Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

5949461 .. 5951315

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG070600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTCACCACTAACCCTCTCCACACTATTATACACTACTCCAAAGTCCAAAGCAAGAGCACCCTCTTTCTTCACTTGCCGTCATCCATGGCTCCTAGTGCGAAATTGCTCTCTTTCTTCTTCGTGCTATCTCTCCTCTTCTCTCAACAGGTTCAAGCTCGAAGTGTCTTCTTCAGCAAAGTAGCCAATGTGGACAACCACAACACTGAAGAGCTCCCCAACAAGGAGAGCACTGTTGTGACCAAGCAAGAGCAACAGCCAAACTTCATCCCGCAAACCCAAAACGGCTATGGTCTCTACGGCCACGAGTCCACCGAGCTGCCTCCCTCTACCAAGACCACAGCCACAACCAACGCTGTACCATACTCCACCACCCCCACCAACAGTGAACATTACACTACCACCACCACCAACGGTGAACCATACACCACCACCACAAGAACTACCTCCAACGACGACAACAACAACATTCCATACACACACTACAATCCCAACAAGAACAGCAACTACTATAACAACAACTACGAGACCAACCAAAACGGGATGAGTGACACAAGGTTGACGCAGCAGAAAGGCTACACCACCCCAACCACCCAAAACAGCAACGGCAACAACTACTACAATGTTGAGAGGCAAGGCATGAGCGACACAAGGTTTACGCAGCAGAGAGGCTACACCACTCCCACCACCACCACCCCAACCACCCAAAACAGCAACAACTACTACAACGTTGAGAGGCAAGGCATGAGCGACACAAGGTTCTTGGAGAATGGTAAGTACCACTACGACATTAACAGCGAGAACAACTACAATCAGAACCAGTACAAGAATTCCCAGGTGGTCGATTCAAGAAACTGGTACAACAACAACAATAACAACAACCGGGGTTACTATGGCAGCAACAATGGGAACCGGAACACCTTTGAGTCCAGCGACGTGTACCAGAACGAGGAGTTCCAAGAGAACGAAGATGACCAGTTCGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.83

Weight (kDa)

