Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Forward (+)

59803124 .. 59803369

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0441400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGTATAGTGAGGAGAAGATGCAGAAGGAGATTGAAAAAACCACAGTAGAAACAAAAGCCGCTCTTGAGAAGACTGTTAATGTGAGACTGAGTGCTGCACGGCCAAAAAGCCAACCGAAACAGACCCAAGACTCGAAACTGATCAAGTACAGACCATCACAGACGTCGGTGGCATTCAACTCTGGTGCTAAGGAGAGGATGATAAGGATGTTGTGCGGAAGCGTAACAAACAAGGTATTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.16

Weight (kDa)

9.94

Isoelectric Point (pI)

44.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	167
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	2 cut(s)	60, 216
AcoI	YGGCCR	1 cut(s)	101
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	35, 178
Alw26I	GTCTC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	2 cut(s)	60, 96
BlsI	GCNGC	2 cut(s)	61, 97
BmsI	GCATC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	164
BseGI	GGATG	2 cut(s)	204, 213
BseMII	CTCAG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	60, 216
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	81
BsrBI	CCGCTC	1 cut(s)	62
BssMI	GATC	1 cut(s)	141
BssNI	GRCGYC	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	46, 76
BstACI	GRCGYC	1 cut(s)	164
BstDEI	CTNAG	2 cut(s)	89, 189
BstF5I	GGATG	2 cut(s)	204, 213
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	204, 213
Csp6I	GTAC	1 cut(s)	148
CviJI	RGCY	3 cut(s)	59, 103, 111
CviKI_1	RGCY	3 cut(s)	59, 103, 111
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	89, 189
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	101
FaiI	YATR	2 cut(s)	6, 244
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FbaI	TGATCA	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	60, 96
FokI	GGATG	2 cut(s)	211, 220
Fsp4HI	GCNGC	2 cut(s)	60, 96
GluI	GCNGC	2 cut(s)	60, 96
HaeIII	GGCC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	164
HinfI	GANTC	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	65
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	46, 76
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	22, 98
HpyF3I	CTNAG	2 cut(s)	89, 189
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	164
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	141
LpnPI	CCDG	1 cut(s)	168
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	9
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	143
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	28, 82
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	4, 189
MseI	TTAA	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	173
NdeII	GATC	1 cut(s)	141
PctI	GAATGC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	61, 97
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	60, 96
Sau3AI	GATC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	125
SetI	ASST	2 cut(s)	167, 237
SfaNI	GCATC	1 cut(s)	9
SgeI	CNNG	6 cut(s)	77, 111, 140, 145, 157, 195
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	2 cut(s)	60, 216
TaaI	ACNGT	2 cut(s)	46, 76
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	134
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	95
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.