Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

2514439 .. 2516358

Gene Structure 1920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G052200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCTTCTGCTGCAAAATTGTTCTCTTTCCTCTTCTTCCTTGCATCTCTCCTCTTCTCTCAACAAGCTCAAGCTAGAGAAAGCCAATTCTTTAGCAAAGTGGCCAATGTCAACAACAACAAAAACTATGAGAAGGAGACAGAGGTCCCCAAAACAGAAACCCCTGTGAAAAGGCAAGAGCAAGAGCCAGCCTTCATTCCAGAGACCCAAAGTGGATATGGTCTCTATGGCCATGAGTCTGGCCAGCTGCCTCCCACCACCACAAACACCGGTGCACCCTACACCACCACAACCACCGGTGCACCCTACACCACCACCAATGGTGCACAATTCACCACCAACAACAACAACCTGCCATATACAGCTGAGTCAGAGAAAGAGCAGCAGCACACCAACAAGTACCCTGAGACCTACAGCACCCAATACCGCCCCAACAAGAACAACTTTTACTACAATGGCAATTTTGAGAGCAACCCAAGTGACACAAGGTTCACACAGAGCAGCTACACCACAACCACAACCCCAACCAATTACCAAAACACCCGCAACAACTACAATGGGGAGAAGCAGGGCTTGAGTGATGCAAGGCTTACACAGAGCAGCTACACAACCCCAACCAATTACCAAAGCAACAACTACTACAATGCTGAGAAGCAGGGCATGAGTGACACAAGGTTTTTGGAGAATGGAAAGTACTACTATGACGCTCAGAGCGAGAACAACTACAATCAGAACCAGTATGAAAATTCAAGGGTAGTGGATTCAAGACACTGGTACAACAACAGGGGTAACTATGGCAACAACAATGTGAACCAGAACGAGGATCAGTTCCAAGAGAGTGAAGAAGAGTTCGTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.92

Weight (kDa)

