Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

6776333 .. 6777815

Gene Structure 1483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTTCACCACTAACCCTCTCCACACTATTATACACCACTCCAAAGTCCAAAGCAAGAGCACCCTCTTTCTTCACTTGCCATCATCCATGGCTCCTAGTGCGAAATTGCTCTCTTTCTTCTTCGTGCTATCTCTCCTCTTCTCTCAACAGGTTCAAGCTCGAAGTGTCTTCTTCAGCAAAGTAGCCAATGTGGACAACCACAACACTGAAGAGCTCCCCAACAAGGAGAGCACTGTTGTGACCAAGCAAGAGCAACAGCCAAACTTCATCCCGCAAACCCAAAACGGCTATGGTCTCTACGGCCACGAGTCCACCGAGCTGCCTCCCTCTACCAAGACCACAGCCACAACCAACGCTGTACCATACTCCACCACCCCCACCAACAGTGAACATTACACTACCACCACCACCAACGGTGAACCATACACCACCACCACAAGAACTACCTCCAACGACGACAACAACAACATTCCATACACACACTACAATCCCAACAAGAACAGCAACTACTATAACAACAACTACGAGACCAACCAAAACGGGATGAGTGACACAAGGTTGACGCAGCAGAAAGGCTACACCACCCCAACCACCCAAAACAGCAACAGCAACAACTACTACAATGTTGAGAGGCAAGGCATGAGCGACACAAGGTTCTTGGAGAATGGTAAGTACCACTACGACATTAACAGCGAGAACAACTACAATCAGAACCAGTACAAGAATTCCCAGGTGGTCGATTCAAGAAACTGGTACAACAACAACAATAACAACAACCGGGGTTACTATGGCAGCAACAATGGGAACCGGAACACCTTTGAGTCCAGCGACGTGTACCAGAACGAGGAGTTCCAAGAGAACGAAGATGACCAGTTCGTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

33.79

Weight (kDa)

