nuclear pore organization
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28410 AT1G28410 |
| fragaria_vesca | FvH4_3g08660 FvH4_3g08660 |
| malus_domestica | MD10G1289400.v1.1 |
| prunus_persica | Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1 |
| pyrus_communis | pycom10g24200 |
| rosa_chinensis | RchiOBHm_Chr5g0009131 |
| rosa_laevigata | RLG00000031632 |
| rosa_multiflora | Rmu_sc0005923.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00066870 Rroxscaffold_1G00067570 |
| rosa_rugosa | Rorug04G0441400 |
| rosa_samantha | Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300 |
| rosa_wichuraiana | Rw5G006610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 377 |
| AciI | CCGC | 2 cut(s) | 45, 322 |
| AclWI | GGATC | 2 cut(s) | 319, 332 |
| AcsI | RAATTY | 1 cut(s) | 369 |
| AfaI | GTAC | 2 cut(s) | 305, 391 |
| AflIII | ACRYGT | 1 cut(s) | 83 |
| AgsI | TTSAA | 1 cut(s) | 164 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| Alw26I | GTCTC | 1 cut(s) | 201 |
| AlwI | GGATC | 2 cut(s) | 319, 332 |
| Ama87I | CYCGRG | 1 cut(s) | 336 |
| AoxI | GGCC | 1 cut(s) | 454 |
| ApoI | RAATTY | 1 cut(s) | 369 |
| AspS9I | GGNCC | 1 cut(s) | 454 |
| AsuHPI | GGTGA | 1 cut(s) | 86 |
| AsuII | TTCGAA | 1 cut(s) | 366 |
| AvaI | CYCGRG | 1 cut(s) | 336 |
| BamHI | GGATCC | 1 cut(s) | 324 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 171, 203 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BclI | TGATCA | 1 cut(s) | 246 |
| BcoDI | GTCTC | 1 cut(s) | 201 |
| Bme1390I | CCNGG | 1 cut(s) | 329 |
| BmeT110I | CYCGRG | 1 cut(s) | 336 |
| BmgT120I | GGNCC | 1 cut(s) | 454 |
| BmiI | GGNNCC | 1 cut(s) | 326 |
| BmrFI | CCNGG | 1 cut(s) | 329 |
| BmrI | ACTGGG | 1 cut(s) | 426 |
| BmuI | ACTGGG | 1 cut(s) | 426 |
| Bpu14I | TTCGAA | 1 cut(s) | 366 |
| BpuEI | CTTGAG | 1 cut(s) | 331 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 342 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 95, 98, 125, 128 |
| Bse1I | ACTGG | 1 cut(s) | 421 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseDI | CCNNGG | 2 cut(s) | 174, 342 |
| BseGI | GGATG | 1 cut(s) | 244 |
| BseNI | ACTGG | 1 cut(s) | 421 |
| BseRI | GAGGAG | 1 cut(s) | 103 |
| BshFI | GGCC | 1 cut(s) | 456 |
| BsiHKCI | CYCGRG | 1 cut(s) | 336 |
| BsmAI | GTCTC | 1 cut(s) | 201 |
| BsnI | GGCC | 1 cut(s) | 456 |
| BsoBI | CYCGRG | 1 cut(s) | 336 |
| Bsp119I | TTCGAA | 1 cut(s) | 366 |
| Bsp143I | GATC | 2 cut(s) | 246, 324 |
| BspACI | CCGC | 2 cut(s) | 45, 322 |
| BspANI | GGCC | 1 cut(s) | 456 |
| BspLI | GGNNCC | 1 cut(s) | 326 |
| BspPI | GGATC | 2 cut(s) | 319, 332 |
| BspT104I | TTCGAA | 1 cut(s) | 366 |
| BsrI | ACTGG | 1 cut(s) | 421 |
| BssECI | CCNNGG | 2 cut(s) | 174, 342 |
| BssMI | GATC | 2 cut(s) | 246, 324 |
| BssT1I | CCWWGG | 1 cut(s) | 342 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| Bst4CI | ACNGT | 1 cut(s) | 354 |
| Bst6I | CTCTTC | 1 cut(s) | 61 |
| BstBI | TTCGAA | 1 cut(s) | 366 |
| BstF5I | GGATG | 1 cut(s) | 244 |
| BstKTI | GATC | 2 cut(s) | 249, 327 |
| BstMAI | GTCTC | 1 cut(s) | 201 |
| BstMBI | GATC | 2 cut(s) | 246, 324 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstSCI | CCNGG | 1 cut(s) | 327 |
| BstX2I | RGATCY | 1 cut(s) | 324 |
| BstYI | RGATCY | 1 cut(s) | 324 |
| BsuRI | GGCC | 1 cut(s) | 456 |
| BtsCI | GGATG | 1 cut(s) | 244 |
| BtsIMutI | CAGTG | 3 cut(s) | 323, 359, 414 |
| Cfr13I | GGNCC | 1 cut(s) | 454 |
| Csp6I | GTAC | 2 cut(s) | 304, 390 |
| CviJI | RGCY | 3 cut(s) | 170, 341, 456 |
| CviKI_1 | RGCY | 3 cut(s) | 170, 341, 456 |
| CviQI | GTAC | 2 cut(s) | 304, 390 |