5.61

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AclI	AACGTT	1 cut(s)	729
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	2 cut(s)	157, 228
AfaI	GTAC	5 cut(s)	360, 779, 824, 860, 941
AfiI	CCNNNNNNNGG	2 cut(s)	223, 949
AflIII	ACRYGT	1 cut(s)	936
AgsI	TTSAA	2 cut(s)	155, 849
AjiI	CACGTC	1 cut(s)	937
AjnI	CCWGG	1 cut(s)	834
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	158, 214, 319
AluI	AGCT	3 cut(s)	158, 214, 319
Alw21I	GWGCWC	3 cut(s)	62, 216, 233
Alw26I	GTCTC	2 cut(s)	299, 521
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	4 cut(s)	319, 565, 661, 897
ApoI	RAATTY	1 cut(s)	829
AsuC2I	CCSGG	1 cut(s)	884
AsuHPI	GGTGA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	3 cut(s)	62, 216, 233
BbvI	GCAGC	4 cut(s)	306, 577, 673, 909
BceAI	ACGGC	4 cut(s)	64, 301, 316, 622
BciT130I	CCWGG	1 cut(s)	836
BcnI	CCSGG	1 cut(s)	884
BcoDI	GTCTC	2 cut(s)	299, 521
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	4 cut(s)	320, 566, 662, 898
BlsI	GCNGC	4 cut(s)	321, 567, 663, 899
Bme1390I	CCNGG	2 cut(s)	836, 884
BmgBI	CACGTC	1 cut(s)	937
BmiI	GGNNCC	2 cut(s)	93, 911
BmrFI	CCNGG	2 cut(s)	836, 884
BpiI	GAAGAC	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	884
BsaI	GGTCTC	2 cut(s)	299, 521
BsaJI	CCNNGG	3 cut(s)	87, 834, 883
BsaWI	WCCGGW	1 cut(s)	912
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 949
Bse1I	ACTGG	3 cut(s)	820, 860, 976
BseBI	CCWGG	1 cut(s)	836
BseDI	CCNNGG	3 cut(s)	87, 834, 883
BseGI	GGATG	3 cut(s)	83, 267, 549
BseLI	CCNNNNNNNGG	2 cut(s)	223, 949
BseNI	ACTGG	3 cut(s)	820, 860, 976
BseRI	GAGGAG	2 cut(s)	125, 965
BseXI	GCAGC	4 cut(s)	306, 577, 673, 909
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	3 cut(s)	62, 216, 233
BsiSI	CCGG	2 cut(s)	883, 913
BslI	CCNNNNNNNGG	2 cut(s)	223, 949
BsmAI	GTCTC	2 cut(s)	299, 521
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	2 cut(s)	299, 521
Bsp1286I	GDGCHC	3 cut(s)	62, 216, 233
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	93, 911
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	2 cut(s)	299, 521
BsrI	ACTGG	3 cut(s)	820, 860, 976
BssECI	CCNNGG	3 cut(s)	87, 834, 883
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	836
Bst4CI	ACNGT	3 cut(s)	235, 386, 416
Bst6I	CTCTTC	2 cut(s)	143, 204
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	83, 267, 549
BstMAI	GTCTC	2 cut(s)	299, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	836
BstSCI	CCNGG	2 cut(s)	834, 882
BstV1I	GCAGC	4 cut(s)	306, 577, 673, 909
BstV2I	GAAGAC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	937
BtsCI	GGATG	3 cut(s)	83, 267, 549
BtsIMutI	CAGTG	3 cut(s)	204, 231, 391
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	5 cut(s)	359, 778, 823, 859, 940
CviAII	CATG	4 cut(s)	88, 640, 745, 987
CviQI	GTAC	5 cut(s)	359, 778, 823, 859, 940
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	143, 204
EarI	CTCTTC	2 cut(s)	143, 204
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	299, 521
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	157, 228
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	1 cut(s)	834
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	4 cut(s)	91, 643, 748, 990
FatI	CATG	4 cut(s)	87, 639, 744, 986
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	320, 566, 662, 898
FokI	GGATG	3 cut(s)	70, 254, 556
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	320, 566, 662, 898
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	4 cut(s)	320, 566, 662, 898
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	2 cut(s)	883, 913
HgaI	GACGC	1 cut(s)	571
Hin1II	CATG	4 cut(s)	91, 643, 748, 990
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	3 cut(s)	308, 845, 926
HpaII	CCGG	2 cut(s)	883, 913
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	8 cut(s)	6, 193, 312, 389, 419, 561, 657, 940
Hpy188I	TCNGA	1 cut(s)	816
Hpy188III	TCNNGA	1 cut(s)	849
Hpy8I	GTNNAC	8 cut(s)	6, 193, 312, 389, 419, 561, 657, 940
Hpy99I	CGWCG	2 cut(s)	458, 938
HpyCH4III	ACNGT	3 cut(s)	235, 386, 416
HpyCH4IV	ACGT	2 cut(s)	729, 936
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	2 cut(s)	729, 936
Hsp92II	CATG	4 cut(s)	91, 643, 748, 990
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	97, 219
LpnPI	CCDG	9 cut(s)	134, 821, 833, 841, 848, 896, 926, 943, 956
Lsp1109I	GCAGC	4 cut(s)	306, 577, 673, 909
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	2 cut(s)	729, 936
MaeIII	GTNAC	3 cut(s)	238, 548, 887
MboII	GAAGA	8 cut(s)	62, 109, 112, 130, 160, 163, 221, 980
MhlI	GDGCHC	3 cut(s)	62, 216, 233
MluCI	AATT	2 cut(s)	104, 829
MlyI	GAGTC	2 cut(s)	317, 935
MmeI	TCCRAC	1 cut(s)	474
MseI	TTAA	1 cut(s)	792
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	2 cut(s)	883, 913
MspR9I	CCNGG	2 cut(s)	836, 884
MvaI	CCWGG	1 cut(s)	836
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	884
NcoI	CCATGG	1 cut(s)	87
NlaIII	CATG	4 cut(s)	91, 643, 748, 990
NlaIV	GGNNCC	2 cut(s)	93, 911
NmuCI	GTSAC	2 cut(s)	238, 548
OliI	CACNNNNGTG	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	845
PkrI	GCNGC	4 cut(s)	321, 567, 663, 899
PleI	GAGTC	2 cut(s)	316, 934
PpsI	GAGTC	2 cut(s)	316, 934
Psp124BI	GAGCTC	1 cut(s)	216
Psp1406I	AACGTT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	834
PspGI	CCWGG	1 cut(s)	834
PspN4I	GGNNCC	2 cut(s)	93, 911
PsrI	GAACNNNNNNTAC	2 cut(s)	491, 523
RsaI	GTAC	5 cut(s)	360, 779, 824, 860, 941
RsaNI	GTAC	5 cut(s)	359, 778, 823, 859, 940
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	792
SatI	GCNGC	4 cut(s)	320, 566, 662, 898
SchI	GAGTC	2 cut(s)	317, 935
ScrFI	CCNGG	2 cut(s)	836, 884
SduI	GDGCHC	3 cut(s)	62, 216, 233
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	104, 829
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	834, 882
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	235, 386, 416
TaiI	ACGT	2 cut(s)	732, 939
TaqI	TCGA	2 cut(s)	160, 843
TasI	AATT	2 cut(s)	104, 829
TatI	WGTACW	1 cut(s)	822
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	1 cut(s)	792
Tru9I	TTAA	1 cut(s)	792
TscAI	CASTG	3 cut(s)	211, 238, 391
TseFI	GTSAC	2 cut(s)	238, 548
TseI	GCWGC	4 cut(s)	319, 565, 661, 897
Tsp45I	GTSAC	2 cut(s)	238, 548
TspDTI	ATGAA	1 cut(s)	256
TspRI	CASTG	3 cut(s)	211, 238, 391
XapI	RAATTY	1 cut(s)	829
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.