Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Forward (+)

88343990 .. 88348071

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAGAGTATCAGCAATTCATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCTCTCTCCGAAACCACCAACGACTCCTCCTCCTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCGCAGAATCACTCATTTAGAATCGGTTCTTGCGGAAAGCGTTCGGAATCTGAATGAAAGAATCGATCAAATCGAACAGCGTGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCATTTGCAATCTGTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCGTCTCTGGGCTGCTTCAAGGAAGAACAATTTCGATATTCATGTTTTGGAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTTCCTCTAAGGCTGAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAGGCTCTTCATATTCAACAAGTATTTCCTCCTTCAAACTGGCTTGGCATTCCTTATTTGATGCATTCTGCTGGTTCACTGATAGTTTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGCTGCTTGGGTCTAACGTGAGATCCTTTTTCTCACGAACCCTGCATCAATTGGAAAGAGTCTTTATAGCATTTAAGAGTTCTCACCATAAGTTGCAGCATTCCATCAAAGAGGCATTGGAGAAGAATGAATTTACGGCAGCTCTTGCTAATGAGGAATTGGTTTTCTATGTGGCTACTGCCCTCATCATCTTGCCAATAATGATGGCCTGGATGTTTCTCTCCTCAAAATTCCAAGCTAGTTGCTCTCTTGACGTGTCCTATATGCACTCGCAGACCTATACAAGTCCTGCGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

34.74

Weight (kDa)

6.46

Isoelectric Point (pI)

