Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Forward (+)

44108474 .. 44109969

Gene Structure 1496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1310400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCTCCTCCTCCTCCCAAATTCTTCTCTCTCCTCTTCCTCCTCTCTCTCCTCCTCTTCTCTCTCCAAGCTCAAGCCAGAGAGAGCCAATTCTTTAGCAAAGTTGCCAGTTCTAACAACAACAATGTGAAGGAATCAGAGCTCACAAAAACAGAGACTCCAAAAACAGAGTCTCCAGAAACAGAGCTCCCAAAAACAGAGTCCCCAGTTTTCAAGCAAGAGCAAGAGAAAGAGCCAACTTTCATTCCAGAGACTCAAAACGGATACGGCCTCTACGGTCATGAGTCCGGCCAGCTGCCTCCCTCCACCACAACCAACGGTGAACCCTACAAGTACACACCCAACAACAACAACAACCTGCCCTATACGGCCGAGGCAGAGAAGCAGCACAATACAAAGTACCCCGACAGATACAACAACCACTACAATCCCAACAAAAACAATTACTACTACAACGGGAACAAGTTTGAGGCCAACCCTAATGGCCTCAGCGACGCGAAGTTCGCTCAGAGCAGCTACACCACCACCACTGCCACCCCCAACAACTACCAGAGCAACAACAACAACTTTGAGGCCAATCCTAATGGCCTGAGCAACACGAGGTTCGCTCAGAGCAGCTACACTACCACACCCAGCAACTACCAGTACAACAACAACTTTGAGGCCAATCCTAATGGCCTGAGCGACACGAGGTTCGCTCAAAGCAGCTACACCGCCACCCCAAACAACTACCAGAACAATAACAACTACTACAATGTTGAGAAGCAGGGAATGAGTGACACCAGGTTTTTGGAGAACGGCAAGTACTACTACGACCCGAGAAGCCAGAGCAACTACAACCAGAACCAGTACGGAAACTCTAGGGTGGCGGACTCAAAAAATTGGTACAACAACAGGGGCAATTACGGCAACGGAAATGCGAACCAGAACACCTATAACTCCATGGAAGAGTACCAGAATGAGGAGGAGTTCCAAGACAGTGAAGATCAGTTCGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

38.2

Weight (kDa)

