Rroxscaffold_1G00067580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007821
Physical Location & Seq
Forward (+)
88859835 .. 88861169
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00067580.1

Sequence Viewer

Length: 810 bp
ATGGCTCCTAATGTGAAATTGCTCTCTTTCTTCGTCTTGCTATCTCTCCTCATCTCTCAACAGGTTCAAGCTCGAAGTGTCTTCTTCAGCAAAGTAGCCAATGTGGACAACCACAACACTGAAGAGCTCCCCAACAAGGAGAGCACTGTTATGACCAAGCAAGAGCAACAGCCAAACTTCATCCCGCAAACCCAAAACGGCTATGGTCTCTACGGCCACGAGTCCACCGAGCTGCCTCCCTCTACTAAGACCACAGCCACAACCAAAGCTGTACCATACTCCACCACCCCCACCAACAGTGAACATTACACCACCACCGCCACCAACGGTGAACCATACACCACCACCACAAGAACTACCTCCAACGACAACAACAACAACATTCCATACACACACTACAATCCCAACAAGAACAGCAACTACTACAACAACAACTACGAGACCAACCAAAACGGGATGAGTGACACAAGGCTTACGCAGCAGAAAGGCTACACCACTCCCACCACCACCACCCCAACCACCCAAAACAGCAACAGCAACAACTACTACAACGTTGAGAGGCAAGGCATGAGCGACACAAGGTTCTTGGAGAATGGTAAGTACTACTACGACCCGAACAGCGAGAACAACTACAATCAGAACCAGTACAAGAACTCCCAGGTAGTCGATTCAAGAAACTGGTACAACAACAATAACAACAACCGGGGTTACTATGGCAGCAACAATGGGAACCGGAACACCTTTGAGTCCAGCGACGTGTACCAGAACGAGGAGTTCCAAGAGAACGAAGACGACCAGTTCGTGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.91

Weight (kDa)

5.03

Isoelectric Point (pI)