61.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	48, 158, 214, 896
AclWI	GGATC	2 cut(s)	232, 621
AcsI	RAATTY	2 cut(s)	734, 833
AcuI	CTGAAG	2 cut(s)	455, 623
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	2 cut(s)	225, 858
AgsI	TTSAA	7 cut(s)	124, 345, 410, 467, 500, 519, 577
AhdI	GACNNNNNGTC	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	859
AjnI	CCWGG	1 cut(s)	812
AluBI	AGCT	3 cut(s)	607, 746, 842
AluI	AGCT	3 cut(s)	607, 746, 842
Alw26I	GTCTC	2 cut(s)	335, 469
AlwI	GGATC	2 cut(s)	232, 621
AlwNI	CAGNNNCTG	1 cut(s)	478
AoxI	GGCC	1 cut(s)	810
ApeKI	GCWGC	5 cut(s)	338, 481, 607, 700, 743
ApoI	RAATTY	2 cut(s)	734, 833
Asp700I	GAANNNNTTC	3 cut(s)	150, 165, 356
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	302, 680
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	5 cut(s)	325, 493, 594, 712, 755
BccI	CCATC	3 cut(s)	67, 716, 802
BceAI	ACGGC	2 cut(s)	341, 756
BciT130I	CCWGG	1 cut(s)	814
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	335, 469
BfaI	CTAG	2 cut(s)	311, 843
BfmI	CTRYAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	6 cut(s)	339, 482, 608, 701, 744, 897
BlsI	GCNGC	6 cut(s)	340, 483, 609, 702, 745, 898
Bme1390I	CCNGG	1 cut(s)	814
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	859
BmrFI	CCNGG	1 cut(s)	814
BmsI	GCATC	3 cut(s)	382, 534, 658
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	328
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 74, 101, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	281, 464
BseBI	CCWGG	1 cut(s)	814
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	281, 464
BseMII	CTCAG	2 cut(s)	387, 420
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	6 cut(s)	76, 79, 82, 85, 413, 817
BseXI	GCAGC	5 cut(s)	325, 493, 594, 712, 755
BshFI	GGCC	1 cut(s)	812
BshVI	ATCGAT	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	335, 469
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	3 cut(s)	531, 547, 703
BsnI	GGCC	1 cut(s)	812
Bsp143I	GATC	4 cut(s)	190, 237, 292, 626
BspACI	CCGC	4 cut(s)	48, 158, 214, 896
BspANI	GGCC	1 cut(s)	812
BspCNI	CTCAG	2 cut(s)	388, 421
BspDI	ATCGAT	1 cut(s)	189
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	2 cut(s)	232, 621
BspQI	GCTCTTC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	281, 464
BsrI	ACTGG	1 cut(s)	527
BssMI	GATC	4 cut(s)	190, 237, 292, 626
BssNI	GRCGYC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	814
Bst6I	CTCTTC	3 cut(s)	41, 312, 495
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	2 cut(s)	392, 749
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	3 cut(s)	396, 423, 429
BstEII	GGTNACC	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	822
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	193, 240, 295, 629
BstMAI	GTCTC	2 cut(s)	335, 469
BstMBI	GATC	4 cut(s)	190, 237, 292, 626
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 392, 607, 749
BstNI	CCWGG	1 cut(s)	814
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	448
BstSCI	CCNGG	1 cut(s)	812
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	5 cut(s)	325, 493, 594, 712, 755
BstX2I	RGATCY	2 cut(s)	237, 626
BstYI	RGATCY	2 cut(s)	237, 626
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	812
BsuTUI	ATCGAT	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	859
BtsCI	GGATG	1 cut(s)	822
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	1 cut(s)	486
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	226, 287, 368, 445
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	3 cut(s)	396, 423, 429
DpnI	GATC	4 cut(s)	192, 239, 294, 628
DpnII	GATC	4 cut(s)	190, 237, 292, 626
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	3 cut(s)	41, 312, 495
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	3 cut(s)	41, 312, 495
Eco57I	CTGAAG	2 cut(s)	455, 623
Eco91I	GGTNACC	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	812
EcoT22I	ATGCAT	1 cut(s)	549
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	4 cut(s)	229, 290, 371, 448
FatI	CATG	4 cut(s)	225, 286, 367, 444
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	6 cut(s)	339, 482, 608, 701, 744, 897
FokI	GGATG	1 cut(s)	829
Fsp4HI	GCNGC	6 cut(s)	339, 482, 608, 701, 744, 897
FspBI	CTAG	2 cut(s)	311, 843
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	6 cut(s)	339, 482, 608, 701, 744, 897
HaeIII	GGCC	1 cut(s)	812
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	4 cut(s)	229, 290, 371, 448
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	8 cut(s)	83, 132, 146, 172, 186, 377, 463, 663
HphI	GGTGA	2 cut(s)	302, 680
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	4 cut(s)	70, 171, 177, 474
Hpy188III	TCNNGA	4 cut(s)	311, 587, 639, 854
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	525, 593
HpyCH4IV	ACGT	2 cut(s)	621, 858
HpyCH4V	TGCA	7 cut(s)	250, 286, 481, 547, 649, 700, 871
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 392, 607, 749
HpyF3I	CTNAG	3 cut(s)	396, 423, 429
HpySE526I	ACGT	2 cut(s)	621, 858
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	229, 290, 371, 448
HspAI	GCGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	190, 237, 292, 626
LguI	GCTCTTC	1 cut(s)	495
LpnPI	CCDG	7 cut(s)	319, 470, 508, 540, 659, 799, 826
Lsp1109I	GCAGC	5 cut(s)	325, 493, 594, 712, 755
LweI	GCATC	3 cut(s)	382, 534, 658
MaeI	CTAG	2 cut(s)	311, 843
MaeII	ACGT	2 cut(s)	621, 858
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	4 cut(s)	192, 239, 294, 628
MboI	GATC	4 cut(s)	190, 237, 292, 626
MboII	GAAGA	9 cut(s)	28, 247, 326, 329, 361, 445, 482, 565, 739
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	2 cut(s)	237, 626
MluCI	AATT	7 cut(s)	15, 119, 355, 653, 734, 761, 833
MlyI	GAGTC	3 cut(s)	77, 386, 672
Mph1103I	ATGCAT	1 cut(s)	549
MroXI	GAANNNNTTC	3 cut(s)	150, 165, 356
MseI	TTAA	2 cut(s)	303, 678
MspR9I	CCNGG	1 cut(s)	814
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	3 cut(s)	531, 547, 703
MvaI	CCWGG	1 cut(s)	814
MwoI	GCNNNNNNNGC	4 cut(s)	211, 392, 607, 749
NdeII	GATC	4 cut(s)	190, 237, 292, 626
NlaIII	CATG	4 cut(s)	229, 290, 371, 448
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	3 cut(s)	531, 547, 703
PdmI	GAANNNNTTC	3 cut(s)	150, 165, 356
PfeI	GAWTC	5 cut(s)	132, 146, 172, 186, 463
PkrI	GCNGC	6 cut(s)	340, 483, 609, 702, 745, 898
PleI	GAGTC	3 cut(s)	77, 385, 671
PpsI	GAGTC	3 cut(s)	77, 385, 671
PscI	ACATGT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	812
PspEI	GGTNACC	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	812
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	237, 626
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	2 cut(s)	303, 678
SatI	GCNGC	6 cut(s)	339, 482, 608, 701, 744, 897
Sau3AI	GATC	4 cut(s)	190, 237, 292, 626
SchI	GAGTC	3 cut(s)	77, 386, 672
ScrFI	CCNGG	1 cut(s)	814
SetI	ASST	8 cut(s)	324, 585, 609, 624, 748, 844, 861, 884
SfaNI	GCATC	3 cut(s)	382, 534, 658
SfcI	CTRYAG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	7 cut(s)	15, 119, 355, 653, 734, 761, 833
SsiI	CCGC	4 cut(s)	48, 158, 214, 896
SspMI	CTAG	2 cut(s)	311, 843
StyD4I	CCNGG	1 cut(s)	812
TaiI	ACGT	2 cut(s)	624, 861
TaqI	TCGA	3 cut(s)	189, 198, 360
TasI	AATT	7 cut(s)	15, 119, 355, 653, 734, 761, 833
TauI	GCSGC	1 cut(s)	899
TfiI	GAWTC	5 cut(s)	132, 146, 172, 186, 463
Tru1I	TTAA	2 cut(s)	303, 678
Tru9I	TTAA	2 cut(s)	303, 678
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	5 cut(s)	338, 481, 607, 700, 743
TspDTI	ATGAA	6 cut(s)	8, 195, 356, 452, 482, 747
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	1 cut(s)	567
XapI	RAATTY	2 cut(s)	734, 833
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	3 cut(s)	150, 165, 356
XspI	CTAG	2 cut(s)	311, 843
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.