Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007821

Physical Location & Seq

Genomic Coordinates Reverse (-)

2492174 .. 2492989

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G052000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCTTCTGCTGCAAAATTGTTCTCTTTCCTCTTCTTCCTTGCATCTCTCCTCTTCTCTCAACAAGCTCAAGCTAGAGAAAACCAATTCTTTAGCAAAGTGGCCAATGTCAACAACCACAACAACTATGAGAAGGAGATCCCCATAGCAGAAACCCCTTTGAAAAAGCAAGAGCAAGAGCCAGCCTTCATTCCAGAGACCCAAAGTGGATATGGTCTCGATGGTCTCTATGGCCATGGGTCTGGCCAGCTGCCTCCCACCCCCACAAACACCGTTGGACACTACACCACCACAAACACCGGTGCACCCTACACCACCACAACCACCGGTGCACCCTACACCACTACCAATGGTGCACAATTCACCACCAACAACAACAACCTGCCATATACAGCTGAGTCAGAGAAAGAGCAGCAGCACACCAACAAGTACCCTCAGACCTACAACGCCCAATTAATCCCCAGCAAGAACAACTTTAACAACCATGTCGGCCCGGCCCCCCCAAGTGACACAAGGTTCTCACAGAGCAGCAATACCACAACCACAACCCCAACCAATTACCAAAACAACCACAACAACTACAATGCTGAGAAGCAGGGCTTGAATGATGCAAGGCTTACACAGAGCAGCTACACAACCCCAACCAATTACCAAAGCAACAACTACTACGATGCTGAGAAGCAGGGCACGAGTGACACAAGGTTTTTGAAGAAAGGAAAGGACTACTACAGTGCTGCGAAGGCGCTGAGTTCGTGCCATAAGCTGAGACTTGTTTTGATTAGTACCACTTTGCTGTGTTTGATATATTTATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.08

Weight (kDa)