4.96

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccII	CGCG	1 cut(s)	497
AciI	CCGC	2 cut(s)	714, 869
AcoI	YGGCCR	2 cut(s)	289, 369
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	7 cut(s)	335, 401, 647, 806, 851, 887, 953
AfiI	CCNNNNNNNGG	1 cut(s)	961
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	782
AluBI	AGCT	7 cut(s)	71, 142, 187, 295, 516, 618, 708
AluI	AGCT	7 cut(s)	71, 142, 187, 295, 516, 618, 708
Alw21I	GWGCWC	2 cut(s)	144, 189
Alw26I	GTCTC	3 cut(s)	149, 177, 245
Ama87I	CYCGRG	1 cut(s)	817
AoxI	GGCC	9 cut(s)	268, 289, 369, 471, 484, 573, 586, 663, 676
ApeKI	GCWGC	5 cut(s)	295, 385, 513, 615, 705
ApoI	RAATTY	1 cut(s)	20
ArsI	GACNNNNNNTTYG	8 cut(s)	155, 185, 187, 217, 485, 517, 677, 709
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	1 cut(s)	817
BanII	GRGCYC	2 cut(s)	144, 189
BauI	CACGAG	2 cut(s)	598, 688
Bbv12I	GWGCWC	2 cut(s)	144, 189
BbvCI	CCTCAGC	1 cut(s)	488
BbvI	GCAGC	5 cut(s)	282, 397, 525, 627, 717
BceAI	ACGGC	4 cut(s)	283, 384, 814, 922
BciT130I	CCWGG	1 cut(s)	784
BciVI	GTATCC	1 cut(s)	257
BcoDI	GTCTC	3 cut(s)	149, 177, 245
BfaI	CTAG	1 cut(s)	861
BfuAI	ACCTGC	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	257
BisI	GCNGC	5 cut(s)	296, 386, 514, 616, 706
BlsI	GCNGC	5 cut(s)	297, 387, 515, 617, 707
BmcAI	AGTACT	1 cut(s)	806
Bme1390I	CCNGG	1 cut(s)	784
BmeT110I	CYCGRG	1 cut(s)	817
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	784
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BplI	GAGNNNNNCTC	4 cut(s)	592, 624, 682, 714
BpmI	CTGGAG	1 cut(s)	159
Bpu10I	CCTNAGC	3 cut(s)	488, 590, 680
BpuEI	CTTGAG	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	372, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	142, 157, 172, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	961
Bse1I	ACTGG	4 cut(s)	108, 206, 643, 847
BseBI	CCWGG	1 cut(s)	784
BseDI	CCNNGG	2 cut(s)	372, 942
BseLI	CCNNNNNNNGG	1 cut(s)	961
BseMII	CTCAG	5 cut(s)	502, 521, 581, 623, 671
BseNI	ACTGG	4 cut(s)	108, 206, 643, 847
BseRI	GAGGAG	6 cut(s)	23, 32, 41, 44, 977, 980
BseX3I	CGGCCG	1 cut(s)	369
BseXI	GCAGC	5 cut(s)	282, 397, 525, 627, 717
BseYI	CCCAGC	1 cut(s)	632
Bsh1236I	CGCG	1 cut(s)	497
Bsh1285I	CGRYCG	1 cut(s)	372
BshFI	GGCC	9 cut(s)	270, 291, 371, 473, 486, 575, 588, 665, 678
BsiEI	CGRYCG	1 cut(s)	372
BsiHKAI	GWGCWC	2 cut(s)	144, 189
BsiHKCI	CYCGRG	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	961
BsmAI	GTCTC	3 cut(s)	149, 177, 245
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	9 cut(s)	270, 291, 371, 473, 486, 575, 588, 665, 678
BsoBI	CYCGRG	1 cut(s)	817
Bsp1286I	GDGCHC	2 cut(s)	144, 189
Bsp143I	GATC	1 cut(s)	985
Bsp19I	CCATGG	1 cut(s)	942
BspACI	CCGC	2 cut(s)	714, 869
BspANI	GGCC	9 cut(s)	270, 291, 371, 473, 486, 575, 588, 665, 678
BspCNI	CTCAG	5 cut(s)	501, 520, 582, 622, 672
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	366
BsrI	ACTGG	4 cut(s)	108, 206, 643, 847
BssECI	CCNNGG	2 cut(s)	372, 942
BssMI	GATC	1 cut(s)	985
BssSI	CACGAG	2 cut(s)	598, 688
BssT1I	CCWWGG	1 cut(s)	942
Bst2BI	CACGAG	2 cut(s)	598, 688
Bst2UI	CCWGG	1 cut(s)	784
Bst4CI	ACNGT	3 cut(s)	278, 320, 980
Bst6I	CTCTTC	3 cut(s)	41, 62, 942
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	5 cut(s)	488, 507, 590, 609, 680
BstDSI	CCRYGG	1 cut(s)	942
BstFNI	CGCG	1 cut(s)	497
BstKTI	GATC	1 cut(s)	988
BstMAI	GTCTC	3 cut(s)	149, 177, 245
BstMBI	GATC	1 cut(s)	985
BstMCI	CGRYCG	1 cut(s)	372
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 906
BstNI	CCWGG	1 cut(s)	784
BstSCI	CCNGG	1 cut(s)	782
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	5 cut(s)	282, 397, 525, 627, 717
BstXI	CCANNNNNNTGG	1 cut(s)	790
BstZI	CGGCCG	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	9 cut(s)	270, 291, 371, 473, 486, 575, 588, 665, 678
BtgI	CCRYGG	1 cut(s)	942
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	2 cut(s)	528, 985
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	293
CciI	TCATGA	1 cut(s)	280
CseI	GACGC	1 cut(s)	503
CsiI	ACCWGGT	1 cut(s)	782
