Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Forward (+)

26083044 .. 26085269

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g24200.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGACAAATTCAGTTTATCTGATTCCGTTGCTATTTCTATTTCCCGCCTTCTTCTCGTCGTCTCTCTTCGTTCTCTCCGAAACGACATGCTCGCTTCCCCACACCGCCGACGACGGCGGCCGCGACGGCAGCTCCCTCAGCCAGTTCCACCAATTCAACCTCAAGATCGCCCGCTTAGAGTCCATCTTAGCAGAAAGCATTCAGAATCTGAGCGAGAAGATAGTTCGTATCGAAGAGCGCGAGAAGCGCATTGACGAAATGTCGCAGAAGATCCATCACTTGCAATCTGTTTTATCCGCTCTTAAGGGCGATTCGATCCGTGCCGATGGAAGGATCAATGCTCTGGAAGAAGAGGTACGGATTCTATGGGAGGCGTCGAGAAAGTTAAACTTTGATCTTCATGTTTTGGAGTCTAAGGCACAGGATGCTGAGGATCGGCTCAAAACAGTTGCCTCTCAGGCTCGAAAGATGACCGACATTGTTACCGAACAATGGATTCAAATTCAGCGACTCGAGCAGGCTCTTTATATTACGCAGGTGAGGACTAAGAGGCTTCAAAGGGAAGTGAGCTCTGGAAAGTGCACATTCTTGAAGTTCATGAACAGGCTTTATGATGACCATCTGCTGAAGATGGTTGGGCCCAACTTGAGATCCTATTTCTCTCAAGCTCAGCATCAGTTGAAGAGAGTCTTTGAAGCAGTTAAAAGGTCTCACCACGAGTTGCAACATTTCATCAAAGACAAACTGGAACAGAATGAATTTACCGCAGCCCTCGCCCACGAGGAATTAGTTTTCTTTATGGCTTCTGCCGTAATTACTTTCCCGATTATGAGTGCTTGGATGCTGCTCTCATCAAAATTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.37

Weight (kDa)

7.86

Isoelectric Point (pI)