8.34

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28400 AT2G33850
fragaria_vesca	FvH4_3g08671 FvH4_3g08671 FvH4_3g08671
malus_domestica	MD05G1310400.v1.1 MD10G1289700.v1.1
prunus_persica	Prupe.4G052000_v2.0.a1 Prupe.4G052200_v2.0.a1 Prupe.4G052200_v2.0.a1
pyrus_communis	pycom05g28690 pycom10g24210
rosa_laevigata	RLG00000031630
rosa_multiflora	Rmu_sc0005923.1_g000008
rosa_roxburghii	Rroxscaffold_1G00067580 Rroxscaffold_4G00323090
rosa_rugosa	Rorug04G0441200
rosa_samantha	Rh5AG070600 Rh5BG067400 Rh5CG079300 Rh5DG067100 Rh6BG393700 Rh7AG154200
rosa_wichuraiana	Rw5G006590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	133
AcoI	YGGCCR	3 cut(s)	102, 232, 244
AfaI	GTAC	2 cut(s)	431, 784
AgeI	ACCGGT	2 cut(s)	299, 326
AgsI	TTSAA	3 cut(s)	163, 604, 709
AluBI	AGCT	6 cut(s)	68, 74, 250, 395, 630, 763
AluI	AGCT	6 cut(s)	68, 74, 250, 395, 630, 763
Alw21I	GWGCWC	3 cut(s)	307, 334, 358
Alw26I	GTCTC	4 cut(s)	191, 221, 230, 760
Alw44I	GTGCAC	3 cut(s)	303, 330, 354
AlwI	GGATC	1 cut(s)	133
AoxI	GGCC	5 cut(s)	102, 232, 244, 490, 495
ApaLI	GTGCAC	3 cut(s)	303, 330, 354
ApeKI	GCWGC	7 cut(s)	11, 250, 412, 415, 528, 627, 734
AseI	ATTAAT	1 cut(s)	455
AsiGI	ACCGGT	2 cut(s)	299, 326
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	2 cut(s)	491, 496
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	355
BaeGI	GKGCMC	4 cut(s)	307, 334, 358, 689
BalI	TGGCCA	3 cut(s)	104, 234, 246
BauI	CACGAG	1 cut(s)	688
Bbv12I	GWGCWC	3 cut(s)	307, 334, 358
BbvI	GCAGC	6 cut(s)	237, 424, 427, 540, 639, 721
BccI	CCATC	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	4 cut(s)	191, 221, 230, 760
BfaI	CTAG	1 cut(s)	75
BfmI	CTRYAG	1 cut(s)	727
BfoI	RGCGCY	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	390
BisI	GCNGC	7 cut(s)	12, 251, 413, 416, 529, 628, 735
BlsI	GCNGC	7 cut(s)	13, 252, 414, 417, 530, 629, 736
Bme1390I	CCNGG	1 cut(s)	494
BmgT120I	GGNCC	2 cut(s)	491, 496
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	3 cut(s)	53, 598, 661
BpuEI	CTTGAG	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	494
BsaI	GGTCTC	3 cut(s)	191, 221, 230
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	2 cut(s)	299, 326
Bse118I	RCCGGY	2 cut(s)	299, 326
BseDI	CCNNGG	1 cut(s)	235
BseMII	CTCAG	6 cut(s)	387, 449, 579, 666, 737, 755
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	4 cut(s)	307, 334, 358, 689
BseXI	GCAGC	6 cut(s)	237, 424, 427, 540, 639, 721
BseYI	CCCAGC	1 cut(s)	461
BshFI	GGCC	5 cut(s)	104, 234, 246, 492, 497
BshTI	ACCGGT	2 cut(s)	299, 326
BsiHKAI	GWGCWC	3 cut(s)	307, 334, 358
BsiSI	CCGG	3 cut(s)	300, 327, 494
BsmAI	GTCTC	4 cut(s)	191, 221, 230, 760
BsnI	GGCC	5 cut(s)	104, 234, 246, 492, 497
Bso31I	GGTCTC	3 cut(s)	191, 221, 230
Bsp1286I	GDGCHC	4 cut(s)	307, 334, 358, 689
Bsp143I	GATC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	235
BspANI	GGCC	5 cut(s)	104, 234, 246, 492, 497
BspCNI	CTCAG	6 cut(s)	388, 448, 580, 667, 738, 756
BspLI	GGNNCC	1 cut(s)	498
BspMI	ACCTGC	1 cut(s)	390
BspPI	GGATC	1 cut(s)	133
BspTNI	GGTCTC	3 cut(s)	191, 221, 230
BsrFI	RCCGGY	2 cut(s)	299, 326
BssAI	RCCGGY	2 cut(s)	299, 326
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	138
BssSI	CACGAG	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	688
Bst4CI	ACNGT	2 cut(s)	274, 731
Bst6I	CTCTTC	2 cut(s)	38, 59
BstC8I	GCNNGC	2 cut(s)	183, 248
BstDEI	CTNAG	6 cut(s)	396, 435, 588, 675, 746, 764
BstDSI	CCRYGG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	4 cut(s)	191, 221, 230, 760
BstMBI	GATC	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 740
BstSCI	CCNGG	1 cut(s)	492
BstSFI	CTRYAG	1 cut(s)	727
BstSLI	GKGCMC	4 cut(s)	307, 334, 358, 689
BstV1I	GCAGC	6 cut(s)	237, 424, 427, 540, 639, 721
BstX2I	RGATCY	1 cut(s)	138
BstXI	CCANNNNNNTGG	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	138
BsuRI	GGCC	5 cut(s)	104, 234, 246, 492, 497
BtgI	CCRYGG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	736
BveI	ACCTGC	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	183, 248
