Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

9972185 .. 9973942

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTTTCTCCACTAGAGGCTCCCTCTTATTCTTCTTCACTACACTTGTTCTTCTCTCCACCCAAATCCATGCAAGAGACAGTTACTTCTTTGGAAAATTCCACAGAGAATCCCCCAAAGATCAAAACCCTAACAGTTTCATCCCTCTTGAGACTAGCGAGAAAACCACAGTAGAAGAATCCGTCCTCAACAAGAAAGAGCAAGAACAAGATCCTACCTTTGTCCCCGAGTCCGGAAACGGGTATGGCTTGTATGGTCACGAGACCACATACAACAACAACAACGACAACAAAGAAGAGTTCAACAACAACAACAAGAACGATGAAAAAGTCAACAGCAAGACTTTCTCCACTCCAAGCCTGAGCGAGACCGAAGAGTCTTTCAACAACTACGAGGAAAATTACCCGAAGAAGACAGAGAACTACGGCACTAAAGGTTATAACAATGAGGAGTTCAACAACAACAACAACAAGTACGATGCAAACTTCAAGGAAGAGTTCAACAACAACAAGTACGATGAAAATTACGCCAAGGAAGAGTTCAACAACAACAACAACAACAACAACTACAACTACAAGTACGATGAAAACGTTAAGGAAGAGTCTTTCCCCGAGAACAATGAAGACAACAAGAAAAACGTCTACAACTCTAACGCTTACGGGACAGAGTTAGAACGTGAAACACCGTACAAAGGTTACAGCCACAACTTGGAGAGACAAGGCATGAGTGACACAAGGTTCATGGAGAAAGGTAGCTACTACTACGACCTTTACAACGACAGAAACCACGGCCATTACTACCGGAAGTCACACAGTAAAAGCCCCGCCGGTTACTATTCTTCTCCCGCGACCGAGACTAACTACGAACAGCAATCGTACTCGTACGGAAACAACAACGAGGAGAACAGTTTTAAGGATCCGTACAACTCCAAGTGGGAGAAGAACTTGATGAACGAACAGCCTGAAGAGTTTGTTGAGGAGCAAGGCACTAATCAGTTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

335

Amino Acids

39.65

Weight (kDa)

