Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Reverse (-)

6903935 .. 6906649

Gene Structure 2715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031632

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAGAGTAGCAGCAATTAATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCTCTCTCCGAAACCACCACCGGCTCCTCCTCCTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCTCAAAATCACTCATTTAGAATCGGTTCTTGCGGAAAGCGTTCGGAATCTGAATGAAAGAATCGATCAAATCGAACAGCGTCAGAAGCGGATTGACGACATGTCGCACAAGATCCACCATTTGCAATCTGTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCATCTCTGGGCTGCTTCGAGGAAGAACAATTTCGACATTCATGTTTTGGAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTACCTCTAAGGCTGAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAAGCTCTTCATATTCAACAATCGAGGACTTTGAGGGTTCAAAGGCAAGTAAGCTATACAAGATGCACGTTCTTGAAGTTCTTCAACAACCTTCTTGACGACCATTTGCTGAAGCTGCTTGGGTCTAAAATAAGATCCTTTTTCTCACGAACCCTGCATCAATTGGAAAGAGTCTTTATAGCATTTAAGAGGTCTCACCATAAGTTGCAGCATTCCATCAAAGAGGCATTGGAGAAGAATGAATCTACTGCAGCTCTTGCTAATGAGGAATTGGTTTTCTATGTGGCTACCGCCCTCATCATCTTGCCAATAATGATGGCCTGGATGTTTCTCTCCTCAAAATTCCAAGCTAGTTGCTCTCTTGACGTGACCTATATGCACTCGCAGACCTTTACAAGTCCTGAGGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

34.6

Weight (kDa)

8.49

Isoelectric Point (pI)