Csp6I	GTAC	7 cut(s)	334, 400, 646, 805, 850, 886, 952
CviAII	CATG	3 cut(s)	281, 943, 999
CviQI	GTAC	7 cut(s)	334, 400, 646, 805, 850, 886, 952
DdeI	CTNAG	5 cut(s)	488, 507, 590, 609, 680
DpnI	GATC	1 cut(s)	987
DpnII	GATC	1 cut(s)	985
EaeI	YGGCCR	2 cut(s)	289, 369
EagI	CGGCCG	1 cut(s)	369
Eam1104I	CTCTTC	3 cut(s)	41, 62, 942
EarI	CTCTTC	3 cut(s)	41, 62, 942
EciI	GGCGGA	1 cut(s)	884
Ecl136II	GAGCTC	2 cut(s)	142, 187
EclXI	CGGCCG	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	942
Eco24I	GRGCYC	2 cut(s)	144, 189
Eco52I	CGGCCG	1 cut(s)	369
Eco53kI	GAGCTC	2 cut(s)	142, 187
Eco88I	CYCGRG	1 cut(s)	817
EcoICRI	GAGCTC	2 cut(s)	142, 187
EcoRII	CCWGG	1 cut(s)	782
EcoT14I	CCWWGG	1 cut(s)	942
EcoT38I	GRGCYC	2 cut(s)	144, 189
ErhI	CCWWGG	1 cut(s)	942
FaeI	CATG	3 cut(s)	284, 946, 1002
FaiI	YATR	5 cut(s)	282, 366, 936, 944, 1000
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	3 cut(s)	280, 942, 998
Fnu4HI	GCNGC	5 cut(s)	296, 386, 514, 616, 706
FriOI	GRGCYC	2 cut(s)	144, 189
Fsp4HI	GCNGC	5 cut(s)	296, 386, 514, 616, 706
FspBI	CTAG	1 cut(s)	861
GluI	GCNGC	5 cut(s)	296, 386, 514, 616, 706
GsaI	CCCAGC	1 cut(s)	636
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	9 cut(s)	270, 291, 371, 473, 486, 575, 588, 665, 678
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	503
Hin1II	CATG	3 cut(s)	284, 946, 1002
HinfI	GANTC	7 cut(s)	134, 157, 170, 200, 253, 284, 872
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	323, 336
Hpy188I	TCNGA	3 cut(s)	139, 510, 612
Hpy188III	TCNNGA	3 cut(s)	176, 248, 281
Hpy8I	GTNNAC	2 cut(s)	323, 336
Hpy99I	CGWCG	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	3 cut(s)	278, 320, 980
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 906
HpyF3I	CTNAG	5 cut(s)	488, 507, 590, 609, 680
Hsp92II	CATG	3 cut(s)	284, 946, 1002
Kzo9I	GATC	1 cut(s)	985
LmnI	GCTCC	2 cut(s)	10, 192
Lsp1109I	GCAGC	5 cut(s)	282, 397, 525, 627, 717
MabI	ACCWGGT	1 cut(s)	782
MaeI	CTAG	1 cut(s)	861
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	1 cut(s)	987
MboI	GATC	1 cut(s)	985
MboII	GAAGA	5 cut(s)	16, 28, 49, 959, 995
MhlI	GDGCHC	2 cut(s)	144, 189
MluCI	AATT	5 cut(s)	20, 89, 442, 880, 901
MlyI	GAGTC	6 cut(s)	151, 179, 209, 247, 293, 866
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	784
MvaI	CCWGG	1 cut(s)	784
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	503, 906
NcoI	CCATGG	1 cut(s)	942
NdeII	GATC	1 cut(s)	985
NlaIII	CATG	3 cut(s)	284, 946, 1002
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	776
PagI	TCATGA	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	297, 387, 515, 617, 707
PleI	GAGTC	6 cut(s)	151, 178, 208, 247, 292, 866
PpsI	GAGTC	6 cut(s)	151, 178, 208, 247, 292, 866
Psp124BI	GAGCTC	2 cut(s)	144, 189
Psp6I	CCWGG	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	782
PspN4I	GGNNCC	1 cut(s)	6
PsrI	GAACNNNNNNTAC	2 cut(s)	788, 820
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	7 cut(s)	335, 401, 647, 806, 851, 887, 953
RsaNI	GTAC	7 cut(s)	334, 400, 646, 805, 850, 886, 952
SacI	GAGCTC	2 cut(s)	144, 189
SatI	GCNGC	5 cut(s)	296, 386, 514, 616, 706
Sau3AI	GATC	1 cut(s)	985
ScaI	AGTACT	1 cut(s)	806
SchI	GAGTC	6 cut(s)	151, 179, 209, 247, 293, 866
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	2 cut(s)	144, 189
SexAI	ACCWGGT	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	5 cut(s)	20, 89, 442, 880, 901
SsiI	CCGC	2 cut(s)	714, 869
SspMI	CTAG	1 cut(s)	861
SstI	GAGCTC	2 cut(s)	144, 189
StyD4I	CCNGG	1 cut(s)	782
StyI	CCWWGG	1 cut(s)	942
TaaI	ACNGT	3 cut(s)	278, 320, 980
TasI	AATT	5 cut(s)	20, 89, 442, 880, 901
TatI	WGTACW	3 cut(s)	333, 645, 804
TfiI	GAWTC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	535, 985
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	5 cut(s)	295, 385, 513, 615, 705
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	3 cut(s)	276, 867, 927
TspRI	CASTG	2 cut(s)	535, 985
XapI	RAATTY	1 cut(s)	20
XspI	CTAG	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.