Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Reverse (-)

6782569 .. 6785708

Gene Structure 3140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G006610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGAGTAGCAGCAATTCATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCCCTCTCCGAAACCACCACCGACTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCTCAAAATCGCTCATTTAGGTAATTTCACACTTCCACTCTTCGTTTCTTTTTTCGAGTTCGTAGGCCATATAGCGTTTGCTATTGATGTCGTTTCTGCAGAATCGGTTCTTGCGGAAAGCGTTCGGAATCTGAATGAGAGAATCGATCAAATCGAACAGCGCGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCATTTGCAATCTCTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCGGCTCTGGGCCGCTTCAAGGAAGAACAATTTCGACATTCATGTTTTGGAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTACCTCTAAGGCTAAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAGGCTCTTCATATTCAACAATCGAGGACTTTGAGGGTTCAAAGGCAAGTGAGTTATACAAGATGCACATTCTTGAAGTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGCTGCTTGGGTCTAACGTGAGATCCTTTTTCTCACGAACCCTGCATCAATTGGAAAAAGTCTTTATAGCATTTAAGAGGTCTCACCATAAGTTGCAGCATTCCATCAAAGAGGCATTGGAGAAGAATGAATTTACTGCAGCTCTTGCTAATGAGGAATTGGTTTTCTATGTGGCTACTGCCCTCATCATCTTGCCGATAATGATGGCCTGGATTTTTCTCTCCTCAAAATTCCAAGCTAGTTGCTCTATTGACGTGACCTATATGCACTCGCAGACCTATACAAGTCCTGAGGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

37.32

Weight (kDa)

