Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

14320865 .. 14322082

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G33850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTTTTTCCACTAGCTCATGTCTCTTCTTCTTCCTCTTAACACTTGTTCTTTTCTCAACCCAAATCAGTGCAAGAAACAGCTACTCCTTTGGCAAGTTCCAAAGAGAGGACCCCAAAGAGCAAAACCCTAACAATCTTGTCCCTATCGAAACCAACGAGAAGAAAGAGCCAGATGACCAGAACCCTGCCTTTATCCCCCAGTCCGAAAACGGGTACGGCTTGTATGGTCACGAGACAACCGACAACAACAATGAAGAGTTGAACAATAACAAGTACGAGGACAACGTTAACTACGACGACTCTTTCTCCACCCCCAGCCTAAGCGAAACGGCTCAAACCCAAGAATCTTACAAGAACTACAAAGAGAGCTATCCTAAGACTACCGAGATTTACGACAACAACAAGGACACGAGCTACTACGAAAACTCGAATGCTTACGGGACAGATAAGAGAGATAATGATATTAATGATCCGTACAAGGGTTATAGCAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAAGAGAGAGAAGGAGCCGGCGTACAGGGGTTATAACAACAACGTAGAGAGACAAGGGATGAGCGATACGAGGTATATGGCGAATGGTAAGTACTATTACGACCTTGACGATGACAGAAACCACGGCCGTTTCTACCAGAATCATTACTACAACTACAAGCCCACCGGTTACAATGAGAAGAAGTCCAACTTCAAGAATCCATACGATTCCAACCAACAGTCCGAGATGTTGGGGGAAGAGCAAGGAGATCAGATCACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

31.35

Weight (kDa)

4.62

Isoelectric Point (pI)

