Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001090

Physical Location & Seq

Genomic Coordinates Forward (+)

1096984 .. 1098826

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTATGTGATAGAGAGCAAAGGAGGAACAATCACTTGTATGCTCTTGGCTCTGCTCTTCTTAGGGACATGGCCAGCAATCATGACTCTAACCGAAAGACGCGGTAGACTTCCTCAACATACTTATCTTGACTACACACTGACAAACCTGTTAGCTGCAGTTATCATAGCGTTTACACTAGGCGAAATAAGTCCAAGCAGACCAAATTTCACCACACAGCTTTCTCAAGATAATTGGCCGTCTGTGATGTTTGCAATGGCTGGAGGAATATTTCTTAGCCTTGGGACCTTAGCAACACAATATGCTTGGGCTTTTGTTGGGTTATCTGTCACTGAAGTCATCACAGCTAGTATCGCCGTTGTTATCGGCACAACTTTGAACTATTTCTTGGATGATAGAATCAACAGAGCTGAGGTCCTTTTCCCGGGGGTCGCTTGTTTCTTGATCGCTGTTTGTTTCGGTTCTGCTGTTCATAAATCAAATGCAGCTGATAACAAATCCAAACTCCAAGGATTCAAAAGTTTAGAGACTACTTCTTCCTTCCAAATGGAAACAAGTTCTATAAAAGAAGGAAAAGCAAAAGTAGGGACTGCAGATTTTCTTATTGAGGTTGAGAAACAAAGAGCCATAAAGGTTTTTGGGAAAAGCACAATAATTGGACTGGCGATAACATTCTTTGCCGGTATCTGTTTCTCTCTAATCTCACCTGCAGTAAGCTTAGCGACAAACGATCAATGGCACACTTTGAAACATGGAGTTGGCACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005274 GO:0005350 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006855 GO:0008150 GO:0008152 GO:0008324 GO:0008655 GO:0009058 GO:0009112 GO:0009987 GO:0015075 GO:0015077 GO:0015078 GO:0015205 GO:0015210 GO:0015238 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015720 GO:0015851 GO:0015855 GO:0015857 GO:0015893 GO:0018130 GO:0019438 GO:0019856 GO:0022804 GO:0022857 GO:0022890 GO:0034220 GO:0034641 GO:0034654 GO:0042221 GO:0042493 GO:0042886 GO:0042887 GO:0043094 GO:0043100 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046112 GO:0046483 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0072527 GO:0072528 GO:0072531 GO:0098655 GO:0098660 GO:0098662 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1903791 GO:1904082

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ureide_permease

Protein Analysis

256

Amino Acids

27.69

Weight (kDa)

