Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Forward (+)

37854418 .. 37855257

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1289700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCTCCTCCTCCTCCCAAATTCTTCTCTCTCCTCTTCCTCCTCTCTCTCATCCTCTTCTCTCTCCAAGCTCAAGCCAGAGACAGCCAATTCTTTAGCAAAGTCGCCAGCTCCAACAGCAACAATGTGAAGGAATCAGAGCTCCCCAAAACAGAGTCCCCAAAAACAGAGACTCCAAAAACAGATTCCCCTGTTTTCAATCCAGAAAAAGAGCTAGAGCCAACTTTTGTTCAAGAGACTCAAAACGGATACGGCCTCTACGGCCATGAGTCCGGCCAGCTGCCTCCTGCCACCTACGCCACCGAGACAGAGAAGCAGCACACTACAAACTACCCCGAAAGGTACAACACCCACTACAATCCCAACAAAAACAACTATTACAATGGGAACAACTTTGAGGCCAACCCTAATGGCCTCAGTGACACGAGGTTCGCTCAAGGCAGCTACACCACCACCTCTGCCACCCCTAACAACGACCAGAACAACAACAACTTTGAGGCCAACCCTAATGGCCTCAGCGACACGAGGTTCGGTCAGAGCAGCTACACCACCACCACCGCCACCCCGAACGGCTACCAGAACAACAACTACTACAATTTTGAGAAGCAGGGGATGAGTGACACTAGGTTTTTGGAGAACGGCAAGTATTACTACGACGCGAGAAGCGAGAACAACTACAACCAGAACCAGTATGGAAACTCTAGGGTTGTGGACTCGAAAAACTGGTACAATAACAGGCGTAATTACGGCAACGGAAATGCGAATCAGAACACCTATAACTCCATGGAAGAGTACCAGACTGAGGAGGAGCAACAGAGCGAAGATCAGTTCGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.95

Weight (kDa)