5.06

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	360
AciI	CCGC	2 cut(s)	427, 544
AclWI	GGATC	1 cut(s)	831
AcoI	YGGCCR	3 cut(s)	102, 229, 241
AcsI	RAATTY	1 cut(s)	745
AfaI	GTAC	3 cut(s)	401, 695, 776
AfiI	CCNNNNNNNGG	1 cut(s)	820
AgeI	ACCGGT	2 cut(s)	269, 296
AgsI	TTSAA	2 cut(s)	750, 765
AluBI	AGCT	6 cut(s)	68, 74, 247, 365, 504, 603
AluI	AGCT	6 cut(s)	68, 74, 247, 365, 504, 603
Alw21I	GWGCWC	3 cut(s)	277, 304, 328
Alw26I	GTCTC	4 cut(s)	131, 197, 227, 401
Alw44I	GTGCAC	3 cut(s)	273, 300, 324
AlwI	GGATC	1 cut(s)	831
AoxI	GGCC	3 cut(s)	102, 229, 241
ApaLI	GTGCAC	3 cut(s)	273, 300, 324
ApeKI	GCWGC	6 cut(s)	11, 247, 382, 385, 501, 600
ApoI	RAATTY	1 cut(s)	745
AsiGI	ACCGGT	2 cut(s)	269, 296
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	325
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	3 cut(s)	277, 304, 328
BalI	TGGCCA	3 cut(s)	104, 231, 243
Bbv12I	GWGCWC	3 cut(s)	277, 304, 328
BbvI	GCAGC	5 cut(s)	234, 394, 397, 513, 612
BcoDI	GTCTC	4 cut(s)	131, 197, 227, 401
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	360
BisI	GCNGC	6 cut(s)	12, 248, 383, 386, 502, 601
BlsI	GCNGC	6 cut(s)	13, 249, 384, 387, 503, 602
BmcAI	AGTACT	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	147
BmsI	GCATC	2 cut(s)	53, 571
BoxI	GACNNNNGTC	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	54, 595
BsaI	GGTCTC	3 cut(s)	197, 227, 401
BsaWI	WCCGGW	2 cut(s)	269, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	820
Bse118I	RCCGGY	2 cut(s)	269, 296
Bse1I	ACTGG	2 cut(s)	736, 776
BseLI	CCNNNNNNNGG	1 cut(s)	820
BseMII	CTCAG	4 cut(s)	357, 396, 639, 722
BseNI	ACTGG	2 cut(s)	736, 776
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	3 cut(s)	277, 304, 328
BseXI	GCAGC	5 cut(s)	234, 394, 397, 513, 612
BshFI	GGCC	3 cut(s)	104, 231, 243
BshTI	ACCGGT	2 cut(s)	269, 296
BsiHKAI	GWGCWC	3 cut(s)	277, 304, 328
BsiSI	CCGG	2 cut(s)	270, 297
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	820
BsmAI	GTCTC	4 cut(s)	131, 197, 227, 401
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	104, 231, 243
Bso31I	GGTCTC	3 cut(s)	197, 227, 401
Bsp1286I	GDGCHC	3 cut(s)	277, 304, 328
Bsp143I	GATC	1 cut(s)	823
BspACI	CCGC	2 cut(s)	427, 544
BspANI	GGCC	3 cut(s)	104, 231, 243
BspCNI	CTCAG	4 cut(s)	358, 397, 640, 721
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	831
BspTNI	GGTCTC	3 cut(s)	197, 227, 401
BsrFI	RCCGGY	2 cut(s)	269, 296
BsrI	ACTGG	2 cut(s)	736, 776
BssAI	RCCGGY	2 cut(s)	269, 296
BssMI	GATC	1 cut(s)	823
Bst6I	CTCTTC	3 cut(s)	38, 59, 840
BstC8I	GCNNGC	2 cut(s)	189, 245
BstDEI	CTNAG	4 cut(s)	366, 405, 648, 708
BstKTI	GATC	1 cut(s)	826
BstMAI	GTCTC	4 cut(s)	131, 197, 227, 401
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPAI	GACNNNNGTC	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	3 cut(s)	277, 304, 328
BstV1I	GCAGC	5 cut(s)	234, 394, 397, 513, 612
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	104, 231, 243
BtsIMutI	CAGTG	1 cut(s)	769
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	189, 245
Cfr10I	RCCGGY	2 cut(s)	269, 296
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	1 cut(s)	713
Csp6I	GTAC	3 cut(s)	400, 694, 775
CspAI	ACCGGT	2 cut(s)	269, 296
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviAII	CATG	2 cut(s)	233, 661
CviQI	GTAC	3 cut(s)	400, 694, 775
DdeI	CTNAG	4 cut(s)	366, 405, 648, 708
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
