Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Forward (+)

88853336 .. 88857316

Gene Structure 3981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGAGTATCAGCAATTCATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCTCTCTCCGAAACCACCAACGACTCCTCCTCCTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCGCAGAATCACTCATTTAGAATCGGTTCTTGCGGAAAGCGTTCGGAATCTGAATGAAAGAATCGATCAAATCGAACAGCGTGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCATTTGCAATCTGTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCGTCTCTGGGCTGCTTCAAGGAAGAACAATTTCGATATTCATGTTTTGGAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTTCCTCTAAGGCTGAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAGGCTCTTCATATTCAACAAGTATTTCCTCCTTCAAACTGGCTTGGCATTCCTTATTTGATGCATTCTGCTGGTTCACTGATAGTTTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGCTGCTTGGGTCTAACGTGAGATCCTTTTTCTCACGAACCCTGCATCAATTGGAAAGAGTCTTTATAGCATTTAAGAGTTCTCACCATAAGTTGCAGCATTCCATCAAAGAGGCATTGGAGAAGAATGAATTTACGGCGGCTCTTGCTAATGAGGAATTGGTTTTCTATGTGATCCCGCCACCATTGATTCTTGCTAAAGGAGTAGAGGAAGCTCAGTGGGATCCAGAGCAGAAGAGACTGTACTTTAGGAAGAGGCTGAGAAGAAAACGCTTTGCGCCTGATGTTAATCCTTGGATTCCTTTTCTAATTCCCAATATGTTGTTGTTATCTCTTCTTCTCTGGAACCCATATCCCGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

37.7

Weight (kDa)

8.03

Isoelectric Point (pI)

