AT1G28410

BEST Arabidopsis thaliana protein match is myosin heavy

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005374
Physical Location & Seq
Reverse (-)
9976182 .. 9979793
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28410.2

Sequence Viewer

Length: 834 bp
ATGGGGCTGCATTTGGCTGCTCTGTTTTTCATCATTTCACCACTCTTCGTTTTCTCCTCTCAAGTCCAGCAGCAGATCGGTTCTAATCAGAACTTGATCAATGATCTGGACTCAGCTAAGCTCAGAATATCTCAATTGGAAGCTGTTCTTGAGGCGACAATACAGAAGTTGGATGGTAAGACCCTTTACTTGAAAGAGCGTGAGAAGTTGATCCAAGTTGCTGAAACTCAGATCCTTGATTTGCAGTCTGCTTCATACATTGACAAGAGCGGCTTACCTTTGGTTCAAAAGAGGATAAGCGAGTTAGAAGAAGAGGTGAAACTTCTATGGGCTGCCTTGAGAACAACCAACTTCGAGCTACACGTTTTAGAGGATAAAGCAAGAGAAGCTAAGAATAAACTTAAAGCTAAGGCTTTGGAAGTTGAACAGATGACAGAAGTTGTTACGGAGCAGTGGATTCAGGTTCAACATCTTGAGCAGATGAGAGAATTCAATAACCGAAGGCATCACACACCTAGCAGATGCCCGTTCGTGAAGCTCATGAGCGATATCCAAAGAAAACATCTGCCCAAAGTTGATGAAGCATTTGACATTCACTGGAAGGGAAAGAAGGTTCTCTCTGTGCAACCGTATCTCACAAAAGCCCTGTCACAGTTAAAAAGCCTCTGGGCAGCTGTTACCAAATATCACCACCAGTTGCAAGGCTTCATCGAGCATGAGATGGAAAGAACCGAGATCACAGCGGCTCTCGCAAACAGAGAAGTGGTGTTTTTCATGGCATCTGCACTAATTACCTTCCCAGTGTTTGGAGCATGGATGTTACTCTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.93

Weight (kDa)