| DpnI | GATC | 2 cut(s) | 248, 326 |
| DpnII | GATC | 2 cut(s) | 246, 324 |
| Eam1104I | CTCTTC | 1 cut(s) | 61 |
| EarI | CTCTTC | 1 cut(s) | 61 |
| EciI | GGCGGA | 1 cut(s) | 337 |
| Eco130I | CCWWGG | 1 cut(s) | 342 |
| Eco88I | CYCGRG | 1 cut(s) | 336 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| EcoT14I | CCWWGG | 1 cut(s) | 342 |
| ErhI | CCWWGG | 1 cut(s) | 342 |
| FaiI | YATR | 6 cut(s) | 212, 254, 377, 398, 411, 423 |
| FauI | CCCGC | 1 cut(s) | 52 |
| FbaI | TGATCA | 1 cut(s) | 246 |
| FokI | GGATG | 1 cut(s) | 251 |
| HaeIII | GGCC | 1 cut(s) | 456 |
| HinfI | GANTC | 4 cut(s) | 6, 182, 313, 332 |
| HphI | GGTGA | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 1 cut(s) | 89 |
| Hpy188I | TCNGA | 2 cut(s) | 286, 297 |
| Hpy188III | TCNNGA | 3 cut(s) | 161, 225, 336 |
| Hpy8I | GTNNAC | 1 cut(s) | 89 |
| Hpy99I | CGWCG | 1 cut(s) | 107 |
| HpyCH4III | ACNGT | 1 cut(s) | 354 |
| HpyCH4IV | ACGT | 1 cut(s) | 85 |
| HpySE526I | ACGT | 1 cut(s) | 85 |
| Ksp22I | TGATCA | 1 cut(s) | 246 |
| Kzo9I | GATC | 2 cut(s) | 246, 324 |
| LpnPI | CCDG | 6 cut(s) | 50, 131, 215, 314, 341, 402 |
| MaeII | ACGT | 1 cut(s) | 85 |
| MaeIII | GTNAC | 3 cut(s) | 148, 348, 412 |
| MalI | GATC | 2 cut(s) | 248, 326 |
| MboI | GATC | 2 cut(s) | 246, 324 |
| MboII | GAAGA | 2 cut(s) | 48, 191 |
| MflI | RGATCY | 1 cut(s) | 324 |
| MluCI | AATT | 5 cut(s) | 12, 21, 369, 379, 438 |
| MlyI | GAGTC | 1 cut(s) | 322 |
| MnlI | CCTC | 4 cut(s) | 41, 124, 169, 226 |
| MseI | TTAA | 5 cut(s) | 11, 405, 437, 441, 466 |
| MspR9I | CCNGG | 1 cut(s) | 329 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| NdeII | GATC | 2 cut(s) | 246, 324 |
| NlaIV | GGNNCC | 1 cut(s) | 326 |
| NmeAIII | GCCGAG | 1 cut(s) | 241 |
| NmuCI | GTSAC | 3 cut(s) | 148, 348, 412 |
| NspV | TTCGAA | 1 cut(s) | 366 |
| PacI | TTAATTAA | 1 cut(s) | 441 |
| PaeR7I | CTCGAG | 1 cut(s) | 336 |
| PfeI | GAWTC | 2 cut(s) | 182, 332 |
| PfoI | TCCNGGA | 1 cut(s) | 327 |
| PleI | GAGTC | 1 cut(s) | 321 |
| PpsI | GAGTC | 1 cut(s) | 321 |
| PsiI | TTATAA | 1 cut(s) | 377 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 1 cut(s) | 326 |
| PspPI | GGNCC | 1 cut(s) | 454 |
| PsuI | RGATCY | 1 cut(s) | 324 |
| RsaI | GTAC | 2 cut(s) | 305, 391 |
| RsaNI | GTAC | 2 cut(s) | 304, 390 |
| SaqAI | TTAA | 5 cut(s) | 11, 405, 437, 441, 466 |
| Sau3AI | GATC | 2 cut(s) | 246, 324 |
| Sau96I | GGNCC | 1 cut(s) | 454 |
| SchI | GAGTC | 1 cut(s) | 322 |
| ScrFI | CCNGG | 1 cut(s) | 329 |
| SetI | ASST | 5 cut(s) | 88, 237, 305, 436, 464 |
| Sfr274I | CTCGAG | 1 cut(s) | 336 |
| SfuI | TTCGAA | 1 cut(s) | 366 |
| SlaI | CTCGAG | 1 cut(s) | 336 |
| SmlI | CTYRAG | 2 cut(s) | 310, 336 |
| SmoI | CTYRAG | 2 cut(s) | 310, 336 |
| Sse9I | AATT | 5 cut(s) | 12, 21, 369, 379, 438 |
| SsiI | CCGC | 2 cut(s) | 45, 322 |
| SspI | AATATT | 1 cut(s) | 292 |
| StyD4I | CCNGG | 1 cut(s) | 327 |
| StyI | CCWWGG | 1 cut(s) | 342 |
| TaaI | ACNGT | 1 cut(s) | 354 |
| TaiI | ACGT | 1 cut(s) | 88 |
| TaqI | TCGA | 2 cut(s) | 337, 366 |
| TasI | AATT | 5 cut(s) | 12, 21, 369, 379, 438 |
| TatI | WGTACW | 1 cut(s) | 389 |
| TfiI | GAWTC | 2 cut(s) | 182, 332 |
| Tru1I | TTAA | 5 cut(s) | 11, 405, 437, 441, 466 |
| Tru9I | TTAA | 5 cut(s) | 11, 405, 437, 441, 466 |
| TscAI | CASTG | 3 cut(s) | 323, 359, 421 |
| TseFI | GTSAC | 3 cut(s) | 148, 348, 412 |
| Tsp45I | GTSAC | 3 cut(s) | 148, 348, 412 |
| TspDTI | ATGAA | 4 cut(s) | 5, 231, 255, 267 |
| TspRI | CASTG | 3 cut(s) | 323, 359, 421 |
| XapI | RAATTY | 1 cut(s) | 369 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 125 |
| XhoI | CTCGAG | 1 cut(s) | 336 |