Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

6899352 .. 6900266

Gene Structure 915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031630

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCTCCTAATGTGAAATTGCTCTCTTTCTTCTTCTTGCTATCTCTCCTCTTCTCTCAACAGGTTCAAGCTCGAAGTGTCTTCTTCAGCAAAGTAGCCAATGTGGACAACCACAACACTGAAGAGCTCCCCAACAAGGAGAGCACTGTTGTGACCAAGCAAGAGCAACAGCCAAACTTCATCCCCCAAACCCAAAACGGCTATGGTCTCTACGGCCACGAGTCCACCGAGCTGCCTCCCTCTACCAAGACCACAACCACAACCACAACCAACGCTGTACCATACTCCACCACCCCCACCAACAGTGAACATTACACCACCACCGCCACCAACGGTGAACCATACTCCACCACCACAAGAACTACCTCCAACGACAACAACAACAACATTCCATACACACACTACAATCCCAACAAGAACAGCAACTACTACAACAACAACTACGAGACCAACCAAAAAGGGCTGAGTGACACAAGGCTTACGCAGCAGAAAAGCTACACCACCCCAACCACCCAAAACAGCAACAGCAACAACTACTACAATGTTGAGAAGCAAGGCATGAGCGACACAAGGTTTACGCAGCAGAGAGGCTACACCACTCCCACCACCACCACCCCAACCACCCAAAACAGCAACAGCAACAACTACTACAACGTTGAGAGGCAAGGCATGAGCGACACAAGGTTCTTGGAGAATGGTAAGTACTACTACGACCCAAACAGCGAGAACAACTACAATCAGAACCAGTACAAGAATTCCCAGGCGCTCGATCCAAGAAACTGGTACAACAACAACAATAACAACAACCGGGGTTACTATGGCAGCAACAATGGGAACCGGAACACCTTTGAGTCCAGCGACGTGTACCAGAACGAGGAGTTCCAAGAGAACGAAGATGACCAGTTCGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

35.01

Weight (kDa)

