Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Reverse (-)

26707401 .. 26711083

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G304000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAGACTCTTAATTCATCTAATTCCATTCGTCTCCCTGTTTCCCGCCTTATTCTCTTCTCTCTTCGCTCCCTCCCAAACAACATGTTCACCTCACCACATCAACGACAACGACGACAATTCCTCCCTCTGCCAACTCCACCAATTCCAGCTCAAGATCGATCACTTAGAATCAGTTCTAGCAGAAAGCATTCAAAACCTGACCGAGAAAATCGATCGTATCGAAGAGCGCGAGAAGCGCATTGACGATATGGCGCAGAAGATCCATCATTTGCAGTCTGTTTTATCCACTCTGAAGGGAGACTCATTGGCTACTGATGAGAGGCTTAAGGCTTTAGAAGAAGAGGTACGGCTTCTGTGGACTGCATCAAGAAAGTACAACTTTGATCTTCATGTTTTAGAGTCTAAAGCACAAGATACTGAGGATAGACTCCAAACGGTTGCCTCTCAGGCTCAAAAGATGGCTGACGTTGTTACAGAACAATGGATTCAAATTCAGCGACTTGAGCAGGCTCTTCATATTACACAAATGAGGACTATGAGGGTTCAAAGACAATTAACAAGATGCATATTCTTGAAGTTCATAAACAACCTTTCTGATGACCCTCTGCTGAAGACGCTTGGGCCTAACTTCAGATCCTATTTCTCTCGAGCTTTGCATCAGTTCAAGAGAGTCTTTGCAGAATTTAAAAGGTCTCACCATGAGTTACAACATTTCATCAAAGAGAAACTGGAAAAGAATGAATTCACAGCAGCTCTTGCAAATGAGGAATTAGTTTTCTTTATGGCTTCCGCATTAATCACCTTCCCAGTAATGAGTGCTTGGATGTTGCTCTCATCAAAACTCACTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

33.12

Weight (kDa)