5.56

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	724
AcuI	CTGAAG	2 cut(s)	157, 228
AfaI	GTAC	5 cut(s)	360, 674, 719, 755, 836
AfiI	CCNNNNNNNGG	2 cut(s)	223, 844
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	2 cut(s)	155, 744
AjiI	CACGTC	1 cut(s)	832
AjnI	CCWGG	1 cut(s)	729
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	3 cut(s)	158, 214, 319
AluI	AGCT	3 cut(s)	158, 214, 319
Alw21I	GWGCWC	3 cut(s)	62, 216, 233
Alw26I	GTCTC	2 cut(s)	299, 521
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	3 cut(s)	319, 565, 792
ApoI	RAATTY	1 cut(s)	724
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	1 cut(s)	428
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	3 cut(s)	62, 216, 233
BbvI	GCAGC	3 cut(s)	306, 577, 804
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	2 cut(s)	301, 316
BciT130I	CCWGG	1 cut(s)	731
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	2 cut(s)	299, 521
BfaI	CTAG	1 cut(s)	96
BisI	GCNGC	3 cut(s)	320, 566, 793
BlsI	GCNGC	3 cut(s)	321, 567, 794
Bme1390I	CCNGG	2 cut(s)	731, 779
BmgBI	CACGTC	1 cut(s)	832
BmiI	GGNNCC	2 cut(s)	93, 806
BmrFI	CCNGG	2 cut(s)	731, 779
BpiI	GAAGAC	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	779
BsaI	GGTCTC	2 cut(s)	299, 521
BsaJI	CCNNGG	3 cut(s)	87, 729, 778
BsaWI	WCCGGW	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 844
Bse1I	ACTGG	3 cut(s)	715, 755, 871
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	3 cut(s)	87, 729, 778
BseGI	GGATG	3 cut(s)	83, 267, 549
BseLI	CCNNNNNNNGG	2 cut(s)	223, 844
BseNI	ACTGG	3 cut(s)	715, 755, 871
BseRI	GAGGAG	2 cut(s)	125, 860
BseXI	GCAGC	3 cut(s)	306, 577, 804
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	3 cut(s)	62, 216, 233
BsiSI	CCGG	2 cut(s)	778, 808
BslI	CCNNNNNNNGG	2 cut(s)	223, 844
BsmAI	GTCTC	2 cut(s)	299, 521
BsnI	GGCC	1 cut(s)	303
Bso31I	GGTCTC	2 cut(s)	299, 521
Bsp1286I	GDGCHC	3 cut(s)	62, 216, 233
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	303
BspLI	GGNNCC	2 cut(s)	93, 806
BspQI	GCTCTTC	1 cut(s)	204
BspTNI	GGTCTC	2 cut(s)	299, 521
BsrI	ACTGG	3 cut(s)	715, 755, 871
BssECI	CCNNGG	3 cut(s)	87, 729, 778
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	3 cut(s)	235, 386, 416
Bst6I	CTCTTC	2 cut(s)	143, 204
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	83, 267, 549
BstMAI	GTCTC	2 cut(s)	299, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	729, 777
BstV1I	GCAGC	3 cut(s)	306, 577, 804
BstV2I	GAAGAC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	832
BtsCI	GGATG	3 cut(s)	83, 267, 549
BtsIMutI	CAGTG	3 cut(s)	204, 231, 391
CseI	GACGC	1 cut(s)	571
Csp6I	GTAC	5 cut(s)	359, 673, 718, 754, 835
CviAII	CATG	3 cut(s)	88, 640, 882
CviQI	GTAC	5 cut(s)	359, 673, 718, 754, 835
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	143, 204
EarI	CTCTTC	2 cut(s)	143, 204
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	299, 521
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	157, 228
EcoICRI	GAGCTC	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	3 cut(s)	91, 643, 885
FatI	CATG	3 cut(s)	87, 639, 881
FauI	CCCGC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	320, 566, 793
FokI	GGATG	3 cut(s)	70, 254, 556
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	3 cut(s)	320, 566, 793
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	3 cut(s)	320, 566, 793
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	2 cut(s)	778, 808
HgaI	GACGC	1 cut(s)	571
Hin1II	CATG	3 cut(s)	91, 643, 885
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	3 cut(s)	308, 740, 821
HpaII	CCGG	2 cut(s)	778, 808
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	7 cut(s)	6, 193, 312, 389, 419, 561, 835
Hpy188I	TCNGA	1 cut(s)	711
Hpy188III	TCNNGA	1 cut(s)	744
Hpy8I	GTNNAC	7 cut(s)	6, 193, 312, 389, 419, 561, 835
Hpy99I	CGWCG	2 cut(s)	458, 833
HpyCH4III	ACNGT	3 cut(s)	235, 386, 416
HpyCH4IV	ACGT	1 cut(s)	831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	3 cut(s)	91, 643, 885
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	2 cut(s)	97, 219
LpnPI	CCDG	9 cut(s)	134, 716, 728, 736, 743, 791, 821, 838, 851
Lsp1109I	GCAGC	3 cut(s)	306, 577, 804
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	3 cut(s)	238, 548, 782
MboII	GAAGA	8 cut(s)	62, 109, 112, 130, 160, 163, 221, 875
MhlI	GDGCHC	3 cut(s)	62, 216, 233
MluCI	AATT	2 cut(s)	104, 724
MlyI	GAGTC	2 cut(s)	317, 830
MmeI	TCCRAC	1 cut(s)	474
MnlI	CCTC	8 cut(s)	27, 74, 146, 333, 337, 457, 624, 838
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	2 cut(s)	778, 808
MspR9I	CCNGG	2 cut(s)	731, 779
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	87
NlaIII	CATG	3 cut(s)	91, 643, 885
NlaIV	GGNNCC	2 cut(s)	93, 806
NmuCI	GTSAC	2 cut(s)	238, 548
OliI	CACNNNNGTG	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	3 cut(s)	321, 567, 794
PleI	GAGTC	2 cut(s)	316, 829
PpsI	GAGTC	2 cut(s)	316, 829
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	729
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	2 cut(s)	93, 806
PsrI	GAACNNNNNNTAC	2 cut(s)	491, 523
RsaI	GTAC	5 cut(s)	360, 674, 719, 755, 836
RsaNI	GTAC	5 cut(s)	359, 673, 718, 754, 835
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	3 cut(s)	320, 566, 793
SchI	GAGTC	2 cut(s)	317, 830
ScrFI	CCNGG	2 cut(s)	731, 779
SduI	GDGCHC	3 cut(s)	62, 216, 233
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	104, 724
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	729, 777
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	3 cut(s)	235, 386, 416
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	2 cut(s)	160, 738
TasI	AATT	2 cut(s)	104, 724
TatI	WGTACW	1 cut(s)	717
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	3 cut(s)	211, 238, 391
TseFI	GTSAC	2 cut(s)	238, 548
TseI	GCWGC	3 cut(s)	319, 565, 792
Tsp45I	GTSAC	2 cut(s)	238, 548
TspDTI	ATGAA	1 cut(s)	256
TspRI	CASTG	3 cut(s)	211, 238, 391
XapI	RAATTY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.