7.87

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 806
AccBSI CCGCTC 1 cut(s) 270
AciI CCGC 2 cut(s) 270, 743
AclWI GGATC 2 cut(s) 205, 226
AcsI RAATTY 1 cut(s) 488
AfiI CCNNNNNNNGG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 5 cut(s) 193, 287, 425, 467, 493
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
AluBI AGCT 8 cut(s) 116, 121, 143, 358, 389, 407, 538, 674
AluI AGCT 8 cut(s) 116, 121, 143, 358, 389, 407, 538, 674
AlwI GGATC 2 cut(s) 205, 226
ApeKI GCWGC 5 cut(s) 7, 17, 70, 332, 671
ApoI RAATTY 1 cut(s) 488
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 1 cut(s) 144
AsuHPI GGTGA 3 cut(s) 30, 328, 680
BbvI GCAGC 4 cut(s) 4, 82, 319, 683
BccI CCATC 2 cut(s) 167, 715
BclI TGATCA 1 cut(s) 96
BfaI CTAG 2 cut(s) 516, 832
BisI GCNGC 7 cut(s) 8, 18, 71, 271, 333, 672, 744
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 7 cut(s) 9, 19, 72, 272, 334, 673, 745
BmrI ACTGGG 1 cut(s) 794
BmsI GCATC 3 cut(s) 512, 514, 788
BmuI ACTGGG 1 cut(s) 794
Bpu10I CCTNAGC 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 117
BpuEI CTTGAG 4 cut(s) 45, 170, 358, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse1I ACTGG 3 cut(s) 602, 694, 800
BseGI GGATG 2 cut(s) 178, 822
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMII CTCAG 3 cut(s) 126, 136, 242
BseNI ACTGG 3 cut(s) 602, 694, 800
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 4 cut(s) 4, 82, 319, 683
BsgI GTGCAG 1 cut(s) 768
BslI CCNNNNNNNGG 1 cut(s) 806
Bsp143I GATC 6 cut(s) 75, 96, 103, 210, 231, 735
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 2 cut(s) 270, 743
BspCNI CTCAG 3 cut(s) 125, 135, 241
BspHI TCATGA 1 cut(s) 540
BspPI GGATC 2 cut(s) 205, 226
BsrBI CCGCTC 1 cut(s) 270
BsrI ACTGG 3 cut(s) 602, 694, 800
BssMI GATC 6 cut(s) 75, 96, 103, 210, 231, 735
Bst4CI ACNGT 2 cut(s) 630, 654
Bst6I CTCTTC 2 cut(s) 50, 306
BstDEI CTNAG 6 cut(s) 112, 117, 122, 228, 390, 408
BstF5I GGATG 2 cut(s) 178, 822
BstKTI GATC 6 cut(s) 78, 99, 106, 213, 234, 738
BstMBI GATC 6 cut(s) 75, 96, 103, 210, 231, 735
BstMWI GCNNNNNNNGC 2 cut(s) 386, 749
BstV1I GCAGC 4 cut(s) 4, 82, 319, 683
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BtsCI GGATG 2 cut(s) 178, 822
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 458, 595, 807
CciI TCATGA 1 cut(s) 540
CviAII CATG 4 cut(s) 541, 716, 775, 813
DdeI CTNAG 6 cut(s) 112, 117, 122, 228, 390, 408
DpnI GATC 6 cut(s) 77, 98, 105, 212, 233, 737
DpnII GATC 6 cut(s) 75, 96, 103, 210, 231, 735
Eam1104I CTCTTC 2 cut(s) 50, 306
EarI CTCTTC 2 cut(s) 50, 306
Eco32I GATATC 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 488
EcoRV GATATC 1 cut(s) 550
FaeI CATG 4 cut(s) 544, 719, 778, 816
FaiI YATR 6 cut(s) 256, 328, 542, 717, 776, 814
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 257, 289
FatI CATG 4 cut(s) 540, 715, 774, 812
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 8, 18, 71, 271, 333, 672, 744
FokI GGATG 2 cut(s) 185, 829
Fsp4HI GCNGC 7 cut(s) 8, 18, 71, 271, 333, 672, 744
FspBI CTAG 2 cut(s) 516, 832
GluI GCNGC 7 cut(s) 8, 18, 71, 271, 333, 672, 744
Hin1II CATG 4 cut(s) 544, 719, 778, 816
HinfI GANTC 2 cut(s) 110, 457
HphI GGTGA 3 cut(s) 30, 328, 680
Hpy188I TCNGA 3 cut(s) 90, 125, 231
Hpy188III TCNNGA 5 cut(s) 107, 149, 473, 532, 541
HpyAV CCTTC 4 cut(s) 495, 595, 604, 805
HpyCH4III ACNGT 2 cut(s) 630, 654
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 5 cut(s) 10, 244, 625, 700, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 749
HpyF3I CTNAG 6 cut(s) 112, 117, 122, 228, 390, 408
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 4 cut(s) 544, 719, 778, 816
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 6 cut(s) 75, 96, 103, 210, 231, 735
LmnI GCTCC 2 cut(s) 448, 809
LpnPI CCDG 8 cut(s) 80, 92, 446, 583, 652, 659, 707, 813
Lsp1109I GCAGC 4 cut(s) 4, 82, 319, 683
LweI GCATC 3 cut(s) 512, 514, 788
MaeI CTAG 2 cut(s) 516, 832
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 4 cut(s) 442, 648, 676, 819
MalI GATC 6 cut(s) 77, 98, 105, 212, 233, 737
MbiI CCGCTC 1 cut(s) 270
MboI GATC 6 cut(s) 75, 96, 103, 210, 231, 735
MboII GAAGA 4 cut(s) 37, 320, 323, 819
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 231
MluCI AATT 3 cut(s) 134, 488, 789
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 6 cut(s) 67, 145, 285, 307, 364, 674
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 402, 656
MspA1I CMGCKG 2 cut(s) 674, 743
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 386, 749
NdeII GATC 6 cut(s) 75, 96, 103, 210, 231, 735
NlaIII CATG 4 cut(s) 544, 719, 778, 816
NmuCI GTSAC 1 cut(s) 648
PagI TCATGA 1 cut(s) 540
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 7 cut(s) 9, 19, 72, 272, 334, 673, 745
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 674
SaqAI TTAA 2 cut(s) 402, 656
SatI GCNGC 7 cut(s) 8, 18, 71, 271, 333, 672, 744
Sau3AI GATC 6 cut(s) 75, 96, 103, 210, 231, 735
SchI GAGTC 1 cut(s) 104
SfaNI GCATC 3 cut(s) 512, 514, 788
SmlI CTYRAG 4 cut(s) 60, 149, 337, 473
SmoI CTYRAG 4 cut(s) 60, 149, 337, 473
Sse9I AATT 3 cut(s) 134, 488, 789
SsiI CCGC 2 cut(s) 270, 743
SspMI CTAG 2 cut(s) 516, 832
TaaI ACNGT 2 cut(s) 630, 654
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 354, 711
TasI AATT 3 cut(s) 134, 488, 789
TauI GCSGC 2 cut(s) 273, 746
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 402, 656
Tru9I TTAA 2 cut(s) 402, 656
TscAI CASTG 3 cut(s) 458, 602, 807
TseFI GTSAC 1 cut(s) 648
TseI GCWGC 5 cut(s) 7, 17, 70, 332, 671
Tsp45I GTSAC 1 cut(s) 648
TspDTI ATGAA 5 cut(s) 19, 243, 594, 697, 763
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 3 cut(s) 458, 602, 807
Van91I CCANNNNNTGG 1 cut(s) 806
XapI RAATTY 1 cut(s) 488
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 2 cut(s) 516, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.