6.67

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	2 cut(s)	45, 792
AclWI	GGATC	2 cut(s)	256, 630
AcsI	RAATTY	3 cut(s)	492, 683, 743
AcuI	CTGAAG	3 cut(s)	314, 616, 632
AfaI	GTAC	2 cut(s)	348, 377
AflII	CTTAAG	1 cut(s)	326
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	5 cut(s)	194, 491, 548, 577, 667
AluBI	AGCT	4 cut(s)	151, 653, 755, 852
AluI	AGCT	4 cut(s)	151, 653, 755, 852
Alw26I	GTCTC	3 cut(s)	37, 294, 699
AlwI	GGATC	2 cut(s)	256, 630
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	1 cut(s)	623
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	3 cut(s)	492, 683, 743
AseI	ATTAAT	1 cut(s)	797
Asp700I	GAANNNNTTC	3 cut(s)	174, 189, 743
AspLEI	GCGC	3 cut(s)	231, 240, 256
AspS9I	GGNCC	1 cut(s)	623
AsuHPI	GGTGA	4 cut(s)	81, 86, 689, 793
AvaI	CYCGRG	1 cut(s)	648
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BbsI	GAAGAC	1 cut(s)	620
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	2 cut(s)	273, 454
BceAI	ACGGC	1 cut(s)	365
BcoDI	GTCTC	3 cut(s)	37, 294, 699
BfaI	CTAG	2 cut(s)	179, 849
BfrI	CTTAAG	1 cut(s)	326
BglI	GCCNNNNNGGC	1 cut(s)	449
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	1 cut(s)	623
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	3 cut(s)	374, 554, 667
BmuI	ACTGGG	1 cut(s)	803
BpiI	GAAGAC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	137, 524
Bsa29I	ATCGAT	2 cut(s)	159, 213
BsaI	GGTCTC	1 cut(s)	699
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse1I	ACTGG	2 cut(s)	735, 809
BseCI	ATCGAT	2 cut(s)	159, 213
BseGI	GGATG	1 cut(s)	831
BseMII	CTCAG	2 cut(s)	411, 461
BseNI	ACTGG	2 cut(s)	735, 809
BseXI	GCAGC	1 cut(s)	764
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	1 cut(s)	625
BshVI	ATCGAT	2 cut(s)	159, 213
BsiEI	CGRYCG	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	648
BsmAI	GTCTC	3 cut(s)	37, 294, 699
BsmBI	CGTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	625
Bso31I	GGTCTC	1 cut(s)	699
BsoBI	CYCGRG	1 cut(s)	648
Bsp143I	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
BspACI	CCGC	2 cut(s)	45, 792
BspANI	GGCC	1 cut(s)	625
BspCNI	CTCAG	2 cut(s)	412, 460
BspDI	ATCGAT	2 cut(s)	159, 213
BspFNI	CGCG	1 cut(s)	231
BspPI	GGATC	2 cut(s)	256, 630
BspQI	GCTCTTC	2 cut(s)	219, 519
BspTI	CTTAAG	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	699
BsrI	ACTGG	2 cut(s)	735, 809
BssMI	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
Bst4CI	ACNGT	1 cut(s)	439
Bst6I	CTCTTC	5 cut(s)	61, 68, 219, 336, 519
BstAFI	CTTAAG	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	1 cut(s)	510
BstDEI	CTNAG	3 cut(s)	166, 420, 447
BstF5I	GGATG	1 cut(s)	831
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	231, 240, 256
BstKTI	GATC	6 cut(s)	159, 163, 217, 264, 388, 638
BstMAI	GTCTC	3 cut(s)	37, 294, 699
BstMBI	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	6 cut(s)	235, 237, 449, 505, 616, 758
BstNSI	RCATGY	1 cut(s)	87
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	764
BstV2I	GAAGAC	1 cut(s)	620
BstX2I	RGATCY	2 cut(s)	261, 635
BstYI	RGATCY	2 cut(s)	261, 635
Bsu15I	ATCGAT	2 cut(s)	159, 213
BsuRI	GGCC	1 cut(s)	625
BsuTUI	ATCGAT	2 cut(s)	159, 213
BtsCI	GGATG	1 cut(s)	831
Cac8I	GCNNGC	1 cut(s)	510
CfoI	GCGC	3 cut(s)	231, 240, 256
Cfr13I	GGNCC	1 cut(s)	623
ClaI	ATCGAT	2 cut(s)	159, 213
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	347, 376
CviAII	CATG	3 cut(s)	84, 392, 701
CviQI	GTAC	2 cut(s)	347, 376
DdeI	CTNAG	3 cut(s)	166, 420, 447
DpnI	GATC	6 cut(s)	158, 162, 216, 263, 387, 637
DpnII	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
DraI	TTTAAA	1 cut(s)	688
Eam1104I	CTCTTC	5 cut(s)	61, 68, 219, 336, 519
EarI	CTCTTC	5 cut(s)	61, 68, 219, 336, 519
Eco31I	GGTCTC	1 cut(s)	699
Eco57I	CTGAAG	3 cut(s)	314, 616, 632
Eco88I	CYCGRG	1 cut(s)	648
EcoRI	GAATTC	1 cut(s)	743
EcoT22I	ATGCAT	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	3 cut(s)	87, 395, 704
FaiI	YATR	9 cut(s)	85, 251, 393, 519, 539, 569, 584, 702, 785
FalI	AAGNNNNNCTT	4 cut(s)	365, 397, 659, 691
FatI	CATG	3 cut(s)	83, 391, 700
