Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Reverse (-)

5992634 .. 5995705

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG079500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGAGTAGCAGCAATTCATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCCCTCTCCGAAACCACCACCGACTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCTCAAAATCGCTCATTTAGAATCGGTTCTTGCGGAAAGCGTTCGGAATCTGAATGAGAGAATCGATCAAATCGAACAGCGCGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCATTTGCAATCTCTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCGTCTCTGGGCCGCTTCGAGGAAGAACAATTTCGATATTCATGTTTTGGAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTACCTCTAAGGCTAAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAGGCTCTTCATATTCAACAATCGAGGACTTTGAGGGTTCAAAGGCAAGTAAGTTATACAAGATGCACATTCTTGAAGTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGCTGCTTGGGTCTAACGTGAGATCCTTTTTATCACGAACCCTGCATCAATTGGAAAGAGTCTTTATAGCATTTAAGAGGTCTCACCATAAGGTTAGTGCCAAAATTGTTGTCTTCATTAGTATTTCTTCAGAGTTCTTACTTTTTAGCATGACCCTGATGACATTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

29.54

Weight (kDa)

9.67

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccII	CGCG	1 cut(s)	198
AciI	CCGC	4 cut(s)	48, 149, 205, 330
AclWI	GGATC	2 cut(s)	223, 603
AcuI	CTGAAG	3 cut(s)	446, 605, 699
AcyI	GRCGYC	1 cut(s)	319
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	2 cut(s)	336, 450
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	7 cut(s)	115, 401, 458, 491, 515, 550, 559
AhdI	GACNNNNNGTC	1 cut(s)	217
AluBI	AGCT	2 cut(s)	118, 589
AluI	AGCT	2 cut(s)	118, 589
Alw26I	GTCTC	3 cut(s)	326, 460, 672
AlwI	GGATC	2 cut(s)	223, 603
AlwNI	CAGNNNCTG	1 cut(s)	469
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	3 cut(s)	11, 472, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	681, 713
Asp700I	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	293, 662
BarI	GAAGNNNNNNTAC	2 cut(s)	297, 329
BbsI	GAAGAC	1 cut(s)	691
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	23, 484, 576
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	332
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	3 cut(s)	326, 460, 672
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	12, 330, 473, 590
BlsI	GCNGC	4 cut(s)	13, 331, 474, 591
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	327
BmsI	GCATC	3 cut(s)	373, 527, 640
BpiI	GAAGAC	1 cut(s)	691
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	245
Bsa29I	ATCGAT	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	2 cut(s)	336, 450
Bse3DI	GCAATG	2 cut(s)	272, 455
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	336, 450
BseMI	GCAATG	2 cut(s)	272, 455
BseMII	CTCAG	1 cut(s)	378
BseRI	GAGGAG	2 cut(s)	76, 404
BseXI	GCAGC	3 cut(s)	23, 484, 576
Bsh1236I	CGCG	1 cut(s)	198
BshFI	GGCC	1 cut(s)	329
BshVI	ATCGAT	1 cut(s)	180
BslI	CCNNNNNNNGG	2 cut(s)	336, 450
BsmAI	GTCTC	3 cut(s)	326, 460, 672
BsmBI	CGTCTC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	181, 228, 283, 608
BspACI	CCGC	4 cut(s)	48, 149, 205, 330
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	379
BspDI	ATCGAT	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	474
BspPI	GGATC	2 cut(s)	223, 603
BspQI	GCTCTTC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	672
BsrDI	GCAATG	2 cut(s)	272, 455
BssMI	GATC	4 cut(s)	181, 228, 283, 608
BssNI	GRCGYC	1 cut(s)	319
Bst6I	CTCTTC	3 cut(s)	41, 303, 486
BstACI	GRCGYC	1 cut(s)	319
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	387, 414, 420
BstEII	GGTNACC	2 cut(s)	406, 439
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	4 cut(s)	184, 231, 286, 611
BstMAI	GTCTC	3 cut(s)	326, 460, 672
BstMBI	GATC	4 cut(s)	181, 228, 283, 608
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 383, 589
BstNSI	RCATGY	1 cut(s)	220
BstPI	GGTNACC	2 cut(s)	406, 439
BstSFI	CTRYAG	1 cut(s)	470
BstUI	CGCG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	23, 484, 576
BstV2I	GAAGAC	1 cut(s)	691
BstX2I	RGATCY	2 cut(s)	228, 608
BstYI	RGATCY	2 cut(s)	228, 608
Bsu15I	ATCGAT	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	477
CaiI	CAGNNNCTG	1 cut(s)	469
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	327