5.18

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	324
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	2 cut(s)	70, 141
AfaI	GTAC	5 cut(s)	279, 704, 749, 785, 866
AfiI	CCNNNNNNNGG	2 cut(s)	136, 874
AflIII	ACRYGT	1 cut(s)	861
AgsI	TTSAA	1 cut(s)	68
AjiI	CACGTC	1 cut(s)	862
AjnI	CCWGG	1 cut(s)	759
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	71, 127, 232, 495
AluI	AGCT	4 cut(s)	71, 127, 232, 495
Alw21I	GWGCWC	2 cut(s)	129, 146
Alw26I	GTCTC	2 cut(s)	212, 440
AlwI	GGATC	1 cut(s)	764
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	4 cut(s)	232, 484, 580, 822
ApoI	RAATTY	1 cut(s)	754
AspLEI	GCGC	1 cut(s)	766
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	73
Bbv12I	GWGCWC	2 cut(s)	129, 146
BbvI	GCAGC	4 cut(s)	219, 496, 592, 834
BceAI	ACGGC	2 cut(s)	214, 229
BciT130I	CCWGG	1 cut(s)	761
BcnI	CCSGG	1 cut(s)	809
BcoDI	GTCTC	2 cut(s)	212, 440
BfoI	RGCGCY	1 cut(s)	767
BisI	GCNGC	4 cut(s)	233, 485, 581, 823
BlsI	GCNGC	4 cut(s)	234, 486, 582, 824
BmcAI	AGTACT	1 cut(s)	704
Bme1390I	CCNGG	2 cut(s)	761, 809
BmgBI	CACGTC	1 cut(s)	862
BmiI	GGNNCC	2 cut(s)	6, 836
BmrFI	CCNGG	2 cut(s)	761, 809
BpiI	GAAGAC	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	809
BsaI	GGTCTC	2 cut(s)	212, 440
BsaJI	CCNNGG	2 cut(s)	759, 808
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 874
Bse1I	ACTGG	3 cut(s)	745, 785, 901
BseBI	CCWGG	1 cut(s)	761
BseDI	CCNNGG	2 cut(s)	759, 808
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	136, 874
BseMII	CTCAG	1 cut(s)	455
BseNI	ACTGG	3 cut(s)	745, 785, 901
BseRI	GAGGAG	2 cut(s)	38, 890
BseXI	GCAGC	4 cut(s)	219, 496, 592, 834
BshFI	GGCC	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	129, 146
BsiSI	CCGG	2 cut(s)	808, 838
BslI	CCNNNNNNNGG	2 cut(s)	136, 874
BsmAI	GTCTC	2 cut(s)	212, 440
BsnI	GGCC	1 cut(s)	216
Bso31I	GGTCTC	2 cut(s)	212, 440
Bsp1286I	GDGCHC	2 cut(s)	129, 146
Bsp143I	GATC	1 cut(s)	769
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	456
BspLI	GGNNCC	2 cut(s)	6, 836
BspPI	GGATC	1 cut(s)	764
BspQI	GCTCTTC	1 cut(s)	117
BspTNI	GGTCTC	2 cut(s)	212, 440
BsrI	ACTGG	3 cut(s)	745, 785, 901
BssECI	CCNNGG	2 cut(s)	759, 808
BssMI	GATC	1 cut(s)	769
BssSI	CACGAG	1 cut(s)	218
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	761
Bst4CI	ACNGT	3 cut(s)	148, 305, 335
Bst6I	CTCTTC	2 cut(s)	56, 117
BstDEI	CTNAG	1 cut(s)	464
BstF5I	GGATG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	1 cut(s)	772
BstMAI	GTCTC	2 cut(s)	212, 440
BstMBI	GATC	1 cut(s)	769
BstMWI	GCNNNNNNNGC	1 cut(s)	484
BstNI	CCWGG	1 cut(s)	761
BstSCI	CCNGG	2 cut(s)	759, 807
BstV1I	GCAGC	4 cut(s)	219, 496, 592, 834
BstV2I	GAAGAC	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	780
BsuRI	GGCC	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	862
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	3 cut(s)	117, 144, 310
CfoI	GCGC	1 cut(s)	766
Csp6I	GTAC	5 cut(s)	278, 703, 748, 784, 865
CviAII	CATG	3 cut(s)	559, 670, 912
CviQI	GTAC	5 cut(s)	278, 703, 748, 784, 865
DdeI	CTNAG	1 cut(s)	464
DpnI	GATC	1 cut(s)	771
DpnII	GATC	1 cut(s)	769
EaeI	YGGCCR	1 cut(s)	214
Eam1104I	CTCTTC	2 cut(s)	56, 117
EarI	CTCTTC	2 cut(s)	56, 117
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	2 cut(s)	212, 440
Eco53kI	GAGCTC	1 cut(s)	127
Eco57I	CTGAAG	2 cut(s)	70, 141
EcoICRI	GAGCTC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	759
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	3 cut(s)	562, 673, 915
FaiI	YATR	8 cut(s)	204, 283, 343, 394, 560, 671, 819, 913
FatI	CATG	3 cut(s)	558, 669, 911
Fnu4HI	GCNGC	4 cut(s)	233, 485, 581, 823
FokI	GGATG	1 cut(s)	167
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	233, 485, 581, 823
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	4 cut(s)	233, 485, 581, 823
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	808, 838
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	3 cut(s)	562, 673, 915
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HinfI	GANTC	2 cut(s)	221, 851
HpaII	CCGG	2 cut(s)	808, 838
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	6 cut(s)	106, 225, 308, 338, 576, 865
Hpy188I	TCNGA	1 cut(s)	741
Hpy8I	GTNNAC	6 cut(s)	106, 225, 308, 338, 576, 865
Hpy99I	CGWCG	1 cut(s)	863
HpyCH4III	ACNGT	3 cut(s)	148, 305, 335
HpyCH4IV	ACGT	2 cut(s)	654, 861
HpyF10VI	GCNNNNNNNGC	1 cut(s)	484
HpyF3I	CTNAG	1 cut(s)	464
HpySE526I	ACGT	2 cut(s)	654, 861
Hsp92II	CATG	3 cut(s)	562, 673, 915
HspAI	GCGC	1 cut(s)	764
Kzo9I	GATC	1 cut(s)	769
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	10, 132
LpnPI	CCDG	9 cut(s)	47, 746, 758, 766, 773, 821, 851, 868, 881
Lsp1109I	GCAGC	4 cut(s)	219, 496, 592, 834
MaeII	ACGT	2 cut(s)	654, 861
MaeIII	GTNAC	3 cut(s)	151, 467, 812
MalI	GATC	1 cut(s)	771
MboI	GATC	1 cut(s)	769
MboII	GAAGA	7 cut(s)	22, 25, 43, 73, 76, 134, 905
MhlI	GDGCHC	2 cut(s)	129, 146
MluCI	AATT	2 cut(s)	17, 754
MlyI	GAGTC	2 cut(s)	230, 860
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	7 cut(s)	59, 246, 250, 376, 581, 654, 868
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	2 cut(s)	808, 838
MspR9I	CCNGG	2 cut(s)	761, 809
MvaI	CCWGG	1 cut(s)	761
MwoI	GCNNNNNNNGC	1 cut(s)	484
NciI	CCSGG	1 cut(s)	809
NdeII	GATC	1 cut(s)	769
NlaIII	CATG	3 cut(s)	562, 673, 915
NlaIV	GGNNCC	2 cut(s)	6, 836
NmuCI	GTSAC	2 cut(s)	151, 467
OliI	CACNNNNGTG	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PkrI	GCNGC	4 cut(s)	234, 486, 582, 824
PleI	GAGTC	2 cut(s)	229, 859
PpsI	GAGTC	2 cut(s)	229, 859
Psp124BI	GAGCTC	1 cut(s)	129
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	759
PspGI	CCWGG	1 cut(s)	759
PspN4I	GGNNCC	2 cut(s)	6, 836
PsrI	GAACNNNNNNTAC	2 cut(s)	410, 442
RsaI	GTAC	5 cut(s)	279, 704, 749, 785, 866
RsaNI	GTAC	5 cut(s)	278, 703, 748, 784, 865
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	4 cut(s)	233, 485, 581, 823
Sau3AI	GATC	1 cut(s)	769
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	2 cut(s)	230, 860
ScrFI	CCNGG	2 cut(s)	761, 809
SduI	GDGCHC	2 cut(s)	129, 146
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	2 cut(s)	17, 754
SsiI	CCGC	1 cut(s)	324
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	759, 807
TaaI	ACNGT	3 cut(s)	148, 305, 335
TaiI	ACGT	2 cut(s)	657, 864
TaqI	TCGA	2 cut(s)	73, 768
TasI	AATT	2 cut(s)	17, 754
TatI	WGTACW	2 cut(s)	702, 747
TscAI	CASTG	3 cut(s)	124, 151, 310
TseFI	GTSAC	2 cut(s)	151, 467
TseI	GCWGC	4 cut(s)	232, 484, 580, 822
Tsp45I	GTSAC	2 cut(s)	151, 467
TspDTI	ATGAA	1 cut(s)	169
TspRI	CASTG	3 cut(s)	124, 151, 310
XapI	RAATTY	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.