4.82

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AasI	GACNNNNNNGTC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	709
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	848
AccIII	TCCGGA	1 cut(s)	233
AciI	CCGC	2 cut(s)	825, 846
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	3 cut(s)	206, 911, 924
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	984
AfaI	GTAC	7 cut(s)	476, 515, 581, 689, 878, 884, 923
AfiI	CCNNNNNNNGG	4 cut(s)	233, 240, 692, 709
AgsI	TTSAA	7 cut(s)	304, 385, 457, 490, 502, 544, 1000
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	1 cut(s)	756
AluI	AGCT	1 cut(s)	756
Alw26I	GTCTC	6 cut(s)	72, 146, 257, 362, 709, 848
AlwI	GGATC	3 cut(s)	206, 911, 924
Ama87I	CYCGRG	2 cut(s)	227, 611
Aor13HI	TCCGGA	1 cut(s)	233
AoxI	GGCC	1 cut(s)	790
ApoI	RAATTY	1 cut(s)	98
AvaI	CYCGRG	2 cut(s)	227, 611
BamHI	GGATCC	1 cut(s)	916
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	419, 630
BceAI	ACGGC	2 cut(s)	442, 805
BcoDI	GTCTC	6 cut(s)	72, 146, 257, 362, 709, 848
BfaI	CTAG	2 cut(s)	15, 156
BmeT110I	CYCGRG	2 cut(s)	227, 611
BmiI	GGNNCC	2 cut(s)	22, 918
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	419, 630
BplI	GAGNNNNNCTC	2 cut(s)	9, 41
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	257, 362
BsaJI	CCNNGG	2 cut(s)	531, 787
BsaWI	WCCGGW	2 cut(s)	233, 801
Bsc4I	CCNNNNNNNGG	4 cut(s)	233, 240, 692, 709
Bse118I	RCCGGY	1 cut(s)	827
BseAI	TCCGGA	1 cut(s)	233
BseDI	CCNNGG	2 cut(s)	531, 787
BseGI	GGATG	1 cut(s)	141
BseLI	CCNNNNNNNGG	4 cut(s)	233, 240, 692, 709
BseMII	CTCAG	1 cut(s)	353
BseRI	GAGGAG	3 cut(s)	464, 914, 992
Bsh1236I	CGCG	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	792
BsiEI	CGRYCG	1 cut(s)	852
BsiHKCI	CYCGRG	2 cut(s)	227, 611
BsiSI	CCGG	3 cut(s)	234, 802, 828
BsiWI	CGTACG	1 cut(s)	882
BslFI	GGGAC	2 cut(s)	209, 676
BslI	CCNNNNNNNGG	4 cut(s)	233, 240, 692, 709
BsmAI	GTCTC	6 cut(s)	72, 146, 257, 362, 709, 848
BsmFI	GGGAC	2 cut(s)	209, 676
BsnI	GGCC	1 cut(s)	792
Bso31I	GGTCTC	2 cut(s)	257, 362
BsoBI	CYCGRG	2 cut(s)	227, 611
Bsp13I	TCCGGA	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	121, 211, 916
BspACI	CCGC	2 cut(s)	825, 846
BspANI	GGCC	1 cut(s)	792
BspCNI	CTCAG	1 cut(s)	354
BspEI	TCCGGA	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	848
BspLI	GGNNCC	2 cut(s)	22, 918
BspPI	GGATC	3 cut(s)	206, 911, 924
BspTNI	GGTCTC	2 cut(s)	257, 362
BsrFI	RCCGGY	1 cut(s)	827
BssAI	RCCGGY	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	531, 787
BssMI	GATC	3 cut(s)	121, 211, 916
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	260
Bst4CI	ACNGT	6 cut(s)	83, 137, 172, 687, 815, 908
Bst6I	CTCTTC	6 cut(s)	291, 369, 489, 531, 594, 960
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	787
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	848
BstKTI	GATC	3 cut(s)	124, 214, 919
BstMAI	GTCTC	6 cut(s)	72, 146, 257, 362, 709, 848
BstMBI	GATC	3 cut(s)	121, 211, 916
BstMCI	CGRYCG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	848
BstV2I	GAAGAC	2 cut(s)	419, 630
BstX2I	RGATCY	2 cut(s)	211, 916
BstYI	RGATCY	2 cut(s)	211, 916
BsuRI	GGCC	1 cut(s)	792
BtgI	CCRYGG	1 cut(s)	787
BtsCI	GGATG	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	827
Csp6I	GTAC	7 cut(s)	475, 514, 580, 688, 877, 883, 922
CviAII	CATG	3 cut(s)	71, 724, 742
CviQI	GTAC	7 cut(s)	475, 514, 580, 688, 877, 883, 922