4.82

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	659
AciI	CCGC	1 cut(s)	558
AcoI	YGGCCR	2 cut(s)	262, 274
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	3 cut(s)	344, 728, 794
AfiI	CCNNNNNNNGG	1 cut(s)	802
AgsI	TTSAA	2 cut(s)	199, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	7 cut(s)	71, 111, 142, 214, 280, 444, 543
AluI	AGCT	7 cut(s)	71, 111, 142, 214, 280, 444, 543
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	4 cut(s)	75, 164, 230, 299
AoxI	GGCC	7 cut(s)	253, 262, 274, 399, 412, 498, 511
ApeKI	GCWGC	4 cut(s)	280, 316, 441, 540
ApoI	RAATTY	1 cut(s)	20
ArsI	GACNNNNNNTTYG	4 cut(s)	413, 445, 512, 544
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	2 cut(s)	424, 523
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	4 cut(s)	267, 328, 453, 552
BceAI	ACGGC	5 cut(s)	268, 277, 586, 655, 763
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	4 cut(s)	75, 164, 230, 299
BfaI	CTAG	3 cut(s)	215, 624, 702
BfuI	GTATCC	1 cut(s)	242
BglI	GCCNNNNNGGC	1 cut(s)	261
BisI	GCNGC	4 cut(s)	281, 317, 442, 541
BlsI	GCNGC	4 cut(s)	282, 318, 443, 542
BmiI	GGNNCC	1 cut(s)	6
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
Bpu10I	CCTNAGC	1 cut(s)	515
BpuEI	CTTGAG	2 cut(s)	57, 420
BsaJI	CCNNGG	1 cut(s)	783
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	802
Bse1I	ACTGG	2 cut(s)	688, 728
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	2 cut(s)	51, 618
BseLI	CCNNNNNNNGG	1 cut(s)	802
BseMII	CTCAG	3 cut(s)	430, 529, 792
BseNI	ACTGG	2 cut(s)	688, 728
BseRI	GAGGAG	4 cut(s)	23, 32, 818, 821
BseXI	GCAGC	4 cut(s)	267, 328, 453, 552
Bsh1236I	CGCG	1 cut(s)	659
BshFI	GGCC	7 cut(s)	255, 264, 276, 401, 414, 500, 513
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	802
BsmAI	GTCTC	4 cut(s)	75, 164, 230, 299
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	7 cut(s)	255, 264, 276, 401, 414, 500, 513
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	823
Bsp19I	CCATGG	1 cut(s)	783
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	7 cut(s)	255, 264, 276, 401, 414, 500, 513
BspCNI	CTCAG	3 cut(s)	429, 528, 793
BspFNI	CGCG	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	688, 728
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	1 cut(s)	823
BssSI	CACGAG	2 cut(s)	424, 523
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	2 cut(s)	424, 523
Bst6I	CTCTTC	3 cut(s)	41, 62, 783
BstC8I	GCNNGC	2 cut(s)	109, 278
BstDEI	CTNAG	3 cut(s)	416, 515, 801
BstDSI	CCRYGG	1 cut(s)	783
BstF5I	GGATG	2 cut(s)	51, 618
BstFNI	CGCG	1 cut(s)	659
BstKTI	GATC	1 cut(s)	826
BstMAI	GTCTC	4 cut(s)	75, 164, 230, 299
BstMBI	GATC	1 cut(s)	823
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 261, 296
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	4 cut(s)	267, 328, 453, 552
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	7 cut(s)	255, 264, 276, 401, 414, 500, 513
BtgI	CCRYGG	1 cut(s)	783
BtsCI	GGATG	2 cut(s)	51, 618
BtsIMutI	CAGTG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	109, 278
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	343, 727, 793
CviAII	CATG	3 cut(s)	266, 784, 837
CviQI	GTAC	3 cut(s)	343, 727, 793
DdeI	CTNAG	3 cut(s)	416, 515, 801
DpnI	GATC	1 cut(s)	825
DpnII	GATC	1 cut(s)	823
EaeI	YGGCCR	2 cut(s)	262, 274
Eam1104I	CTCTTC	3 cut(s)	41, 62, 783
EarI	CTCTTC	3 cut(s)	41, 62, 783
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	269, 787, 840
FaiI	YATR	5 cut(s)	267, 693, 777, 785, 838
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	3 cut(s)	265, 783, 836
Fnu4HI	GCNGC	4 cut(s)	281, 317, 442, 541
FokI	GGATG	2 cut(s)	38, 625
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	281, 317, 442, 541
FspBI	CTAG	3 cut(s)	215, 624, 702
GluI	GCNGC	4 cut(s)	281, 317, 442, 541
HaeIII	GGCC	7 cut(s)	255, 264, 276, 401, 414, 500, 513
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	665
Hin1II	CATG	3 cut(s)	269, 787, 840
HinfI	GANTC	8 cut(s)	134, 155, 172, 185, 238, 269, 713, 763
HpaII	CCGG	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	3 cut(s)	139, 537, 768
Hpy188III	TCNNGA	2 cut(s)	203, 233
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 261, 296
HpyF3I	CTNAG	3 cut(s)	416, 515, 801
Hsp92II	CATG	3 cut(s)	269, 787, 840
Kzo9I	GATC	1 cut(s)	823
LmnI	GCTCC	4 cut(s)	10, 116, 147, 808
Lsp1109I	GCAGC	4 cut(s)	267, 328, 453, 552
MaeI	CTAG	3 cut(s)	215, 624, 702
MaeIII	GTNAC	2 cut(s)	419, 617
MalI	GATC	1 cut(s)	825
MboI	GATC	1 cut(s)	823
MboII	GAAGA	5 cut(s)	16, 28, 49, 800, 833
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	20, 89, 595, 742
MlyI	GAGTC	5 cut(s)	164, 166, 232, 278, 707
MmeI	TCCRAC	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	3 cut(s)	117, 261, 296
NcoI	CCATGG	1 cut(s)	783
NdeII	GATC	1 cut(s)	823
NlaIII	CATG	3 cut(s)	269, 787, 840
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	419, 617
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	134, 185, 763
PkrI	GCNGC	4 cut(s)	282, 318, 443, 542
PleI	GAGTC	5 cut(s)	163, 166, 232, 277, 707
PpsI	GAGTC	5 cut(s)	163, 166, 232, 277, 707
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	572, 604
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	3 cut(s)	344, 728, 794
RsaNI	GTAC	3 cut(s)	343, 727, 793
SacI	GAGCTC	1 cut(s)	144
SatI	GCNGC	4 cut(s)	281, 317, 442, 541
Sau3AI	GATC	1 cut(s)	823
SchI	GAGTC	5 cut(s)	164, 166, 232, 278, 707
SduI	GDGCHC	1 cut(s)	144
SfiI	GGCCNNNNNGGCC	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	72, 435
SmoI	CTYRAG	2 cut(s)	72, 435
Sse9I	AATT	4 cut(s)	20, 89, 595, 742
SsiI	CCGC	1 cut(s)	558
SspMI	CTAG	3 cut(s)	215, 624, 702
SstI	GAGCTC	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	783
TaqI	TCGA	1 cut(s)	716
TaqII	GACCGA	1 cut(s)	521
TasI	AATT	4 cut(s)	20, 89, 595, 742
TfiI	GAWTC	3 cut(s)	134, 185, 763
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	419, 617
TseI	GCWGC	4 cut(s)	280, 316, 441, 540
Tsp45I	GTSAC	2 cut(s)	419, 617
TspGWI	ACGGA	2 cut(s)	261, 768
TspRI	CASTG	1 cut(s)	424
XapI	RAATTY	1 cut(s)	20
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XspI	CTAG	3 cut(s)	215, 624, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.