Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005923.1

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Forward (+)

16360 .. 19004

Gene Structure 2645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005923.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgagagtagcagcaattcatctaatcccaatcctcttcctctttcccgccttttttccatccctctccgaaaccaccaccgactcctccgtcgtatcccaactccaccaattcaagctcaaaatcgctcatttagaatcggttcttgcggaaagcgttcggaatctgaatgagagaatcgatcaaatcgaacagcgcgagaagcggattgacgacatgtcgcagaagatccaccatttgcaatctctgttatccactctcaaggaacactcattgcatggtgatcaaagacttactgctctagaagaagaggtacggcgtctctgggccgcttcgaggaagaacaatttcgacattcatgttttggagtccaaagcacaagatgctgaggagaggcttgaaatggttacctctaaggctaagaagatgaatgacatggttaccgagcaatggattcaacttcagagactgcagcaggctcttcatattcaacaatcgaggactttgagggttcaaaggcaagtaagctatacaagatgcacattcttgaagttcttcaacaaccttcttgatgaccatttgctgaagctgcttgggtctaacgtgagatcctttttctcacgaaccctgcatcaattggaaagagtctttatagcatttaagaggtctcaccataagttgcagcattccatcaaagaggcattggagaagaatgaatttactgcagctcttgctaatgaggaattggttttctatgtggctactgccctcatcatcttgccgataatgatggcctggatttttctctcctcaaaattccaagctagttgctctattgacgtgacctatatgcactcgcagacctatacaagtcctgagggtgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

295

Amino Acids

34.41

Weight (kDa)