34.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 185, 318
AclI AACGTT 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 214
AcuI CTGAAG 2 cut(s) 70, 141
AfaI GTAC 5 cut(s) 273, 602, 647, 683, 761
AfiI CCNNNNNNNGG 2 cut(s) 136, 769
AflIII ACRYGT 1 cut(s) 756
AgsI TTSAA 2 cut(s) 68, 672
AjiI CACGTC 1 cut(s) 757
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 4 cut(s) 71, 127, 232, 269
AluI AGCT 4 cut(s) 71, 127, 232, 269
Alw21I GWGCWC 2 cut(s) 129, 146
Alw26I GTCTC 2 cut(s) 212, 434
AoxI GGCC 1 cut(s) 214
ApeKI GCWGC 3 cut(s) 232, 478, 717
ArsI GACNNNNNNTTYG 1 cut(s) 782
AsuC2I CCSGG 1 cut(s) 704
AsuHPI GGTGA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 218
BbsI GAAGAC 2 cut(s) 73, 795
Bbv12I GWGCWC 2 cut(s) 129, 146
BbvI GCAGC 3 cut(s) 219, 490, 729
BceAI ACGGC 2 cut(s) 214, 229
BciT130I CCWGG 1 cut(s) 659
BcnI CCSGG 1 cut(s) 704
BcoDI GTCTC 2 cut(s) 212, 434
BisI GCNGC 3 cut(s) 233, 479, 718
BlsI GCNGC 3 cut(s) 234, 480, 719
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 2 cut(s) 659, 704
BmgBI CACGTC 1 cut(s) 757
BmiI GGNNCC 2 cut(s) 6, 731
BmrFI CCNGG 2 cut(s) 659, 704
BpiI GAAGAC 2 cut(s) 73, 795
BpuMI CCSGG 1 cut(s) 704
BsaI GGTCTC 2 cut(s) 212, 434
BsaJI CCNNGG 2 cut(s) 657, 703
BsaWI WCCGGW 1 cut(s) 732
BsaXI ACNNNNNCTCC 2 cut(s) 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 136, 769
Bse1I ACTGG 3 cut(s) 643, 683, 796
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 2 cut(s) 657, 703
BseGI GGATG 2 cut(s) 180, 462
BseLI CCNNNNNNNGG 2 cut(s) 136, 769
BseNI ACTGG 3 cut(s) 643, 683, 796
BseRI GAGGAG 2 cut(s) 38, 785
BseXI GCAGC 3 cut(s) 219, 490, 729
BshFI GGCC 1 cut(s) 216
BsiHKAI GWGCWC 2 cut(s) 129, 146
BsiSI CCGG 2 cut(s) 703, 733
BslI CCNNNNNNNGG 2 cut(s) 136, 769
BsmAI GTCTC 2 cut(s) 212, 434
BsnI GGCC 1 cut(s) 216
Bso31I GGTCTC 2 cut(s) 212, 434
Bsp1286I GDGCHC 2 cut(s) 129, 146
BspACI CCGC 2 cut(s) 185, 318
BspANI GGCC 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 6, 731
BspQI GCTCTTC 1 cut(s) 117
BspTNI GGTCTC 2 cut(s) 212, 434
BsrI ACTGG 3 cut(s) 643, 683, 796
BssECI CCNNGG 2 cut(s) 657, 703
BssSI CACGAG 1 cut(s) 218
Bst2BI CACGAG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 148, 299, 329
Bst6I CTCTTC 1 cut(s) 117
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 180, 462
BstMAI GTCTC 2 cut(s) 212, 434
BstMWI GCNNNNNNNGC 1 cut(s) 478
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 657, 702
BstV1I GCAGC 3 cut(s) 219, 490, 729
BstV2I GAAGAC 2 cut(s) 73, 795
BsuRI GGCC 1 cut(s) 216
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 2 cut(s) 180, 462
BtsIMutI CAGTG 3 cut(s) 117, 144, 304
Csp6I GTAC 5 cut(s) 272, 601, 646, 682, 760
CviAII CATG 2 cut(s) 568, 807
CviQI GTAC 5 cut(s) 272, 601, 646, 682, 760
DdeI CTNAG 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 2 cut(s) 212, 434
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 2 cut(s) 70, 141
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 2 cut(s) 571, 810
FaiI YATR 8 cut(s) 152, 204, 277, 337, 388, 569, 714, 808
FatI CATG 2 cut(s) 567, 806
FauI CCCGC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 233, 479, 718
FokI GGATG 2 cut(s) 167, 469
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 3 cut(s) 233, 479, 718
GluI GCNGC 3 cut(s) 233, 479, 718
HaeIII GGCC 1 cut(s) 216
HapII CCGG 2 cut(s) 703, 733
Hin1II CATG 2 cut(s) 571, 810
HinfI GANTC 3 cut(s) 221, 668, 746
HpaII CCGG 2 cut(s) 703, 733
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 5 cut(s) 106, 225, 302, 332, 760
Hpy188I TCNGA 1 cut(s) 639
Hpy188III TCNNGA 1 cut(s) 672
Hpy8I GTNNAC 5 cut(s) 106, 225, 302, 332, 760
Hpy99I CGWCG 1 cut(s) 758
HpyCH4III ACNGT 3 cut(s) 148, 299, 329
HpyCH4IV ACGT 2 cut(s) 552, 756
HpyF10VI GCNNNNNNNGC 1 cut(s) 478
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 2 cut(s) 552, 756
Hsp92II CATG 2 cut(s) 571, 810
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 10, 132
LpnPI CCDG 9 cut(s) 47, 644, 656, 664, 671, 716, 746, 763, 776
Lsp1109I GCAGC 3 cut(s) 219, 490, 729
MaeII ACGT 2 cut(s) 552, 756
MaeIII GTNAC 2 cut(s) 461, 707
MboII GAAGA 5 cut(s) 22, 73, 76, 134, 800
MhlI GDGCHC 2 cut(s) 129, 146
MluCI AATT 1 cut(s) 17
MlyI GAGTC 2 cut(s) 230, 755
MmeI TCCRAC 1 cut(s) 387
MnlI CCTC 6 cut(s) 59, 246, 250, 370, 552, 763
MslI CAYNNNNRTG 1 cut(s) 149
MspI CCGG 2 cut(s) 703, 733
MspR9I CCNGG 2 cut(s) 659, 704
MvaI CCWGG 1 cut(s) 659
MwoI GCNNNNNNNGC 1 cut(s) 478
NciI CCSGG 1 cut(s) 704
NlaIII CATG 2 cut(s) 571, 810
NlaIV GGNNCC 2 cut(s) 6, 731
NmuCI GTSAC 1 cut(s) 461
PciSI GCTCTTC 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 225, 798
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 3 cut(s) 234, 480, 719
PleI GAGTC 2 cut(s) 229, 754
PpsI GAGTC 2 cut(s) 229, 754
Psp124BI GAGCTC 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 2 cut(s) 6, 731
PsrI GAACNNNNNNTAC 2 cut(s) 404, 436
RsaI GTAC 5 cut(s) 273, 602, 647, 683, 761
RsaNI GTAC 5 cut(s) 272, 601, 646, 682, 760
RseI CAYNNNNRTG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 3 cut(s) 233, 479, 718
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 2 cut(s) 230, 755
ScrFI CCNGG 2 cut(s) 659, 704
SduI GDGCHC 2 cut(s) 129, 146
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 185, 318
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 657, 702
TaaI ACNGT 3 cut(s) 148, 299, 329
TaiI ACGT 2 cut(s) 555, 759
TaqI TCGA 2 cut(s) 73, 666
TasI AATT 1 cut(s) 17
TatI WGTACW 2 cut(s) 600, 645
TfiI GAWTC 1 cut(s) 668
TscAI CASTG 3 cut(s) 124, 151, 304
TseFI GTSAC 1 cut(s) 461
TseI GCWGC 3 cut(s) 232, 478, 717
Tsp45I GTSAC 1 cut(s) 461
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 3 cut(s) 124, 151, 304
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.