59.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	48, 158, 214, 774
AclWI	GGATC	2 cut(s)	232, 612
AcsI	RAATTY	1 cut(s)	824
AcuI	CTGAAG	2 cut(s)	455, 614
AfaI	GTAC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	7 cut(s)	124, 410, 467, 500, 524, 559, 568
AhdI	GACNNNNNGTC	1 cut(s)	226
AjiI	CACGTC	1 cut(s)	850
AjnI	CCWGG	1 cut(s)	803
AluBI	AGCT	6 cut(s)	127, 488, 537, 598, 737, 833
AluI	AGCT	6 cut(s)	127, 488, 537, 598, 737, 833
Alw26I	GTCTC	2 cut(s)	469, 681
AlwI	GGATC	2 cut(s)	232, 612
AlwNI	CAGNNNCTG	1 cut(s)	478
AoxI	GGCC	1 cut(s)	801
ApeKI	GCWGC	6 cut(s)	11, 338, 481, 598, 691, 734
ApoI	RAATTY	1 cut(s)	824
AseI	ATTAAT	1 cut(s)	18
Asp700I	GAANNNNTTC	4 cut(s)	150, 165, 356, 563
AsuHPI	GGTGA	2 cut(s)	302, 671
AxyI	CCTNAGG	1 cut(s)	885
BarI	GAAGNNNNNNTAC	2 cut(s)	306, 338
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	6 cut(s)	23, 325, 493, 585, 703, 746
BccI	CCATC	3 cut(s)	67, 707, 793
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	805
BciVI	GTATCC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	469, 681
BfaI	CTAG	2 cut(s)	311, 834
BfmI	CTRYAG	2 cut(s)	479, 732
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	6 cut(s)	12, 339, 482, 599, 692, 735
BlsI	GCNGC	6 cut(s)	13, 340, 483, 600, 693, 736
Bme1390I	CCNGG	1 cut(s)	805
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgBI	CACGTC	1 cut(s)	850
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	805
BmsI	GCATC	4 cut(s)	337, 382, 536, 649
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse118I	RCCGGY	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	2 cut(s)	281, 464
BseBI	CCWGG	1 cut(s)	805
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	1 cut(s)	813
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	2 cut(s)	281, 464
BseMII	CTCAG	3 cut(s)	387, 420, 876
BseRI	GAGGAG	6 cut(s)	76, 79, 82, 85, 413, 808
BseXI	GCAGC	6 cut(s)	23, 325, 493, 585, 703, 746
BshFI	GGCC	1 cut(s)	803
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	81
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	469, 681
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	1 cut(s)	803
Bso31I	GGTCTC	1 cut(s)	681
Bsp143I	GATC	4 cut(s)	190, 237, 292, 617
BspACI	CCGC	4 cut(s)	48, 158, 214, 774
BspANI	GGCC	1 cut(s)	803
BspCNI	CTCAG	3 cut(s)	388, 421, 877
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	85
BspMAI	CTGCAG	2 cut(s)	483, 736
BspPI	GGATC	2 cut(s)	232, 612
BspQI	GCTCTTC	1 cut(s)	495
BspTNI	GGTCTC	1 cut(s)	681
BsrDI	GCAATG	2 cut(s)	281, 464
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssMI	GATC	4 cut(s)	190, 237, 292, 617
Bst2UI	CCWGG	1 cut(s)	805
Bst6I	CTCTTC	3 cut(s)	41, 312, 495
BstAPI	GCANNNNNTGC	2 cut(s)	392, 740
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	4 cut(s)	396, 423, 429, 885
BstEII	GGTNACC	2 cut(s)	415, 448
BstF5I	GGATG	1 cut(s)	813
BstKTI	GATC	4 cut(s)	193, 240, 295, 620
BstMAI	GTCTC	2 cut(s)	469, 681
BstMBI	GATC	4 cut(s)	190, 237, 292, 617
BstMWI	GCNNNNNNNGC	4 cut(s)	211, 392, 598, 740
BstNI	CCWGG	1 cut(s)	805
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	2 cut(s)	415, 448
BstSCI	CCNGG	1 cut(s)	803
BstSFI	CTRYAG	2 cut(s)	479, 732
BstV1I	GCAGC	6 cut(s)	23, 325, 493, 585, 703, 746
BstX2I	RGATCY	2 cut(s)	237, 617
BstYI	RGATCY	2 cut(s)	237, 617
Bsu15I	ATCGAT	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	803
BsuTUI	ATCGAT	1 cut(s)	189
BtrI	CACGTC	1 cut(s)	850
BtsCI	GGATG	1 cut(s)	813
Cac8I	GCNNGC	1 cut(s)	486
CaiI	CAGNNNCTG	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	80
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	226, 287, 368, 445
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	4 cut(s)	396, 423, 429, 885
DpnI	GATC	4 cut(s)	192, 239, 294, 619
DpnII	GATC	4 cut(s)	190, 237, 292, 617
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	3 cut(s)	41, 312, 495
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	3 cut(s)	41, 312, 495