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	5 cut(s)	217, 278, 359, 436, 736
CviJI	RGCY	6 cut(s)	118, 329, 397, 419, 479, 589
CviKI_1	RGCY	6 cut(s)	118, 329, 397, 419, 479, 589
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	387, 414, 420
DpnI	GATC	4 cut(s)	183, 230, 285, 610
DpnII	GATC	4 cut(s)	181, 228, 283, 608
DrdI	GACNNNNNNGTC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	3 cut(s)	41, 303, 486
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	3 cut(s)	41, 303, 486
Eco31I	GGTCTC	1 cut(s)	672
Eco57I	CTGAAG	3 cut(s)	446, 605, 699
Eco91I	GGTNACC	2 cut(s)	406, 439
EcoO65I	GGTNACC	2 cut(s)	406, 439
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	5 cut(s)	220, 281, 362, 439, 739
FaiI	YATR	9 cut(s)	218, 279, 360, 437, 486, 531, 653, 675, 737
FatI	CATG	5 cut(s)	216, 277, 358, 435, 735
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	4 cut(s)	12, 330, 473, 590
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	12, 330, 473, 590
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	4 cut(s)	12, 330, 473, 590
HaeIII	GGCC	1 cut(s)	329
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	319
Hin1II	CATG	5 cut(s)	220, 281, 362, 439, 739
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	7 cut(s)	83, 137, 163, 177, 368, 454, 645
HphI	GGTGA	2 cut(s)	293, 662
Hpy188I	TCNGA	5 cut(s)	70, 162, 168, 465, 718
Hpy188III	TCNNGA	4 cut(s)	302, 547, 569, 621
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	575
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	5 cut(s)	241, 277, 472, 540, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 383, 589
HpyF3I	CTNAG	3 cut(s)	387, 414, 420
HpySE526I	ACGT	1 cut(s)	603
Hsp92I	GRCGYC	1 cut(s)	319
Hsp92II	CATG	5 cut(s)	220, 281, 362, 439, 739
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	181, 228, 283, 608
LguI	GCTCTTC	1 cut(s)	486
LpnPI	CCDG	4 cut(s)	310, 461, 641, 755
Lsp1109I	GCAGC	3 cut(s)	23, 484, 576
LweI	GCATC	3 cut(s)	373, 527, 640
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	406, 439
MalI	GATC	4 cut(s)	183, 230, 285, 610
MboI	GATC	4 cut(s)	181, 228, 283, 608
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	2 cut(s)	228, 608
MluCI	AATT	5 cut(s)	15, 110, 346, 635, 690
MlyI	GAGTC	3 cut(s)	77, 377, 654
MroXI	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
MseI	TTAA	2 cut(s)	294, 660
MslI	CAYNNNNRTG	1 cut(s)	754
MunI	CAATTG	1 cut(s)	635
MvnI	CGCG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	202, 383, 589
NdeII	GATC	4 cut(s)	181, 228, 283, 608
NlaIII	CATG	5 cut(s)	220, 281, 362, 439, 739
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 195
PdmI	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
PfeI	GAWTC	4 cut(s)	137, 163, 177, 454
PkrI	GCNGC	4 cut(s)	13, 331, 474, 591
PleI	GAGTC	3 cut(s)	77, 376, 653
PpsI	GAGTC	3 cut(s)	77, 376, 653
PscI	ACATGT	1 cut(s)	216
PspEI	GGTNACC	2 cut(s)	406, 439
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	474
PstNI	CAGNNNCTG	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	228, 608
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	754
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	2 cut(s)	294, 660
SatI	GCNGC	4 cut(s)	12, 330, 473, 590
Sau3AI	GATC	4 cut(s)	181, 228, 283, 608
Sau96I	GGNCC	1 cut(s)	327
SchI	GAGTC	3 cut(s)	77, 377, 654
SetI	ASST	8 cut(s)	120, 315, 413, 567, 591, 606, 668, 681
SfaNI	GCATC	3 cut(s)	373, 527, 640
SfcI	CTRYAG	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	15, 110, 346, 635, 690
SsiI	CCGC	4 cut(s)	48, 149, 205, 330
SspMI	CTAG	1 cut(s)	302
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	5 cut(s)	180, 189, 335, 351, 497
TasI	AATT	5 cut(s)	15, 110, 346, 635, 690
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	4 cut(s)	137, 163, 177, 454
Tru1I	TTAA	2 cut(s)	294, 660
Tru9I	TTAA	2 cut(s)	294, 660
TseI	GCWGC	3 cut(s)	11, 472, 589
TspDTI	ATGAA	5 cut(s)	8, 347, 443, 473, 691
TspGWI	ACGGA	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	301
XceI	RCATGY	1 cut(s)	220
XmnI	GAANNNNTTC	4 cut(s)	141, 156, 347, 554
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.