Prupe.1G318200_v2.0.a1

BEST Arabidopsis thaliana protein match is myosin heavy

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0005374
Physical Location & Seq
Reverse (-)
30601401 .. 30601967
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G318200.1

Sequence Viewer

Length: 384 bp
ATGGCGCAGAAGATCCATCATTTGCAGTCTGTTTTGTTCACTCTTAAGATTTGTTTCCCGTTTCAGCTTCAAGTCTTCAGATTTCAAGGAGACTCATTGGCTACTGATGAGAGGCTTAACGCCCTAGAAGAAGAGAGTCTAAAGCACAAGATGCTGAGGATAGACTCGAAATGGTTGCCTCTCAGGCTCAAAAGGTCATGCACTGATGTACTCAATCCATCTATGGTCTATGGCTATGAGTGTGTGATGTTGTTAGTGTGGTGTTCATTTTGCCATTGGCTTCTTTCTCTTTGCTTTCAAATGCCTGACATTGTTACAGAACAATGGATTCAAATTCAGCGGCTTGAGCAGGCTCTTCATATTACACAAGTTTTTTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.05

Weight (kDa)

6.94

Isoelectric Point (pI)

63.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 340
AclWI GGATC 1 cut(s) 7
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 210
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 4 cut(s) 71, 86, 299, 332
AluBI AGCT 1 cut(s) 67
AluI AGCT 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 7
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 7
BbsI GAAGAC 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 24, 226
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BcoDI GTCTC 1 cut(s) 84
BfaI CTAG 1 cut(s) 125
BfrI CTTAAG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 184
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
BmsI GCATC 1 cut(s) 141
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 365
BseMII CTCAG 2 cut(s) 146, 196
BsmAI GTCTC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 12
BspACI CCGC 1 cut(s) 340
BspCNI CTCAG 2 cut(s) 147, 195
BspPI GGATC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 360
BspTI CTTAAG 1 cut(s) 44
BssMI GATC 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 126, 360
BstAFI CTTAAG 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 155, 182
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 3 cut(s) 151, 184, 346
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 351
CfoI GCGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 209
CviAII CATG 1 cut(s) 198
CviJI RGCY 8 cut(s) 67, 101, 115, 187, 234, 280, 343, 353
CviKI_1 RGCY 8 cut(s) 67, 101, 115, 187, 234, 280, 343, 353
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 2 cut(s) 155, 182
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 126, 360
EarI CTCTTC 2 cut(s) 126, 360
Eco57I CTGAAG 1 cut(s) 61
FaeI CATG 1 cut(s) 201
FaiI YATR 5 cut(s) 199, 224, 231, 237, 360
FatI CATG 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 7
Hin1II CATG 1 cut(s) 201
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 4 cut(s) 92, 136, 164, 328
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 25, 201
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 184, 346
HpyF3I CTNAG 2 cut(s) 155, 182
Hsp92II CATG 1 cut(s) 201
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 360
LpnPI CCDG 3 cut(s) 169, 318, 335
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 5 cut(s) 22, 67, 140, 143, 347
MflI RGATCY 1 cut(s) 12
MluCI AATT 1 cut(s) 333
MlyI GAGTC 3 cut(s) 86, 145, 158
MnlI CCTC 3 cut(s) 105, 150, 189
MseI TTAA 2 cut(s) 45, 117
MspA1I CMGCKG 1 cut(s) 340
MspCI CTTAAG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 151, 184, 346
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 360
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 1 cut(s) 342
PleI GAGTC 3 cut(s) 86, 144, 158
PpsI GAGTC 3 cut(s) 86, 144, 158
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 2 cut(s) 45, 117
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 3 cut(s) 86, 145, 158
SetI ASST 2 cut(s) 69, 197
SfaNI GCATC 1 cut(s) 141
SmlI CTYRAG 2 cut(s) 44, 344
SmoI CTYRAG 2 cut(s) 44, 344
Sse9I AATT 1 cut(s) 333
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 125
TaqI TCGA 1 cut(s) 167
TasI AATT 1 cut(s) 333
TatI WGTACW 1 cut(s) 208
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 45, 117
Tru9I TTAA 2 cut(s) 45, 117
TscAI CASTG 1 cut(s) 208
TspDTI ATGAA 2 cut(s) 255, 347
TspRI CASTG 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 1 cut(s) 333
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.