49.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	299
AccII	CGCG	2 cut(s)	123, 240
AciI	CCGC	7 cut(s)	45, 105, 117, 121, 172, 297, 765
AclWI	GGATC	5 cut(s)	265, 310, 341, 441, 645
AcoI	YGGCCR	1 cut(s)	118
AcsI	RAATTY	4 cut(s)	7, 501, 758, 857
AcuI	CTGAAG	1 cut(s)	647
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	2 cut(s)	330, 492
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	6 cut(s)	157, 500, 557, 592, 682, 695
AhdI	GACNNNNNGTC	1 cut(s)	259
AluBI	AGCT	3 cut(s)	132, 570, 668
AluI	AGCT	3 cut(s)	132, 570, 668
Alw21I	GWGCWC	2 cut(s)	572, 584
Alw26I	GTCTC	2 cut(s)	66, 714
Alw44I	GTGCAC	1 cut(s)	580
AlwI	GGATC	5 cut(s)	265, 310, 341, 441, 645
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	118, 638
ApaI	GGGCCC	1 cut(s)	642
ApaLI	GTGCAC	1 cut(s)	580
ApeKI	GCWGC	3 cut(s)	129, 767, 844
ApoI	RAATTY	4 cut(s)	7, 501, 758, 857
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	240, 249
AspS9I	GGNCC	2 cut(s)	638, 639
AsuHPI	GGTGA	2 cut(s)	550, 704
AvaI	CYCGRG	1 cut(s)	512
BaeGI	GKGCMC	2 cut(s)	584, 642
BanII	GRGCYC	2 cut(s)	572, 642
BarI	GAAGNNNNNNTAC	2 cut(s)	339, 371
BauI	CACGAG	2 cut(s)	716, 779
Bbv12I	GWGCWC	2 cut(s)	572, 584
BbvCI	CCTCAGC	2 cut(s)	137, 429
BbvI	GCAGC	3 cut(s)	141, 779, 831
BccI	CCATC	5 cut(s)	191, 282, 320, 625, 627
BceAI	ACGGC	3 cut(s)	130, 142, 794
BcoDI	GTCTC	2 cut(s)	66, 714
BfrI	CTTAAG	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	526
BglI	GCCNNNNNGGC	2 cut(s)	126, 458
BisI	GCNGC	5 cut(s)	118, 121, 130, 768, 845
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	5 cut(s)	119, 122, 131, 769, 846
BmeRI	GACNNNNNGTC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	512
BmgT120I	GGNCC	2 cut(s)	638, 639
BmiI	GGNNCC	1 cut(s)	640
BmsI	GCATC	3 cut(s)	415, 682, 831
Bpu10I	CCTNAGC	2 cut(s)	137, 429
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	3 cut(s)	146, 648, 667
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	714
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	2 cut(s)	330, 492
Bse1I	ACTGG	2 cut(s)	142, 750
Bse8I	GATNNNNATC	1 cut(s)	618
BseGI	GGATG	2 cut(s)	430, 846
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	330, 492
BseMII	CTCAG	5 cut(s)	151, 200, 420, 470, 683
BseNI	ACTGG	2 cut(s)	142, 750
BseSI	GKGCMC	2 cut(s)	584, 642
BseX3I	CGGCCG	1 cut(s)	118
BseXI	GCAGC	3 cut(s)	141, 779, 831
Bsh1236I	CGCG	2 cut(s)	123, 240
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	2 cut(s)	120, 640
BsiEI	CGRYCG	1 cut(s)	121
BsiHKAI	GWGCWC	2 cut(s)	572, 584
BsiHKCI	CYCGRG	1 cut(s)	512
BslI	CCNNNNNNNGG	2 cut(s)	330, 492
BsmAI	GTCTC	2 cut(s)	66, 714
BsmBI	CGTCTC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	2 cut(s)	120, 640
Bso31I	GGTCTC	1 cut(s)	714
BsoBI	CYCGRG	1 cut(s)	512
Bsp120I	GGGCCC	1 cut(s)	638
Bsp1286I	GDGCHC	3 cut(s)	572, 584, 642
Bsp143I	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	7 cut(s)	45, 105, 117, 121, 172, 297, 765
BspANI	GGCC	2 cut(s)	120, 640
BspCNI	CTCAG	5 cut(s)	150, 201, 421, 469, 682
BspFNI	CGCG	2 cut(s)	123, 240
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	5 cut(s)	265, 310, 341, 441, 645
BspQI	GCTCTTC	1 cut(s)	228
BspTI	CTTAAG	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	714
BsrBI	CCGCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	142, 750
BssMI	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
BssNI	GRCGYC	1 cut(s)	374
BssSI	CACGAG	2 cut(s)	716, 779
Bst2BI	CACGAG	2 cut(s)	716, 779
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	4 cut(s)	71, 228, 345, 677
BstACI	GRCGYC	1 cut(s)	374
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	92, 172, 519
BstDEI	CTNAG	9 cut(s)	137, 175, 187, 209, 414, 429, 456, 546, 669
BstF5I	GGATG	2 cut(s)	430, 846
BstFNI	CGCG	2 cut(s)	123, 240
BstHHI	GCGC	2 cut(s)	240, 249
BstKTI	GATC	7 cut(s)	168, 273, 318, 336, 397, 436, 653
BstMAI	GTCTC	2 cut(s)	66, 714
BstMBI	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	9 cut(s)	126, 129, 138, 244, 246, 425, 458, 514, 773
BstNSI	RCATGY	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	584, 642
BstUI	CGCG	2 cut(s)	123, 240
BstV1I	GCAGC	3 cut(s)	141, 779, 831
BstX2I	RGATCY	2 cut(s)	270, 650
BstYI	RGATCY	2 cut(s)	270, 650
BstZI	CGGCCG	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	120, 640
BtsCI	GGATG	2 cut(s)	430, 846
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	3 cut(s)	92, 172, 519
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	597
CciNI	GCGGCCGC	1 cut(s)	118
CfoI	GCGC	2 cut(s)	240, 249
Cfr13I	GGNCC	2 cut(s)	638, 639
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	3 cut(s)	87, 401, 598
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	9 cut(s)	137, 175, 187, 209, 414, 429, 456, 546, 669
DpnI	GATC	7 cut(s)	167, 272, 317, 335, 396, 435, 652