8.48

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	48, 149, 205, 330
AclWI	GGATC	2 cut(s)	223, 603
AcsI	RAATTY	2 cut(s)	716, 815
AcuI	CTGAAG	2 cut(s)	446, 605
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	336, 450
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	7 cut(s)	115, 401, 458, 491, 515, 550, 559
AhdI	GACNNNNNGTC	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	841
AjnI	CCWGG	1 cut(s)	794
AluBI	AGCT	5 cut(s)	118, 528, 589, 728, 824
AluI	AGCT	5 cut(s)	118, 528, 589, 728, 824
Alw26I	GTCTC	3 cut(s)	326, 460, 672
AlwI	GGATC	2 cut(s)	223, 603
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	2 cut(s)	327, 792
ApeKI	GCWGC	5 cut(s)	11, 472, 589, 682, 725
ApoI	RAATTY	2 cut(s)	716, 815
Asp700I	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	293, 662
AxyI	CCTNAGG	1 cut(s)	876
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	5 cut(s)	23, 484, 576, 694, 737
BccI	CCATC	3 cut(s)	67, 698, 784
BceAI	ACGGC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	796
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	326, 460, 672
BfaI	CTAG	2 cut(s)	302, 825
BfmI	CTRYAG	2 cut(s)	470, 723
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	6 cut(s)	12, 330, 473, 590, 683, 726
BlsI	GCNGC	6 cut(s)	13, 331, 474, 591, 684, 727
Bme1390I	CCNGG	1 cut(s)	796
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	841
BmgT120I	GGNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	796
BmsI	GCATC	3 cut(s)	373, 527, 640
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 450
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	2 cut(s)	272, 455
BseBI	CCWGG	1 cut(s)	796
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	336, 450
BseMI	GCAATG	2 cut(s)	272, 455
BseMII	CTCAG	2 cut(s)	378, 867
BseRI	GAGGAG	3 cut(s)	76, 404, 799
BseXI	GCAGC	5 cut(s)	23, 484, 576, 694, 737
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	329, 794
BshVI	ATCGAT	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	336, 450
BsmAI	GTCTC	3 cut(s)	326, 460, 672
BsmBI	CGTCTC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	329, 794
Bso31I	GGTCTC	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	181, 228, 283, 608
BspACI	CCGC	4 cut(s)	48, 149, 205, 330
BspANI	GGCC	2 cut(s)	329, 794
BspCNI	CTCAG	2 cut(s)	379, 868
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	198
BspMAI	CTGCAG	2 cut(s)	474, 727
BspPI	GGATC	2 cut(s)	223, 603
BspQI	GCTCTTC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	672
BsrDI	GCAATG	2 cut(s)	272, 455
BssMI	GATC	4 cut(s)	181, 228, 283, 608
BssNI	GRCGYC	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	796
Bst6I	CTCTTC	3 cut(s)	41, 303, 486
BstACI	GRCGYC	1 cut(s)	319
BstAPI	GCANNNNNTGC	2 cut(s)	383, 731
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	4 cut(s)	387, 414, 420, 876
BstEII	GGTNACC	2 cut(s)	406, 439
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	184, 231, 286, 611
BstMAI	GTCTC	3 cut(s)	326, 460, 672
BstMBI	GATC	4 cut(s)	181, 228, 283, 608
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 383, 589, 731
BstNI	CCWGG	1 cut(s)	796
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	2 cut(s)	406, 439
BstSCI	CCNGG	1 cut(s)	794
BstSFI	CTRYAG	2 cut(s)	470, 723
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	23, 484, 576, 694, 737
BstX2I	RGATCY	2 cut(s)	228, 608
BstYI	RGATCY	2 cut(s)	228, 608
Bsu15I	ATCGAT	1 cut(s)	180
Bsu36I	CCTNAGG	1 cut(s)	876
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	329, 794
BsuTUI	ATCGAT	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	841
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	4 cut(s)	217, 278, 359, 436
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	4 cut(s)	387, 414, 420, 876
DpnI	GATC	4 cut(s)	183, 230, 285, 610
DpnII	GATC	4 cut(s)	181, 228, 283, 608
DrdI	GACNNNNNNGTC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	3 cut(s)	41, 303, 486
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	3 cut(s)	41, 303, 486
Eco31I	GGTCTC	1 cut(s)	672
Eco57I	CTGAAG	2 cut(s)	446, 605
Eco81I	CCTNAGG	1 cut(s)	876
Eco91I	GGTNACC	2 cut(s)	406, 439
EcoO65I	GGTNACC	2 cut(s)	406, 439
EcoRII	CCWGG	1 cut(s)	794
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	4 cut(s)	220, 281, 362, 439
FatI	CATG	4 cut(s)	216, 277, 358, 435
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	6 cut(s)	12, 330, 473, 590, 683, 726
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	6 cut(s)	12, 330, 473, 590, 683, 726
FspBI	CTAG	2 cut(s)	302, 825
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	6 cut(s)	12, 330, 473, 590, 683, 726
HaeIII	GGCC	2 cut(s)	329, 794
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	220, 281, 362, 439
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	7 cut(s)	83, 137, 163, 177, 368, 454, 645
HphI	GGTGA	2 cut(s)	293, 662
Hpy188I	TCNGA	4 cut(s)	70, 162, 168, 465
Hpy188III	TCNNGA	5 cut(s)	302, 547, 569, 621, 875
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	575
HpyCH4IV	ACGT	2 cut(s)	603, 840
HpyCH4V	TGCA	8 cut(s)	241, 277, 472, 540, 631, 682, 725, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 383, 589, 731
HpyF3I	CTNAG	4 cut(s)	387, 414, 420, 876
HpySE526I	ACGT	2 cut(s)	603, 840
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	4 cut(s)	220, 281, 362, 439
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	181, 228, 283, 608
LguI	GCTCTTC	1 cut(s)	486
LpnPI	CCDG	5 cut(s)	310, 461, 641, 781, 808
Lsp1109I	GCAGC	5 cut(s)	23, 484, 576, 694, 737
LweI	GCATC	3 cut(s)	373, 527, 640
MaeI	CTAG	2 cut(s)	302, 825
MaeII	ACGT	2 cut(s)	603, 840
MaeIII	GTNAC	3 cut(s)	406, 439, 841
MalI	GATC	4 cut(s)	183, 230, 285, 610
MboI	GATC	4 cut(s)	181, 228, 283, 608
MboII	GAAGA	9 cut(s)	28, 238, 317, 320, 352, 436, 473, 547, 721
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	2 cut(s)	228, 608
MluCI	AATT	7 cut(s)	15, 110, 346, 635, 716, 743, 815
MlyI	GAGTC	3 cut(s)	77, 377, 654
MroXI	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
MseI	TTAA	1 cut(s)	660
MspR9I	CCNGG	1 cut(s)	796
MunI	CAATTG	1 cut(s)	635
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	796
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	4 cut(s)	202, 383, 589, 731
NdeII	GATC	4 cut(s)	181, 228, 283, 608
NlaIII	CATG	4 cut(s)	220, 281, 362, 439
NmuCI	GTSAC	1 cut(s)	841
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PctI	GAATGC	1 cut(s)	685
PdmI	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
PfeI	GAWTC	4 cut(s)	137, 163, 177, 454
PkrI	GCNGC	6 cut(s)	13, 331, 474, 591, 684, 727
PleI	GAGTC	3 cut(s)	77, 376, 653
PpsI	GAGTC	3 cut(s)	77, 376, 653
PscI	ACATGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	794
PspEI	GGTNACC	2 cut(s)	406, 439
PspGI	CCWGG	1 cut(s)	794
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	2 cut(s)	474, 727
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	228, 608
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	660
SatI	GCNGC	6 cut(s)	12, 330, 473, 590, 683, 726
Sau3AI	GATC	4 cut(s)	181, 228, 283, 608
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	3 cut(s)	77, 377, 654
ScrFI	CCNGG	1 cut(s)	796
SfaNI	GCATC	3 cut(s)	373, 527, 640
SfcI	CTRYAG	2 cut(s)	470, 723
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	7 cut(s)	15, 110, 346, 635, 716, 743, 815
SsiI	CCGC	4 cut(s)	48, 149, 205, 330
SspMI	CTAG	2 cut(s)	302, 825
StyD4I	CCNGG	1 cut(s)	794
TaiI	ACGT	2 cut(s)	606, 843
TaqI	TCGA	5 cut(s)	180, 189, 335, 351, 497
TasI	AATT	7 cut(s)	15, 110, 346, 635, 716, 743, 815
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	137, 163, 177, 454
Tru1I	TTAA	1 cut(s)	660
Tru9I	TTAA	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	5 cut(s)	11, 472, 589, 682, 725
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	5 cut(s)	8, 347, 443, 473, 729
TspGWI	ACGGA	1 cut(s)	79
XapI	RAATTY	2 cut(s)	716, 815
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	1 cut(s)	220
XmnI	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
XspI	CTAG	2 cut(s)	302, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.