7.31

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccII	CGCG	1 cut(s)	279
AciI	CCGC	5 cut(s)	48, 230, 286, 400, 411
AclWI	GGATC	2 cut(s)	304, 684
AcsI	RAATTY	2 cut(s)	797, 896
AcuI	CTGAAG	2 cut(s)	527, 686
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	2 cut(s)	417, 531
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	8 cut(s)	115, 417, 482, 539, 572, 596, 631, 640
AhdI	GACNNNNNGTC	1 cut(s)	298
AjiI	CACGTC	1 cut(s)	922
AjnI	CCWGG	1 cut(s)	875
AluBI	AGCT	4 cut(s)	118, 670, 809, 905
AluI	AGCT	4 cut(s)	118, 670, 809, 905
Alw26I	GTCTC	2 cut(s)	541, 753
AlwI	GGATC	2 cut(s)	304, 684
AlwNI	CAGNNNCTG	1 cut(s)	550
AoxI	GGCC	3 cut(s)	181, 408, 873
ApeKI	GCWGC	5 cut(s)	11, 553, 670, 763, 806
ApoI	RAATTY	2 cut(s)	797, 896
Asp700I	GAANNNNTTC	4 cut(s)	222, 237, 428, 635
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	1 cut(s)	408
AsuHPI	GGTGA	2 cut(s)	374, 743
AxyI	CCTNAGG	1 cut(s)	957
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbvCI	CCTCAGC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	23, 565, 657, 775, 818
BccI	CCATC	3 cut(s)	67, 779, 865
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	1 cut(s)	877
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	2 cut(s)	541, 753
BfaI	CTAG	2 cut(s)	383, 906
BfmI	CTRYAG	3 cut(s)	213, 551, 804
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	7 cut(s)	12, 401, 411, 554, 671, 764, 807
BlsI	GCNGC	7 cut(s)	13, 402, 412, 555, 672, 765, 808
Bme1390I	CCNGG	1 cut(s)	877
BmeRI	GACNNNNNGTC	1 cut(s)	298
BmgBI	CACGTC	1 cut(s)	922
BmgT120I	GGNCC	1 cut(s)	408
BmrFI	CCNGG	1 cut(s)	877
BmsI	GCATC	3 cut(s)	454, 608, 721
Bpu10I	CCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 531
Bse21I	CCTNAGG	1 cut(s)	957
Bse3DI	GCAATG	2 cut(s)	353, 536
BseBI	CCWGG	1 cut(s)	877
BseCI	ATCGAT	1 cut(s)	261
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	417, 531
BseMI	GCAATG	2 cut(s)	353, 536
BseMII	CTCAG	2 cut(s)	459, 948
BseRI	GAGGAG	3 cut(s)	76, 485, 880
BseXI	GCAGC	5 cut(s)	23, 565, 657, 775, 818
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	183, 410, 875
BshVI	ATCGAT	1 cut(s)	261
BslI	CCNNNNNNNGG	2 cut(s)	417, 531
BsmAI	GTCTC	2 cut(s)	541, 753
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	3 cut(s)	183, 410, 875
Bso31I	GGTCTC	1 cut(s)	753
Bsp143I	GATC	4 cut(s)	262, 309, 364, 689
BspACI	CCGC	5 cut(s)	48, 230, 286, 400, 411
BspANI	GGCC	3 cut(s)	183, 410, 875
BspCNI	CTCAG	2 cut(s)	460, 949
BspDI	ATCGAT	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	279
BspMAI	CTGCAG	3 cut(s)	217, 555, 808
BspPI	GGATC	2 cut(s)	304, 684
BspQI	GCTCTTC	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	753
BsrDI	GCAATG	2 cut(s)	353, 536
BssMI	GATC	4 cut(s)	262, 309, 364, 689
Bst2UI	CCWGG	1 cut(s)	877
Bst6I	CTCTTC	4 cut(s)	41, 161, 384, 567
BstAPI	GCANNNNNTGC	2 cut(s)	464, 812
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	4 cut(s)	468, 495, 501, 957
BstEII	GGTNACC	2 cut(s)	487, 520
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	265, 312, 367, 692
BstMAI	GTCTC	2 cut(s)	541, 753
BstMBI	GATC	4 cut(s)	262, 309, 364, 689
BstMWI	GCNNNNNNNGC	4 cut(s)	283, 464, 670, 812
BstNI	CCWGG	1 cut(s)	877
BstNSI	RCATGY	1 cut(s)	301
BstPI	GGTNACC	2 cut(s)	487, 520
BstSCI	CCNGG	1 cut(s)	875
BstSFI	CTRYAG	3 cut(s)	213, 551, 804
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	5 cut(s)	23, 565, 657, 775, 818
BstX2I	RGATCY	2 cut(s)	309, 689
BstYI	RGATCY	2 cut(s)	309, 689
Bsu15I	ATCGAT	1 cut(s)	261
Bsu36I	CCTNAGG	1 cut(s)	957
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	183, 410, 875
BsuTUI	ATCGAT	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	922
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	558
CaiI	CAGNNNCTG	1 cut(s)	550
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	408
ClaI	ATCGAT	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	4 cut(s)	298, 359, 440, 517
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	4 cut(s)	468, 495, 501, 957
DpnI	GATC	4 cut(s)	264, 311, 366, 691
DpnII	GATC	4 cut(s)	262, 309, 364, 689
DrdI	GACNNNNNNGTC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	4 cut(s)	41, 161, 384, 567