42.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	664
AfaI	GTAC	5 cut(s)	218, 278, 479, 563, 632
AfiI	CCNNNNNNNGG	3 cut(s)	109, 213, 482
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	2 cut(s)	265, 733
AluBI	AGCT	5 cut(s)	18, 84, 372, 417, 507
AluI	AGCT	5 cut(s)	18, 84, 372, 417, 507
Alw26I	GTCTC	3 cut(s)	29, 230, 583
AlwI	GGATC	1 cut(s)	467
AoxI	GGCC	1 cut(s)	664
AseI	ATTAAT	1 cut(s)	468
AsiGI	ACCGGT	1 cut(s)	704
AspS9I	GGNCC	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	112
BauI	CACGAG	3 cut(s)	233, 412, 502
BceAI	ACGGC	4 cut(s)	235, 348, 651, 679
BcoDI	GTCTC	3 cut(s)	29, 230, 583
BfaI	CTAG	1 cut(s)	15
BmcAI	AGTACT	1 cut(s)	632
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	114, 555
BmrI	ACTGGG	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	196
Bpu10I	CCTNAGC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	661
BsaWI	WCCGGW	1 cut(s)	704
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 293, 323, 545, 575
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 213, 482
Bse118I	RCCGGY	2 cut(s)	556, 704
Bse1I	ACTGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	1 cut(s)	603
BseLI	CCNNNNNNNGG	3 cut(s)	109, 213, 482
BseNI	ACTGG	1 cut(s)	202
BseX3I	CGGCCG	1 cut(s)	664
BseYI	CCCAGC	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	667
BshFI	GGCC	1 cut(s)	666
BshTI	ACCGGT	1 cut(s)	704
BsiEI	CGRYCG	1 cut(s)	667
BsiSI	CCGG	2 cut(s)	557, 705
BslFI	GGGAC	3 cut(s)	128, 457, 547
BslI	CCNNNNNNNGG	3 cut(s)	109, 213, 482
BsmAI	GTCTC	3 cut(s)	29, 230, 583
BsmFI	GGGAC	3 cut(s)	128, 457, 547
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	666
Bsp143I	GATC	3 cut(s)	472, 787, 792
BspANI	GGCC	1 cut(s)	666
BspLI	GGNNCC	2 cut(s)	114, 555
BspPI	GGATC	1 cut(s)	467
BspQI	GCTCTTC	1 cut(s)	771
BsrFI	RCCGGY	2 cut(s)	556, 704
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	2 cut(s)	556, 704
BssECI	CCNNGG	1 cut(s)	661
BssMI	GATC	3 cut(s)	472, 787, 792
BssSI	CACGAG	3 cut(s)	233, 412, 502
Bst2BI	CACGAG	3 cut(s)	233, 412, 502
Bst4CI	ACNGT	1 cut(s)	759
Bst6I	CTCTTC	4 cut(s)	32, 252, 536, 771
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	323, 378
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	1 cut(s)	603
BstKTI	GATC	3 cut(s)	475, 790, 795
BstMAI	GTCTC	3 cut(s)	29, 230, 583
BstMBI	GATC	3 cut(s)	472, 787, 792
BstMCI	CGRYCG	1 cut(s)	667
BstZI	CGGCCG	1 cut(s)	664
BsuRI	GGCC	1 cut(s)	666
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	558
Cfr10I	RCCGGY	2 cut(s)	556, 704
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	5 cut(s)	217, 277, 478, 562, 631
CspAI	ACCGGT	1 cut(s)	704
CviAII	CATG	2 cut(s)	21, 801
CviQI	GTAC	5 cut(s)	217, 277, 478, 562, 631
DdeI	CTNAG	2 cut(s)	323, 378
DpnI	GATC	3 cut(s)	474, 789, 794
DpnII	GATC	3 cut(s)	472, 787, 792
EaeI	YGGCCR	1 cut(s)	664
EagI	CGGCCG	1 cut(s)	664
Eam1104I	CTCTTC	4 cut(s)	32, 252, 536, 771
EarI	CTCTTC	4 cut(s)	32, 252, 536, 771
EclXI	CGGCCG	1 cut(s)	664
Eco47I	GGWCC	1 cut(s)	112
Eco52I	CGGCCG	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	112
FaeI	CATG	2 cut(s)	24, 804
FaiI	YATR	8 cut(s)	22, 228, 489, 573, 615, 617, 742, 802
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	3 cut(s)	128, 457, 547
FatI	CATG	2 cut(s)	20, 800
FokI	GGATG	1 cut(s)	610
FspBI	CTAG	1 cut(s)	15
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	666
HapII	CCGG	2 cut(s)	557, 705
Hin1II	CATG	2 cut(s)	24, 804
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	5 cut(s)	302, 347, 679, 736, 746
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	557, 705
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	3 cut(s)	208, 763, 792
Hpy188III	TCNNGA	2 cut(s)	233, 733
Hpy8I	GTNNAC	1 cut(s)	292
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	544
HpyCH4III	ACNGT	1 cut(s)	759
HpyCH4IV	ACGT	2 cut(s)	288, 582
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	323, 378
HpySE526I	ACGT	2 cut(s)	288, 582
Hsp92II	CATG	2 cut(s)	24, 804
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	472, 787, 792
LguI	GCTCTTC	1 cut(s)	771
LmnI	GCTCC	1 cut(s)	553
LpnPI	CCDG	9 cut(s)	186, 194, 201, 215, 331, 550, 570, 689, 718
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	2 cut(s)	288, 582
MaeIII	GTNAC	2 cut(s)	230, 707
MalI	GATC	3 cut(s)	474, 789, 794
MboI	GATC	3 cut(s)	472, 787, 792
MboII	GAAGA	8 cut(s)	19, 22, 25, 175, 269, 553, 730, 788
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	2 cut(s)	750, 774
MnlI	CCTC	4 cut(s)	47, 103, 274, 603
MroNI	GCCGGC	1 cut(s)	556
MseI	TTAA	3 cut(s)	41, 291, 468
MspI	CCGG	2 cut(s)	557, 705
Mva1269I	GAATGC	1 cut(s)	439
NaeI	GCCGGC	1 cut(s)	558
NdeII	GATC	3 cut(s)	472, 787, 792
NgoMIV	GCCGGC	1 cut(s)	556
NlaIII	CATG	2 cut(s)	24, 804
NlaIV	GGNNCC	2 cut(s)	114, 555
NmuCI	GTSAC	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	5 cut(s)	156, 240, 285, 294, 645
PctI	GAATGC	1 cut(s)	439
PdiI	GCCGGC	1 cut(s)	558
PfeI	GAWTC	4 cut(s)	347, 679, 736, 746
PinAI	ACCGGT	1 cut(s)	704
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PpuMI	RGGWCCY	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	468
PsiI	TTATAA	1 cut(s)	573
Psp1406I	AACGTT	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	114, 555
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
RsaI	GTAC	5 cut(s)	218, 278, 479, 563, 632
RsaNI	GTAC	5 cut(s)	217, 277, 478, 562, 631
SapI	GCTCTTC	1 cut(s)	771
SaqAI	TTAA	3 cut(s)	41, 291, 468
Sau3AI	GATC	3 cut(s)	472, 787, 792
Sau96I	GGNCC	1 cut(s)	112
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	1 cut(s)	296
SetI	ASST	9 cut(s)	20, 86, 291, 374, 419, 509, 585, 614, 645
SinI	GGWCC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	759
TaiI	ACGT	2 cut(s)	291, 585
TaqI	TCGA	2 cut(s)	150, 431
TatI	WGTACW	1 cut(s)	630
TfiI	GAWTC	4 cut(s)	347, 679, 736, 746
Tru1I	TTAA	3 cut(s)	41, 291, 468
Tru9I	TTAA	3 cut(s)	41, 291, 468
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	230
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	1 cut(s)	270
TspGWI	ACGGA	2 cut(s)	465, 551
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	468
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.