvuII CAGCTG 2 cut(s) 527, 1085
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
SaqAI TTAA 5 cut(s) 26, 441, 638, 720, 917
SatI GCNGC 5 cut(s) 74, 525, 1068, 1080, 1083
Sau3AI GATC 2 cut(s) 378, 820
Sau96I GGNCC 2 cut(s) 1005, 1006
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 2 cut(s) 1009, 1118
SfaNI GCATC 3 cut(s) 399, 899, 1238
SfcI CTRYAG 4 cut(s) 60, 681, 1068, 1080
SphI GCATGC 2 cut(s) 69, 73
Sse9I AATT 9 cut(s) 9, 175, 244, 271, 418, 438, 580, 717, 1049
SsiI CCGC 4 cut(s) 299, 488, 770, 937
SspMI CTAG 4 cut(s) 279, 593, 947, 1185
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 5 cut(s) 84, 339, 400, 551, 1043
TaiI ACGT 1 cut(s) 810
TaqI TCGA 3 cut(s) 16, 123, 1243
TasI AATT 9 cut(s) 9, 175, 244, 271, 418, 438, 580, 717, 1049
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 4 cut(s) 454, 563, 1032, 1088
Tru1I TTAA 5 cut(s) 26, 441, 638, 720, 917
Tru9I TTAA 5 cut(s) 26, 441, 638, 720, 917
TscAI CASTG 5 cut(s) 87, 372, 388, 685, 830
TseFI GTSAC 2 cut(s) 363, 1158
TseI GCWGC 5 cut(s) 73, 524, 1067, 1079, 1082
Tsp45I GTSAC 2 cut(s) 363, 1158
TspDTI ATGAA 2 cut(s) 954, 1042
TspRI CASTG 5 cut(s) 87, 372, 388, 685, 830
Van91I CCANNNNNTGG 1 cut(s) 1054
VspI ATTAAT 1 cut(s) 441
XapI RAATTY 1 cut(s) 9
XceI RCATGY 3 cut(s) 69, 73, 1192
XmnI GAANNNNTTC 2 cut(s) 328, 422
XspI CTAG 4 cut(s) 279, 593, 947, 1185
Zsp2I ATGCAT 2 cut(s) 71, 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.