Eco31I	GGTCTC	1 cut(s)	681
Eco57I	CTGAAG	2 cut(s)	455, 614
Eco81I	CCTNAGG	1 cut(s)	885
Eco91I	GGTNACC	2 cut(s)	415, 448
EcoO65I	GGTNACC	2 cut(s)	415, 448
EcoRII	CCWGG	1 cut(s)	803
FaeI	CATG	4 cut(s)	229, 290, 371, 448
FatI	CATG	4 cut(s)	225, 286, 367, 444
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	6 cut(s)	12, 339, 482, 599, 692, 735
FokI	GGATG	1 cut(s)	820
Fsp4HI	GCNGC	6 cut(s)	12, 339, 482, 599, 692, 735
FspBI	CTAG	2 cut(s)	311, 834
GluI	GCNGC	6 cut(s)	12, 339, 482, 599, 692, 735
HaeIII	GGCC	1 cut(s)	803
HapII	CCGG	1 cut(s)	81
HgaI	GACGC	1 cut(s)	194
Hin1II	CATG	4 cut(s)	229, 290, 371, 448
HinfI	GANTC	7 cut(s)	146, 172, 186, 377, 463, 654, 725
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	302, 671
Hpy188I	TCNGA	5 cut(s)	70, 171, 177, 210, 474
Hpy188III	TCNNGA	6 cut(s)	311, 556, 578, 630, 845, 884
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	584
HpyCH4IV	ACGT	2 cut(s)	551, 849
HpyCH4V	TGCA	8 cut(s)	250, 286, 481, 549, 640, 691, 734, 862
HpyF10VI	GCNNNNNNNGC	4 cut(s)	211, 392, 598, 740
HpyF3I	CTNAG	4 cut(s)	396, 423, 429, 885
HpySE526I	ACGT	2 cut(s)	551, 849
Hsp92II	CATG	4 cut(s)	229, 290, 371, 448
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	190, 237, 292, 617
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	94, 319, 650, 790, 817
Lsp1109I	GCAGC	6 cut(s)	23, 325, 493, 585, 703, 746
LweI	GCATC	4 cut(s)	337, 382, 536, 649
MaeI	CTAG	2 cut(s)	311, 834
MaeII	ACGT	2 cut(s)	551, 849
MaeIII	GTNAC	3 cut(s)	415, 448, 850
MalI	GATC	4 cut(s)	192, 239, 294, 619
MboI	GATC	4 cut(s)	190, 237, 292, 617
MboII	GAAGA	8 cut(s)	28, 326, 329, 361, 445, 482, 556, 730
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	2 cut(s)	237, 617
MluCI	AATT	6 cut(s)	15, 119, 355, 644, 752, 824
MlyI	GAGTC	2 cut(s)	386, 663
MroXI	GAANNNNTTC	4 cut(s)	150, 165, 356, 563
MseI	TTAA	3 cut(s)	18, 303, 669
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	805
MunI	CAATTG	1 cut(s)	644
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	1 cut(s)	805
MwoI	GCNNNNNNNGC	4 cut(s)	211, 392, 598, 740
NdeII	GATC	4 cut(s)	190, 237, 292, 617
NlaIII	CATG	4 cut(s)	229, 290, 371, 448
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	850
NspI	RCATGY	1 cut(s)	229
PciI	ACATGT	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	495
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	1 cut(s)	694
PdmI	GAANNNNTTC	4 cut(s)	150, 165, 356, 563
PfeI	GAWTC	5 cut(s)	146, 172, 186, 463, 725
PkrI	GCNGC	6 cut(s)	13, 340, 483, 600, 693, 736
PleI	GAGTC	2 cut(s)	385, 662
PpsI	GAGTC	2 cut(s)	385, 662
PscI	ACATGT	1 cut(s)	225
PshBI	ATTAAT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	803
PspEI	GGTNACC	2 cut(s)	415, 448
PspGI	CCWGG	1 cut(s)	803
PspN4I	GGNNCC	1 cut(s)	85
PstI	CTGCAG	2 cut(s)	483, 736
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	237, 617
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	18, 303, 669
SatI	GCNGC	6 cut(s)	12, 339, 482, 599, 692, 735
Sau3AI	GATC	4 cut(s)	190, 237, 292, 617
SchI	GAGTC	2 cut(s)	386, 663
ScrFI	CCNGG	1 cut(s)	805
SfaNI	GCATC	4 cut(s)	337, 382, 536, 649
SfcI	CTRYAG	2 cut(s)	479, 732
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	15, 119, 355, 644, 752, 824
SsiI	CCGC	4 cut(s)	48, 158, 214, 774
SspMI	CTAG	2 cut(s)	311, 834
StyD4I	CCNGG	1 cut(s)	803
TaiI	ACGT	2 cut(s)	554, 852
TaqI	TCGA	5 cut(s)	189, 198, 344, 360, 506
TasI	AATT	6 cut(s)	15, 119, 355, 644, 752, 824
TfiI	GAWTC	5 cut(s)	146, 172, 186, 463, 725
Tru1I	TTAA	3 cut(s)	18, 303, 669
Tru9I	TTAA	3 cut(s)	18, 303, 669
TseFI	GTSAC	1 cut(s)	850
TseI	GCWGC	6 cut(s)	11, 338, 481, 598, 691, 734
Tsp45I	GTSAC	1 cut(s)	850
TspDTI	ATGAA	5 cut(s)	195, 356, 452, 482, 738
TspGWI	ACGGA	1 cut(s)	88
VspI	ATTAAT	1 cut(s)	18
XapI	RAATTY	1 cut(s)	824
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	229
XmnI	GAANNNNTTC	4 cut(s)	150, 165, 356, 563
XspI	CTAG	2 cut(s)	311, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.