8.33

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 255	3.5e-101	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001090)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT1G26440 AT2G03520 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03530 AT2G03590 AT2G03590 AT2G03600 AT2G03600 AT2G03600 AT2G03600
fragaria_vesca	FvH4_4g30100 FvH4_4g30100 FvH4_4g30101 FvH4_4g30101 FvH4_4g30101 FvH4_4g30102
malus_domestica	MD16G1061500.v1.1
prunus_persica	Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1 Prupe.1G286600_v2.0.a1
pyrus_communis	pycom16g05370
rosa_chinensis	RchiOBHm_Chr4g0438401 RchiOBHm_Chr4g0438411 RchiOBHm_Chr4g0438431
rosa_laevigata	RLG00000006366 RLG00000006367
rosa_multiflora	Rmu_co8316253.1_g000001 Rmu_sc0002327.1_g000024 Rmu_sc0002327.1_g000025 Rmu_sc0019260.1_g000004 Rmu_sc0021561.1_g000001
rosa_roxburghii	Rroxscaffold_5G00379430 Rroxscaffold_5G00379440
rosa_rugosa	Rorug04G0309700 Rorug04G0309800
rosa_samantha	Rh4AG360500 Rh4BG371400 Rh4BG371500 Rh4CG385500 Rh4CG385600 Rh4DG366400 Rh4DG366500 Rh4DG366600
rosa_wichuraiana	Rw0G006510 Rw0G006520 Rw0G006530 Rw0G016460 Rw0G016470 Rw0G016480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	715
Acc36I	ACCTGC	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	106
AccII	CGCG	1 cut(s)	102
AciI	CCGC	1 cut(s)	102
AcoI	YGGCCR	2 cut(s)	71, 236
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	379, 517, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	6 cut(s)	155, 220, 347, 410, 488, 717
AluI	AGCT	6 cut(s)	155, 220, 347, 410, 488, 717
Alw26I	GTCTC	1 cut(s)	521
Ama87I	CYCGRG	1 cut(s)	424
AoxI	GGCC	2 cut(s)	71, 236
ApeKI	GCWGC	2 cut(s)	155, 485
ApoI	RAATTY	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	285, 415
AsuC2I	CCSGG	2 cut(s)	425, 426
AsuHPI	GGTGA	2 cut(s)	202, 696
AvaI	CYCGRG	1 cut(s)	424
AvaII	GGWCC	2 cut(s)	285, 415
BalI	TGGCCA	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	142, 497
BceAI	ACGGC	2 cut(s)	223, 341
BcnI	CCSGG	2 cut(s)	425, 426
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	2 cut(s)	179, 348
BfmI	CTRYAG	3 cut(s)	156, 591, 708
BfuAI	ACCTGC	1 cut(s)	715
BisI	GCNGC	2 cut(s)	156, 486
BlpI	GCTNAGC	1 cut(s)	718
BlsI	GCNGC	2 cut(s)	157, 487
Bme1390I	CCNGG	2 cut(s)	425, 426
Bme18I	GGWCC	2 cut(s)	285, 415
BmeT110I	CYCGRG	1 cut(s)	424
BmgT120I	GGNCC	2 cut(s)	285, 415
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	425, 426
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	2 cut(s)	289, 411
Bpu1102I	GCTNAGC	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	425, 426
BsaJI	CCNNGG	4 cut(s)	280, 424, 425, 508
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	680
Bse1I	ACTGG	1 cut(s)	666
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	280, 424, 425, 508
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	1 cut(s)	666
BseXI	GCAGC	2 cut(s)	142, 497
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	2 cut(s)	73, 238
BsiHKCI	CYCGRG	1 cut(s)	424
BsiSI	CCGG	2 cut(s)	425, 681
BslFI	GGGAC	3 cut(s)	79, 298, 601
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	3 cut(s)	79, 298, 601
BsnI	GGCC	2 cut(s)	73, 238
BsoBI	CYCGRG	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	444, 730
Bsp1720I	GCTNAGC	1 cut(s)	718
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	73, 238
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	3 cut(s)	160, 595, 712
BspMI	ACCTGC	1 cut(s)	715
BspQI	GCTCTTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	261
BsrFI	RCCGGY	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	666
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	4 cut(s)	280, 424, 425, 508
BssMI	GATC	2 cut(s)	444, 730
BssT1I	CCWWGG	2 cut(s)	280, 508
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	5 cut(s)	61, 275, 289, 411, 718
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	447, 733
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	444, 730
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	423, 424