60.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	48, 158, 214, 743, 782
AclWI	GGATC	5 cut(s)	232, 621, 772, 821, 834
AcsI	RAATTY	1 cut(s)	734
AcuI	CTGAAG	2 cut(s)	455, 623
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	2 cut(s)	324, 848
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	7 cut(s)	124, 345, 410, 467, 500, 519, 577
AhdI	GACNNNNNGTC	1 cut(s)	226
AluBI	AGCT	2 cut(s)	607, 818
AluI	AGCT	2 cut(s)	607, 818
Alw26I	GTCTC	3 cut(s)	335, 469, 835
AlwI	GGATC	5 cut(s)	232, 621, 772, 821, 834
AlwNI	CAGNNNCTG	1 cut(s)	478
ApeKI	GCWGC	4 cut(s)	338, 481, 607, 700
ApoI	RAATTY	1 cut(s)	734
Asp700I	GAANNNNTTC	3 cut(s)	150, 165, 356
AspLEI	GCGC	2 cut(s)	129, 883
AsuHPI	GGTGA	2 cut(s)	302, 680
BamHI	GGATCC	1 cut(s)	826
BarI	GAAGNNNNNNTAC	4 cut(s)	306, 338, 830, 862
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	325, 493, 594, 712
BccI	CCATC	2 cut(s)	67, 716
BceAI	ACGGC	2 cut(s)	341, 756
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	3 cut(s)	335, 469, 835
BfaI	CTAG	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	479
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	5 cut(s)	339, 482, 608, 701, 744
BlsI	GCNGC	5 cut(s)	340, 483, 609, 702, 745
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmiI	GGNNCC	2 cut(s)	828, 950
BmsI	GCATC	3 cut(s)	382, 534, 658
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	891
BsaHI	GRCGYC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	896
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 74, 101, 104
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	527
Bse3DI	GCAATG	2 cut(s)	281, 464
Bse8I	GATNNNNATC	1 cut(s)	891
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	896
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	281, 464
BseMII	CTCAG	4 cut(s)	387, 420, 833, 854
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	5 cut(s)	76, 79, 82, 85, 413
BseXI	GCAGC	4 cut(s)	325, 493, 594, 712
BshVI	ATCGAT	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	3 cut(s)	335, 469, 835
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	3 cut(s)	531, 547, 703
Bsp143I	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
BspACI	CCGC	5 cut(s)	48, 158, 214, 743, 782
BspCNI	CTCAG	4 cut(s)	388, 421, 832, 855
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	828, 950
BspMAI	CTGCAG	1 cut(s)	483
BspPI	GGATC	5 cut(s)	232, 621, 772, 821, 834
BspQI	GCTCTTC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	281, 464
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	1 cut(s)	896
BssMI	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
BssNI	GRCGYC	1 cut(s)	328
BssT1I	CCWWGG	1 cut(s)	896
Bst4CI	ACNGT	1 cut(s)	846
Bst6I	CTCTTC	6 cut(s)	41, 312, 495, 833, 851, 942
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	5 cut(s)	396, 423, 429, 819, 863
BstEII	GGTNACC	1 cut(s)	448
BstHHI	GCGC	2 cut(s)	129, 883
BstKTI	GATC	6 cut(s)	193, 240, 295, 629, 780, 829
BstMAI	GTCTC	3 cut(s)	335, 469, 835
BstMBI	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 392, 607, 749
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	479
BstV1I	GCAGC	4 cut(s)	325, 493, 594, 712
BstX2I	RGATCY	3 cut(s)	237, 626, 826
BstYI	RGATCY	3 cut(s)	237, 626, 826
Bsu15I	ATCGAT	1 cut(s)	189
BsuI	GTATCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	560, 827
Cac8I	GCNNGC	1 cut(s)	486
CaiI	CAGNNNCTG	1 cut(s)	478
CfoI	GCGC	2 cut(s)	129, 883
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	323, 847
CviAII	CATG	4 cut(s)	226, 287, 368, 445
CviJI	RGCY	9 cut(s)	338, 406, 428, 488, 526, 607, 746, 818, 862
CviKI_1	RGCY	9 cut(s)	338, 406, 428, 488, 526, 607, 746, 818, 862
CviQI	GTAC	2 cut(s)	323, 847
DdeI	CTNAG	5 cut(s)	396, 423, 429, 819, 863
DpnI	GATC	6 cut(s)	192, 239, 294, 628, 779, 828
DpnII	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	6 cut(s)	41, 312, 495, 833, 851, 942
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	6 cut(s)	41, 312, 495, 833, 851, 942
Eco130I	CCWWGG	1 cut(s)	896
Eco57I	CTGAAG	2 cut(s)	455, 623
Eco91I	GGTNACC	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	896
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	896
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	4 cut(s)	229, 290, 371, 448
FatI	CATG	4 cut(s)	225, 286, 367, 444
FauI	CCCGC	2 cut(s)	55, 789
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	5 cut(s)	339, 482, 608, 701, 744
Fsp4HI	GCNGC	5 cut(s)	339, 482, 608, 701, 744
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	128, 882
GluI	GCNGC	5 cut(s)	339, 482, 608, 701, 744
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	129, 883
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	4 cut(s)	229, 290, 371, 448
Hin6I	GCGC	2 cut(s)	127, 881
HinP1I	GCGC	2 cut(s)	127, 881
HphI	GGTGA	2 cut(s)	302, 680
Hpy166II	GTNNAC	1 cut(s)	560
Hpy188I	TCNGA	4 cut(s)	70, 171, 177, 474
Hpy188III	TCNNGA	6 cut(s)	311, 587, 639, 830, 946, 959
Hpy8I	GTNNAC	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	525, 593
HpyCH4III	ACNGT	1 cut(s)	846
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	6 cut(s)	250, 286, 481, 547, 649, 700
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 392, 607, 749
HpyF3I	CTNAG	5 cut(s)	396, 423, 429, 819, 863
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	229, 290, 371, 448
HspAI	GCGC	2 cut(s)	127, 881
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
LguI	GCTCTTC	1 cut(s)	495
LpnPI	CCDG	8 cut(s)	319, 470, 508, 540, 659, 843, 897, 931
Lsp1109I	GCAGC	4 cut(s)	325, 493, 594, 712
LweI	GCATC	3 cut(s)	382, 534, 658
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	6 cut(s)	192, 239, 294, 628, 779, 828
MboI	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
MfeI	CAATTG	1 cut(s)	653
MflI	RGATCY	3 cut(s)	237, 626, 826
MluCI	AATT	8 cut(s)	15, 119, 355, 653, 734, 761, 912, 964
MlyI	GAGTC	3 cut(s)	77, 386, 672
Mph1103I	ATGCAT	1 cut(s)	549
MroXI	GAANNNNTTC	3 cut(s)	150, 165, 356
MseI	TTAA	3 cut(s)	303, 678, 891
MunI	CAATTG	1 cut(s)	653
Mva1269I	GAATGC	3 cut(s)	531, 547, 703
MwoI	GCNNNNNNNGC	4 cut(s)	211, 392, 607, 749
NdeII	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
NlaIII	CATG	4 cut(s)	229, 290, 371, 448
NlaIV	GGNNCC	2 cut(s)	828, 950
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	3 cut(s)	531, 547, 703
PdmI	GAANNNNTTC	3 cut(s)	150, 165, 356
PfeI	GAWTC	7 cut(s)	132, 146, 172, 186, 463, 793, 901
PkrI	GCNGC	5 cut(s)	340, 483, 609, 702, 745
PleI	GAGTC	3 cut(s)	77, 385, 671
PpsI	GAGTC	3 cut(s)	77, 385, 671
PscI	ACATGT	1 cut(s)	225
PspEI	GGTNACC	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	828, 950
PstI	CTGCAG	1 cut(s)	483
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	3 cut(s)	237, 626, 826
RsaI	GTAC	2 cut(s)	324, 848
RsaNI	GTAC	2 cut(s)	323, 847
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	303, 678, 891
SatI	GCNGC	5 cut(s)	339, 482, 608, 701, 744
Sau3AI	GATC	6 cut(s)	190, 237, 292, 626, 777, 826
SchI	GAGTC	3 cut(s)	77, 386, 672
SetI	ASST	5 cut(s)	324, 585, 609, 624, 820
SfaNI	GCATC	3 cut(s)	382, 534, 658
SfcI	CTRYAG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	8 cut(s)	15, 119, 355, 653, 734, 761, 912, 964
SsiI	CCGC	5 cut(s)	48, 158, 214, 743, 782
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	896
TaaI	ACNGT	1 cut(s)	846
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	189, 198, 360
TasI	AATT	8 cut(s)	15, 119, 355, 653, 734, 761, 912, 964
TatI	WGTACW	1 cut(s)	846
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	7 cut(s)	132, 146, 172, 186, 463, 793, 901
Tru1I	TTAA	3 cut(s)	303, 678, 891
Tru9I	TTAA	3 cut(s)	303, 678, 891
TscAI	CASTG	2 cut(s)	567, 827
TseI	GCWGC	4 cut(s)	338, 481, 607, 700
TspDTI	ATGAA	6 cut(s)	8, 195, 356, 452, 482, 747
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	2 cut(s)	567, 827
XapI	RAATTY	1 cut(s)	734
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	3 cut(s)	150, 165, 356
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.