EaeI	YGGCCR	3 cut(s)	102, 229, 241
Eam1104I	CTCTTC	3 cut(s)	38, 59, 840
EarI	CTCTTC	3 cut(s)	38, 59, 840
Eco31I	GGTCTC	3 cut(s)	197, 227, 401
Eco47I	GGWCC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	145
FaeI	CATG	2 cut(s)	236, 664
FalI	AAGNNNNNCTT	4 cut(s)	428, 460, 557, 589
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	2 cut(s)	232, 660
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	6 cut(s)	12, 248, 383, 386, 502, 601
Fsp4HI	GCNGC	6 cut(s)	12, 248, 383, 386, 502, 601
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	6 cut(s)	12, 248, 383, 386, 502, 601
HaeIII	GGCC	3 cut(s)	104, 231, 243
HapII	CCGG	2 cut(s)	270, 297
HgaI	GACGC	1 cut(s)	713
Hin1II	CATG	2 cut(s)	236, 664
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	236, 368, 761
HpaII	CCGG	2 cut(s)	270, 297
HphI	GGTGA	1 cut(s)	325
Hpy166II	GTNNAC	6 cut(s)	112, 275, 302, 326, 492, 811
Hpy188I	TCNGA	3 cut(s)	373, 711, 732
Hpy188III	TCNNGA	2 cut(s)	200, 765
Hpy8I	GTNNAC	6 cut(s)	112, 275, 302, 326, 492, 811
HpyAV	CCTTC	2 cut(s)	127, 202
HpyCH4V	TGCA	6 cut(s)	14, 44, 275, 302, 326, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	4 cut(s)	366, 405, 648, 708
Hsp92II	CATG	2 cut(s)	236, 664
Kzo9I	GATC	1 cut(s)	823
Lsp1109I	GCAGC	5 cut(s)	234, 394, 397, 513, 612
LweI	GCATC	2 cut(s)	53, 571
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	479, 665, 788
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MboII	GAAGA	5 cut(s)	25, 28, 46, 854, 857
MhlI	GDGCHC	3 cut(s)	277, 304, 328
MlsI	TGGCCA	3 cut(s)	104, 231, 243
MluCI	AATT	7 cut(s)	17, 86, 329, 460, 529, 619, 745
MluNI	TGGCCA	3 cut(s)	104, 231, 243
MlyI	GAGTC	2 cut(s)	245, 377
MnlI	CCTC	5 cut(s)	41, 62, 136, 261, 814
Mox20I	TGGCCA	3 cut(s)	104, 231, 243
MscI	TGGCCA	3 cut(s)	104, 231, 243
Msp20I	TGGCCA	3 cut(s)	104, 231, 243
MspA1I	CMGCKG	2 cut(s)	247, 365
MspI	CCGG	2 cut(s)	270, 297
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	823
NlaIII	CATG	2 cut(s)	236, 664
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	2 cut(s)	479, 665
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PfeI	GAWTC	1 cut(s)	761
PinAI	ACCGGT	2 cut(s)	269, 296
PkrI	GCNGC	6 cut(s)	13, 249, 384, 387, 503, 602
PleI	GAGTC	2 cut(s)	244, 376
PpsI	GAGTC	2 cut(s)	244, 376
PpuMI	RGGWCCY	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	145
PspPPI	RGGWCCY	1 cut(s)	145
PsrI	GAACNNNNNNTAC	2 cut(s)	431, 463
PvuII	CAGCTG	2 cut(s)	247, 365
RsaI	GTAC	3 cut(s)	401, 695, 776
RsaNI	GTAC	3 cut(s)	400, 694, 775
SatI	GCNGC	6 cut(s)	12, 248, 383, 386, 502, 601
Sau3AI	GATC	1 cut(s)	823
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	695
SchI	GAGTC	2 cut(s)	245, 377
SduI	GDGCHC	3 cut(s)	277, 304, 328
SfaNI	GCATC	2 cut(s)	53, 571
SfcI	CTRYAG	1 cut(s)	412
SgrAI	CRCCGGYG	2 cut(s)	269, 296
SinI	GGWCC	1 cut(s)	145
SmlI	CTYRAG	2 cut(s)	69, 574
SmoI	CTYRAG	2 cut(s)	69, 574
Sse9I	AATT	7 cut(s)	17, 86, 329, 460, 529, 619, 745
SsiI	CCGC	2 cut(s)	427, 544
SspMI	CTAG	1 cut(s)	75
TasI	AATT	7 cut(s)	17, 86, 329, 460, 529, 619, 745
TatI	WGTACW	1 cut(s)	693
TfiI	GAWTC	1 cut(s)	761
TscAI	CASTG	1 cut(s)	776
TseFI	GTSAC	2 cut(s)	479, 665
TseI	GCWGC	6 cut(s)	11, 247, 382, 385, 501, 600
Tsp45I	GTSAC	2 cut(s)	479, 665
TspDTI	ATGAA	2 cut(s)	184, 756
TspRI	CASTG	1 cut(s)	776
VneI	GTGCAC	3 cut(s)	273, 300, 324
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.