BstSFI	CTRYAG	3 cut(s)	156, 591, 708
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	142, 497
BsuRI	GGCC	2 cut(s)	73, 238
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	137, 330
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	2 cut(s)	285, 415
Cfr9I	CCCGGG	1 cut(s)	424
CseI	GACGC	1 cut(s)	108
CviAII	CATG	3 cut(s)	69, 82, 752
DdeI	CTNAG	5 cut(s)	61, 275, 289, 411, 718
DpnI	GATC	2 cut(s)	446, 732
DpnII	GATC	2 cut(s)	444, 730
EaeI	YGGCCR	2 cut(s)	71, 236
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	280, 508
Eco47I	GGWCC	2 cut(s)	285, 415
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	1 cut(s)	424
EcoO109I	RGGNCCY	2 cut(s)	285, 415
EcoT14I	CCWWGG	2 cut(s)	280, 508
ErhI	CCWWGG	2 cut(s)	280, 508
FaeI	CATG	3 cut(s)	72, 85, 755
FaqI	GGGAC	3 cut(s)	79, 298, 601
FatI	CATG	3 cut(s)	68, 81, 751
FblI	GTMKAC	1 cut(s)	106
Fnu4HI	GCNGC	2 cut(s)	156, 486
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	156, 486
FspBI	CTAG	2 cut(s)	179, 348
GluI	GCNGC	2 cut(s)	156, 486
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	73, 238
HapII	CCGG	2 cut(s)	425, 681
HgaI	GACGC	1 cut(s)	108
Hin1II	CATG	3 cut(s)	72, 85, 755
HindIII	AAGCTT	1 cut(s)	715
HinfI	GANTC	3 cut(s)	85, 399, 513
HpaII	CCGG	2 cut(s)	425, 681
HphI	GGTGA	2 cut(s)	202, 696
Hpy166II	GTNNAC	2 cut(s)	107, 174
Hpy188III	TCNNGA	4 cut(s)	82, 128, 227, 442
Hpy8I	GTNNAC	2 cut(s)	107, 174
HpyAV	CCTTC	2 cut(s)	550, 563
HpyCH4V	TGCA	5 cut(s)	158, 254, 485, 593, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	5 cut(s)	61, 275, 289, 411, 718
Hsp92II	CATG	3 cut(s)	72, 85, 755
Kzo9I	GATC	2 cut(s)	444, 730
LguI	GCTCTTC	1 cut(s)	62
LpnPI	CCDG	7 cut(s)	87, 161, 246, 438, 647, 694, 720
Lsp1109I	GCAGC	2 cut(s)	142, 497
MaeI	CTAG	2 cut(s)	179, 348
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	2 cut(s)	446, 732
MboI	GATC	2 cut(s)	444, 730
MboII	GAAGA	2 cut(s)	49, 528
MlsI	TGGCCA	1 cut(s)	73
MluCI	AATT	3 cut(s)	205, 232, 654
MluNI	TGGCCA	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	17, 123, 257, 406, 601
Mox20I	TGGCCA	1 cut(s)	73
MroXI	GAANNNNTTC	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	73
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	73
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	425, 681
MspR9I	CCNGG	2 cut(s)	425, 426
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	2 cut(s)	425, 426
NdeII	GATC	2 cut(s)	444, 730
NlaIII	CATG	3 cut(s)	72, 85, 755
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	328
PagI	TCATGA	1 cut(s)	81
PaqCI	CACCTGC	1 cut(s)	715
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	2 cut(s)	399, 513
PkrI	GCNGC	2 cut(s)	157, 487
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PpuMI	RGGWCCY	2 cut(s)	285, 415
Psp5II	RGGWCCY	2 cut(s)	285, 415
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	2 cut(s)	285, 415
PspPPI	RGGWCCY	2 cut(s)	285, 415
PstI	CTGCAG	3 cut(s)	160, 595, 712
PvuII	CAGCTG	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	38
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	156, 486
Sau3AI	GATC	2 cut(s)	444, 730
Sau96I	GGNCC	2 cut(s)	285, 415
SchI	GAGTC	1 cut(s)	79
ScrFI	CCNGG	2 cut(s)	425, 426
SfcI	CTRYAG	3 cut(s)	156, 591, 708
SinI	GGWCC	2 cut(s)	285, 415
SmaI	CCCGGG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	205, 232, 654
SsiI	CCGC	1 cut(s)	102
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	2 cut(s)	179, 348
StyD4I	CCNGG	2 cut(s)	423, 424
StyI	CCWWGG	2 cut(s)	280, 508
TasI	AATT	3 cut(s)	205, 232, 654
TfiI	GAWTC	2 cut(s)	399, 513
TscAI	CASTG	2 cut(s)	144, 337
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	155, 485
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	461
TspMI	CCCGGG	1 cut(s)	424
TspRI	CASTG	2 cut(s)	144, 337
VpaK11BI	GGWCC	2 cut(s)	285, 415
XapI	RAATTY	1 cut(s)	205
XmaI	CCCGGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	2 cut(s)	179, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.