DpnII	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
DriI	GACNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
Eam1104I	CTCTTC	4 cut(s)	71, 228, 345, 677
Eam1105I	GACNNNNNGTC	1 cut(s)	259
EarI	CTCTTC	4 cut(s)	71, 228, 345, 677
Ecl136II	GAGCTC	1 cut(s)	570
EclXI	CGGCCG	1 cut(s)	118
Eco24I	GRGCYC	2 cut(s)	572, 642
Eco31I	GGTCTC	1 cut(s)	714
Eco52I	CGGCCG	1 cut(s)	118
Eco53kI	GAGCTC	1 cut(s)	570
Eco57I	CTGAAG	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	570
EcoT38I	GRGCYC	2 cut(s)	572, 642
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	3 cut(s)	90, 404, 601
FaiI	YATR	8 cut(s)	88, 367, 402, 528, 599, 612, 800, 830
FalI	AAGNNNNNCTT	4 cut(s)	374, 406, 674, 706
FatI	CATG	3 cut(s)	86, 400, 597
FauI	CCCGC	2 cut(s)	52, 179
Fnu4HI	GCNGC	5 cut(s)	118, 121, 130, 768, 845
FokI	GGATG	2 cut(s)	437, 853
FriOI	GRGCYC	2 cut(s)	572, 642
Fsp4HI	GCNGC	5 cut(s)	118, 121, 130, 768, 845
GlaI	GCGC	2 cut(s)	239, 248
GluI	GCNGC	5 cut(s)	118, 121, 130, 768, 845
HaeIII	GGCC	2 cut(s)	120, 640
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	2 cut(s)	240, 249
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	90, 404, 601
Hin6I	GCGC	2 cut(s)	238, 247
HinP1I	GCGC	2 cut(s)	238, 247
HinfI	GANTC	9 cut(s)	22, 179, 205, 311, 361, 410, 496, 510, 687
HphI	GGTGA	2 cut(s)	550, 704
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	4 cut(s)	21, 79, 204, 210
Hpy188III	TCNNGA	7 cut(s)	163, 344, 378, 573, 589, 598, 823
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	5 cut(s)	61, 113, 116, 128, 379
HpyAV	CCTTC	2 cut(s)	58, 324
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4V	TGCA	3 cut(s)	283, 582, 724
HpyF10VI	GCNNNNNNNGC	9 cut(s)	126, 129, 138, 244, 246, 425, 458, 514, 773
HpyF3I	CTNAG	9 cut(s)	137, 175, 187, 209, 414, 429, 456, 546, 669
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	90, 404, 601
HspAI	GCGC	2 cut(s)	238, 247
Kzo9I	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	9 cut(s)	155, 329, 407, 443, 503, 521, 558, 589, 731
Lsp1109I	GCAGC	3 cut(s)	141, 779, 831
LweI	GCATC	3 cut(s)	415, 682, 831
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	7 cut(s)	167, 272, 317, 335, 396, 435, 652
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
MflI	RGATCY	2 cut(s)	270, 650
MhlI	GDGCHC	3 cut(s)	572, 584, 642
MluCI	AATT	7 cut(s)	7, 152, 501, 758, 785, 813, 857
MlyI	GAGTC	4 cut(s)	188, 419, 504, 696
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	3 cut(s)	303, 386, 702
MspCI	CTTAAG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	198
MvnI	CGCG	2 cut(s)	123, 240
MwoI	GCNNNNNNNGC	9 cut(s)	126, 129, 138, 244, 246, 425, 458, 514, 773
NdeII	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
NlaIII	CATG	3 cut(s)	90, 404, 601
NlaIV	GGNNCC	1 cut(s)	640
NotI	GCGGCCGC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	90
PaeR7I	CTCGAG	1 cut(s)	512
PagI	TCATGA	1 cut(s)	597
PaqCI	CACCTGC	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 120, 237
PctI	GAATGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	5 cut(s)	22, 205, 311, 361, 496
PkrI	GCNGC	5 cut(s)	119, 122, 131, 769, 846
PleI	GAGTC	4 cut(s)	187, 418, 504, 695
PpsI	GAGTC	4 cut(s)	187, 418, 504, 695
Psp124BI	GAGCTC	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	640
PspOMI	GGGCCC	1 cut(s)	638
PspPI	GGNCC	2 cut(s)	638, 639
PspXI	VCTCGAGB	1 cut(s)	512
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	270, 650
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SacI	GAGCTC	1 cut(s)	572
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	3 cut(s)	303, 386, 702
SatI	GCNGC	5 cut(s)	118, 121, 130, 768, 845
Sau3AI	GATC	7 cut(s)	165, 270, 315, 333, 394, 433, 650
Sau96I	GGNCC	2 cut(s)	638, 639
SchI	GAGTC	4 cut(s)	188, 419, 504, 696
SduI	GDGCHC	3 cut(s)	572, 584, 642
SetI	ASST	7 cut(s)	134, 162, 357, 540, 572, 670, 710
SfaNI	GCATC	3 cut(s)	415, 682, 831
Sfr274I	CTCGAG	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	512
SmlI	CTYRAG	5 cut(s)	161, 302, 512, 646, 663
SmoI	CTYRAG	5 cut(s)	161, 302, 512, 646, 663
Sse9I	AATT	7 cut(s)	7, 152, 501, 758, 785, 813, 857
SsiI	CCGC	7 cut(s)	45, 105, 117, 121, 172, 297, 765
SstI	GAGCTC	1 cut(s)	572
TaaI	ACNGT	1 cut(s)	448
TaqI	TCGA	5 cut(s)	231, 314, 377, 463, 513
TaqII	GACCGA	1 cut(s)	488
TasI	AATT	7 cut(s)	7, 152, 501, 758, 785, 813, 857
TauI	GCSGC	2 cut(s)	120, 123
TfiI	GAWTC	5 cut(s)	22, 205, 311, 361, 496
Tru1I	TTAA	3 cut(s)	303, 386, 702
Tru9I	TTAA	3 cut(s)	303, 386, 702
TseI	GCWGC	3 cut(s)	129, 767, 844
TspDTI	ATGAA	5 cut(s)	389, 586, 614, 721, 771
TspGWI	ACGGA	3 cut(s)	15, 308, 373
Vha464I	CTTAAG	1 cut(s)	302
VneI	GTGCAC	1 cut(s)	580
XapI	RAATTY	4 cut(s)	7, 501, 758, 857
XceI	RCATGY	1 cut(s)	90
XhoI	CTCGAG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.