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	1 cut(s)	838
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	2 cut(s)	179, 849
GlaI	GCGC	3 cut(s)	230, 239, 255
GluI	GCNGC	1 cut(s)	753
HaeIII	GGCC	1 cut(s)	625
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	3 cut(s)	231, 240, 256
Hin1II	CATG	3 cut(s)	87, 395, 704
Hin6I	GCGC	3 cut(s)	229, 238, 254
HinP1I	GCGC	3 cut(s)	229, 238, 254
HinfI	GANTC	7 cut(s)	6, 170, 302, 401, 429, 487, 672
HphI	GGTGA	4 cut(s)	81, 86, 689, 793
Hpy166II	GTNNAC	2 cut(s)	89, 360
Hpy188I	TCNGA	3 cut(s)	294, 598, 635
Hpy188III	TCNNGA	5 cut(s)	154, 369, 574, 648, 667
Hpy8I	GTNNAC	2 cut(s)	89, 360
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	289, 814
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	6 cut(s)	274, 365, 567, 658, 680, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	235, 237, 449, 505, 616, 758
HpyF3I	CTNAG	3 cut(s)	166, 420, 447
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	3 cut(s)	87, 395, 704
HspAI	GCGC	3 cut(s)	229, 238, 254
Kzo9I	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
LguI	GCTCTTC	2 cut(s)	219, 519
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	7 cut(s)	50, 161, 212, 434, 494, 716, 822
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	3 cut(s)	374, 554, 667
MaeI	CTAG	2 cut(s)	179, 849
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	472, 705
MalI	GATC	6 cut(s)	158, 162, 216, 263, 387, 637
MboI	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
MboII	GAAGA	9 cut(s)	48, 55, 236, 271, 350, 353, 380, 506, 625
MflI	RGATCY	2 cut(s)	261, 635
MluCI	AATT	9 cut(s)	12, 21, 118, 143, 492, 554, 683, 743, 770
MlyI	GAGTC	4 cut(s)	296, 410, 423, 681
Mph1103I	ATGCAT	1 cut(s)	569
MroXI	GAANNNNTTC	3 cut(s)	174, 189, 743
MseI	TTAA	5 cut(s)	11, 327, 557, 687, 797
MspCI	CTTAAG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	189
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	6 cut(s)	235, 237, 449, 505, 616, 758
NdeII	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
NlaIII	CATG	3 cut(s)	87, 395, 704
NsiI	ATGCAT	1 cut(s)	569
NspI	RCATGY	1 cut(s)	87
PaeR7I	CTCGAG	1 cut(s)	648
PciI	ACATGT	1 cut(s)	83
PciSI	GCTCTTC	2 cut(s)	219, 519
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 219, 228
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	3 cut(s)	174, 189, 743
PfeI	GAWTC	2 cut(s)	170, 487
PkrI	GCNGC	1 cut(s)	754
Ple19I	CGATCG	1 cut(s)	217
PleI	GAGTC	4 cut(s)	296, 409, 423, 680
PpsI	GAGTC	4 cut(s)	296, 409, 423, 680
PscI	ACATGT	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	797
PspPI	GGNCC	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	261, 635
PvuI	CGATCG	1 cut(s)	217
RsaI	GTAC	2 cut(s)	348, 377
RsaNI	GTAC	2 cut(s)	347, 376
SapI	GCTCTTC	2 cut(s)	219, 519
SaqAI	TTAA	5 cut(s)	11, 327, 557, 687, 797
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	6 cut(s)	156, 160, 214, 261, 385, 635
Sau96I	GGNCC	1 cut(s)	623
SchI	GAGTC	4 cut(s)	296, 410, 423, 681
SfaNI	GCATC	3 cut(s)	374, 554, 667
Sfr274I	CTCGAG	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	648
SmlI	CTYRAG	4 cut(s)	152, 326, 503, 648
SmoI	CTYRAG	4 cut(s)	152, 326, 503, 648
Sse9I	AATT	9 cut(s)	12, 21, 118, 143, 492, 554, 683, 743, 770
SsiI	CCGC	2 cut(s)	45, 792
SspMI	CTAG	2 cut(s)	179, 849
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	4 cut(s)	159, 213, 222, 649
TaqII	GACCGA	1 cut(s)	218
TasI	AATT	9 cut(s)	12, 21, 118, 143, 492, 554, 683, 743, 770
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	2 cut(s)	170, 487
Tru1I	TTAA	5 cut(s)	11, 327, 557, 687, 797
Tru9I	TTAA	5 cut(s)	11, 327, 557, 687, 797
TseI	GCWGC	1 cut(s)	752
TspDTI	ATGAA	6 cut(s)	5, 380, 506, 571, 706, 756
Vha464I	CTTAAG	1 cut(s)	326
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	3 cut(s)	492, 683, 743
XceI	RCATGY	1 cut(s)	87
XhoI	CTCGAG	1 cut(s)	648
XmnI	GAANNNNTTC	3 cut(s)	174, 189, 743
XspI	CTAG	2 cut(s)	179, 849
Zsp2I	ATGCAT	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.