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	3 cut(s)	123, 213, 918
DpnII	GATC	3 cut(s)	121, 211, 916
DrdI	GACNNNNNNGTC	1 cut(s)	376
DseDI	GACNNNNNNGTC	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	6 cut(s)	291, 369, 489, 531, 594, 960
EarI	CTCTTC	6 cut(s)	291, 369, 489, 531, 594, 960
Eco130I	CCWWGG	1 cut(s)	531
Eco31I	GGTCTC	2 cut(s)	257, 362
Eco57I	CTGAAG	1 cut(s)	984
Eco88I	CYCGRG	2 cut(s)	227, 611
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	3 cut(s)	74, 727, 745
FaiI	YATR	7 cut(s)	72, 246, 255, 271, 441, 725, 743
FaqI	GGGAC	2 cut(s)	209, 676
FatI	CATG	3 cut(s)	70, 723, 741
FauI	CCCGC	2 cut(s)	832, 853
FblI	GTMKAC	1 cut(s)	642
FokI	GGATG	1 cut(s)	128
FspBI	CTAG	2 cut(s)	15, 156
HaeIII	GGCC	1 cut(s)	792
HapII	CCGG	3 cut(s)	234, 802, 828
Hin1II	CATG	3 cut(s)	74, 727, 745
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	5 cut(s)	110, 179, 230, 377, 602
HpaII	CCGG	3 cut(s)	234, 802, 828
Hpy166II	GTNNAC	2 cut(s)	334, 643
Hpy188III	TCNNGA	3 cut(s)	149, 234, 260
Hpy8I	GTNNAC	2 cut(s)	334, 643
HpyCH4III	ACNGT	6 cut(s)	83, 137, 172, 687, 815, 908
HpyCH4IV	ACGT	3 cut(s)	591, 639, 676
HpyCH4V	TGCA	2 cut(s)	74, 482
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	3 cut(s)	591, 639, 676
Hsp92II	CATG	3 cut(s)	74, 727, 745
Kpn2I	TCCGGA	1 cut(s)	233
Kzo9I	GATC	3 cut(s)	121, 211, 916
LmnI	GCTCC	2 cut(s)	26, 979
LpnPI	CCDG	5 cut(s)	247, 374, 815, 841, 975
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	15, 156
MaeII	ACGT	3 cut(s)	591, 639, 676
MaeIII	GTNAC	6 cut(s)	83, 257, 695, 728, 807, 830
MalI	GATC	3 cut(s)	123, 213, 918
MboI	GATC	3 cut(s)	121, 211, 916
MflI	RGATCY	2 cut(s)	211, 916
MluCI	AATT	3 cut(s)	98, 400, 523
MlyI	GAGTC	3 cut(s)	239, 386, 611
MnlI	CCTC	8 cut(s)	11, 35, 156, 197, 388, 442, 892, 970
MroI	TCCGGA	1 cut(s)	233
MseI	TTAA	2 cut(s)	594, 912
MspI	CCGG	3 cut(s)	234, 802, 828
MvnI	CGCG	1 cut(s)	848
NdeII	GATC	3 cut(s)	121, 211, 916
NlaIII	CATG	3 cut(s)	74, 727, 745
NlaIV	GGNNCC	2 cut(s)	22, 918
NmuCI	GTSAC	3 cut(s)	257, 728, 807
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PfeI	GAWTC	2 cut(s)	110, 179
Pfl23II	CGTACG	1 cut(s)	882
PflMI	CCANNNNNTGG	1 cut(s)	709
PleI	GAGTC	3 cut(s)	238, 385, 610
PpsI	GAGTC	3 cut(s)	238, 385, 610
PsiI	TTATAA	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	591
PspLI	CGTACG	1 cut(s)	882
PspN4I	GGNNCC	2 cut(s)	22, 918
PsuI	RGATCY	2 cut(s)	211, 916
RsaI	GTAC	7 cut(s)	476, 515, 581, 689, 878, 884, 923
RsaNI	GTAC	7 cut(s)	475, 514, 580, 688, 877, 883, 922
SaqAI	TTAA	2 cut(s)	594, 912
Sau3AI	GATC	3 cut(s)	121, 211, 916
SchI	GAGTC	3 cut(s)	239, 386, 611
SfaNI	GCATC	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	98, 400, 523
SsiI	CCGC	2 cut(s)	825, 846
SspMI	CTAG	2 cut(s)	15, 156
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	6 cut(s)	83, 137, 172, 687, 815, 908
TaiI	ACGT	3 cut(s)	594, 642, 679
TaqII	GACCGA	2 cut(s)	386, 866
TasI	AATT	3 cut(s)	98, 400, 523
TfiI	GAWTC	2 cut(s)	110, 179
Tru1I	TTAA	2 cut(s)	594, 912
Tru9I	TTAA	2 cut(s)	594, 912
TseFI	GTSAC	3 cut(s)	257, 728, 807
Tsp45I	GTSAC	3 cut(s)	257, 728, 807
TspDTI	ATGAA	7 cut(s)	130, 339, 534, 600, 636, 730, 965
TspGWI	ACGGA	3 cut(s)	172, 900, 909
Van91I	CCANNNNNTGG	1 cut(s)	709
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	2 cut(s)	15, 156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.