Eam1105I	GACNNNNNGTC	1 cut(s)	298
EarI	CTCTTC	4 cut(s)	41, 161, 384, 567
Eco31I	GGTCTC	1 cut(s)	753
Eco57I	CTGAAG	2 cut(s)	527, 686
Eco81I	CCTNAGG	1 cut(s)	957
Eco91I	GGTNACC	2 cut(s)	487, 520
EcoO65I	GGTNACC	2 cut(s)	487, 520
EcoRII	CCWGG	1 cut(s)	875
FaeI	CATG	4 cut(s)	301, 362, 443, 520
FatI	CATG	4 cut(s)	297, 358, 439, 516
FauI	CCCGC	1 cut(s)	55
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	7 cut(s)	12, 401, 411, 554, 671, 764, 807
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	7 cut(s)	12, 401, 411, 554, 671, 764, 807
FspBI	CTAG	2 cut(s)	383, 906
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	7 cut(s)	12, 401, 411, 554, 671, 764, 807
HaeIII	GGCC	3 cut(s)	183, 410, 875
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	301, 362, 443, 520
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	6 cut(s)	83, 218, 244, 258, 449, 535
HphI	GGTGA	2 cut(s)	374, 743
Hpy188I	TCNGA	4 cut(s)	70, 243, 249, 546
Hpy188III	TCNNGA	5 cut(s)	383, 628, 650, 702, 956
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	656
HpyCH4IV	ACGT	2 cut(s)	684, 921
HpyCH4V	TGCA	9 cut(s)	215, 322, 358, 553, 621, 712, 763, 806, 934
HpyF10VI	GCNNNNNNNGC	4 cut(s)	283, 464, 670, 812
HpyF3I	CTNAG	4 cut(s)	468, 495, 501, 957
HpySE526I	ACGT	2 cut(s)	684, 921
Hsp92II	CATG	4 cut(s)	301, 362, 443, 520
HspAI	GCGC	1 cut(s)	277
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	262, 309, 364, 689
LguI	GCTCTTC	1 cut(s)	567
LpnPI	CCDG	5 cut(s)	391, 542, 722, 862, 889
Lsp1109I	GCAGC	5 cut(s)	23, 565, 657, 775, 818
LweI	GCATC	3 cut(s)	454, 608, 721
MaeI	CTAG	2 cut(s)	383, 906
MaeII	ACGT	2 cut(s)	684, 921
MaeIII	GTNAC	3 cut(s)	487, 520, 922
MalI	GATC	4 cut(s)	264, 311, 366, 691
MboI	GATC	4 cut(s)	262, 309, 364, 689
MfeI	CAATTG	1 cut(s)	716
MflI	RGATCY	2 cut(s)	309, 689
MluCI	AATT	8 cut(s)	15, 110, 139, 427, 716, 797, 824, 896
MlyI	GAGTC	2 cut(s)	77, 458
MroXI	GAANNNNTTC	4 cut(s)	222, 237, 428, 635
MseI	TTAA	2 cut(s)	375, 741
MspR9I	CCNGG	1 cut(s)	877
MunI	CAATTG	1 cut(s)	716
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	877
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	283, 464, 670, 812
NdeII	GATC	4 cut(s)	262, 309, 364, 689
NlaIII	CATG	4 cut(s)	301, 362, 443, 520
NmuCI	GTSAC	1 cut(s)	922
NspI	RCATGY	1 cut(s)	301
PciI	ACATGT	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 276
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	4 cut(s)	222, 237, 428, 635
PfeI	GAWTC	4 cut(s)	218, 244, 258, 535
PkrI	GCNGC	7 cut(s)	13, 402, 412, 555, 672, 765, 808
PleI	GAGTC	2 cut(s)	77, 457
PpsI	GAGTC	2 cut(s)	77, 457
PscI	ACATGT	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	875
PspEI	GGTNACC	2 cut(s)	487, 520
PspGI	CCWGG	1 cut(s)	875
PspPI	GGNCC	1 cut(s)	408
PstI	CTGCAG	3 cut(s)	217, 555, 808
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	309, 689
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	567
SaqAI	TTAA	2 cut(s)	375, 741
SatI	GCNGC	7 cut(s)	12, 401, 411, 554, 671, 764, 807
Sau3AI	GATC	4 cut(s)	262, 309, 364, 689
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	2 cut(s)	77, 458
ScrFI	CCNGG	1 cut(s)	877
SfaNI	GCATC	3 cut(s)	454, 608, 721
SfcI	CTRYAG	3 cut(s)	213, 551, 804
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	8 cut(s)	15, 110, 139, 427, 716, 797, 824, 896
SsiI	CCGC	5 cut(s)	48, 230, 286, 400, 411
SspMI	CTAG	2 cut(s)	383, 906
StyD4I	CCNGG	1 cut(s)	875
TaiI	ACGT	2 cut(s)	687, 924
TaqI	TCGA	5 cut(s)	171, 261, 270, 432, 578
TasI	AATT	8 cut(s)	15, 110, 139, 427, 716, 797, 824, 896
TauI	GCSGC	2 cut(s)	403, 413
TfiI	GAWTC	4 cut(s)	218, 244, 258, 535
Tru1I	TTAA	2 cut(s)	375, 741
Tru9I	TTAA	2 cut(s)	375, 741
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	5 cut(s)	11, 553, 670, 763, 806
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	5 cut(s)	8, 428, 524, 554, 810
TspGWI	ACGGA	1 cut(s)	79
XapI	RAATTY	2 cut(s)	797, 896
XbaI	TCTAGA	1 cut(s)	382
XceI	RCATGY	1 cut(s)	301
XmnI	GAANNNNTTC	4 cut(s)	222, 237, 428, 635
XspI	CTAG	2 cut(s)	383, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.