CfoI	GCGC	1 cut(s)	745
Cfr10I	RCCGGY	2 cut(s)	299, 326
Cfr13I	GGNCC	2 cut(s)	491, 496
Csp6I	GTAC	2 cut(s)	430, 783
CspAI	ACCGGT	2 cut(s)	299, 326
CviAII	CATG	2 cut(s)	236, 485
CviQI	GTAC	2 cut(s)	430, 783
DdeI	CTNAG	6 cut(s)	396, 435, 588, 675, 746, 764
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
EaeI	YGGCCR	3 cut(s)	102, 232, 244
Eam1104I	CTCTTC	2 cut(s)	38, 59
EarI	CTCTTC	2 cut(s)	38, 59
Eco130I	CCWWGG	1 cut(s)	235
Eco31I	GGTCTC	3 cut(s)	191, 221, 230
EcoT14I	CCWWGG	1 cut(s)	235
ErhI	CCWWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	239, 488
FalI	AAGNNNNNCTT	4 cut(s)	458, 490, 584, 616
FatI	CATG	2 cut(s)	235, 484
Fnu4HI	GCNGC	7 cut(s)	12, 251, 413, 416, 529, 628, 735
Fsp4HI	GCNGC	7 cut(s)	12, 251, 413, 416, 529, 628, 735
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	744
GluI	GCNGC	7 cut(s)	12, 251, 413, 416, 529, 628, 735
GsaI	CCCAGC	1 cut(s)	465
HaeII	RGCGCY	1 cut(s)	746
HaeIII	GGCC	5 cut(s)	104, 234, 246, 492, 497
HapII	CCGG	3 cut(s)	300, 327, 494
HhaI	GCGC	1 cut(s)	745
Hin1II	CATG	2 cut(s)	239, 488
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	398
HpaII	CCGG	3 cut(s)	300, 327, 494
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	4 cut(s)	112, 305, 332, 356
Hpy188I	TCNGA	2 cut(s)	403, 438
Hpy188III	TCNNGA	3 cut(s)	194, 218, 813
Hpy8I	GTNNAC	4 cut(s)	112, 305, 332, 356
HpyAV	CCTTC	3 cut(s)	127, 196, 733
HpyCH4III	ACNGT	2 cut(s)	274, 731
HpyCH4V	TGCA	6 cut(s)	14, 44, 305, 332, 356, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 740
HpyF3I	CTNAG	6 cut(s)	396, 435, 588, 675, 746, 764
Hsp92II	CATG	2 cut(s)	239, 488
HspAI	GCGC	1 cut(s)	743
Kzo9I	GATC	1 cut(s)	138
Lsp1109I	GCAGC	6 cut(s)	237, 424, 427, 540, 639, 721
LweI	GCATC	3 cut(s)	53, 598, 661
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	506, 692
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	4 cut(s)	25, 28, 46, 721
MflI	RGATCY	1 cut(s)	138
MhlI	GDGCHC	4 cut(s)	307, 334, 358, 689
MlsI	TGGCCA	3 cut(s)	104, 234, 246
MluCI	AATT	6 cut(s)	17, 86, 359, 452, 556, 646
MluNI	TGGCCA	3 cut(s)	104, 234, 246
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	41, 62, 264, 444
Mox20I	TGGCCA	3 cut(s)	104, 234, 246
MscI	TGGCCA	3 cut(s)	104, 234, 246
MseI	TTAA	2 cut(s)	455, 477
Msp20I	TGGCCA	3 cut(s)	104, 234, 246
MspA1I	CMGCKG	2 cut(s)	250, 395
MspI	CCGG	3 cut(s)	300, 327, 494
MspR9I	CCNGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	2 cut(s)	11, 740
NciI	CCSGG	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	1 cut(s)	138
NlaIII	CATG	2 cut(s)	239, 488
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	2 cut(s)	506, 692
PinAI	ACCGGT	2 cut(s)	299, 326
PkrI	GCNGC	7 cut(s)	13, 252, 414, 417, 530, 629, 736
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	455
PspFI	CCCAGC	1 cut(s)	461
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	2 cut(s)	491, 496
PsuI	RGATCY	1 cut(s)	138
PvuII	CAGCTG	2 cut(s)	250, 395
RsaI	GTAC	2 cut(s)	431, 784
RsaNI	GTAC	2 cut(s)	430, 783
SaqAI	TTAA	2 cut(s)	455, 477
SatI	GCNGC	7 cut(s)	12, 251, 413, 416, 529, 628, 735
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	491, 496
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	4 cut(s)	307, 334, 358, 689
SfaNI	GCATC	3 cut(s)	53, 598, 661
SfcI	CTRYAG	1 cut(s)	727
SgrAI	CRCCGGYG	2 cut(s)	299, 326
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse9I	AATT	6 cut(s)	17, 86, 359, 452, 556, 646
SspMI	CTAG	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	492
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	274, 731
TaqI	TCGA	1 cut(s)	219
TasI	AATT	6 cut(s)	17, 86, 359, 452, 556, 646
Tru1I	TTAA	2 cut(s)	455, 477
Tru9I	TTAA	2 cut(s)	455, 477
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	2 cut(s)	506, 692
TseI	GCWGC	7 cut(s)	11, 250, 412, 415, 528, 627, 734
Tsp45I	GTSAC	2 cut(s)	506, 692
TspDTI	ATGAA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	736
VneI	GTGCAC	3 cut(s)	303, 330, 354
VspI	ATTAAT	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.