Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Reverse (-)

5954482 .. 5957794

Gene Structure 3313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG070700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGATGCGTCTAGGGCTTCTCGAAGATGGAAGGAGGGAGATTTTTGTTGGGTAATCTTCCTCCCGAATTTTTTCGCACCAACAGTCAATTCCTGCAAGCACAGAATGAGAGTAGCAGCAATTCATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCCCTCTCCGAAACCACCACCGACTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCTCAAAATCGCTCATTTAGAATCGGTTCTTGCGGACAGCGTTCGGAATCTGAATGAGAGAATCGATCAAATCGAACAGCGCGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCATTTGCAATCTCTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCGGCTCTGGGCCGCTTCAAGGAAGAACAATTTCGACATTCATGTTTTGGAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTACCTCTAAGGCTAAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAGGCTCTTCATATTCAACAATCGAGGACTTTGAGGGTTCAAAGGCAAGTAAGCTATACAAGATGCACATTCTTGAAGTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGCTGCTTGGGTCTAACGTGAGATCCTTTTTCTCACGAACCCTGCATCAATTGGAAAGAGTCTTTATAGCATTTAAGAGGTCTCACCATAAGTTGCAGCATTCCATCAAAGAGGCATTGGAGAAGAATGAATTTACTGCAGCTCTTGCTAATGAGGAATTGGTTTTCTATGTGGCTACTGCCCTCATCATCTTGCCGATAATGATGGCCTGGATTTTTCTCTCCTCAAAATTCCAAGCTAGTTGCTCTATTGACGTGACCTATATGCACTCGCAGACCTATACAAGTCCTGAGGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

38.57

Weight (kDa)

8.99

Isoelectric Point (pI)

58.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AccII	CGCG	1 cut(s)	303
AciI	CCGC	5 cut(s)	153, 254, 310, 424, 435
AclWI	GGATC	2 cut(s)	328, 708
AcsI	RAATTY	3 cut(s)	67, 821, 920
AcuI	CTGAAG	2 cut(s)	551, 710
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	441, 555
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	8 cut(s)	220, 441, 506, 563, 596, 620, 655, 664
AhdI	GACNNNNNGTC	1 cut(s)	322
AjiI	CACGTC	1 cut(s)	946
AjnI	CCWGG	1 cut(s)	899
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	5 cut(s)	223, 633, 694, 833, 929
AluI	AGCT	5 cut(s)	223, 633, 694, 833, 929
Alw26I	GTCTC	2 cut(s)	565, 777
AlwI	GGATC	2 cut(s)	328, 708
AlwNI	CAGNNNCTG	1 cut(s)	574
AoxI	GGCC	2 cut(s)	432, 897
ApeKI	GCWGC	5 cut(s)	116, 577, 694, 787, 830
ApoI	RAATTY	3 cut(s)	67, 821, 920
Asp700I	GAANNNNTTC	4 cut(s)	71, 246, 452, 659
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	398, 767
AxyI	CCTNAGG	1 cut(s)	981
BarI	GAAGNNNNNNTAC	2 cut(s)	402, 434
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	128, 589, 681, 799, 842
BccI	CCATC	4 cut(s)	21, 172, 803, 889
BceAI	ACGGC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	901
BciVI	GTATCC	1 cut(s)	211
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	565, 777
BfaI	CTAG	3 cut(s)	12, 407, 930
BfmI	CTRYAG	2 cut(s)	575, 828
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	7 cut(s)	117, 425, 435, 578, 695, 788, 831
BlsI	GCNGC	7 cut(s)	118, 426, 436, 579, 696, 789, 832
Bme1390I	CCNGG	1 cut(s)	901
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgBI	CACGTC	1 cut(s)	946
BmgT120I	GGNCC	1 cut(s)	432
BmrFI	CCNGG	1 cut(s)	901
BmsI	GCATC	3 cut(s)	478, 632, 745
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	777
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 555
Bse21I	CCTNAGG	1 cut(s)	981
Bse3DI	GCAATG	2 cut(s)	377, 560
BseBI	CCWGG	1 cut(s)	901
BseCI	ATCGAT	1 cut(s)	285
BseGI	GGATG	2 cut(s)	10, 164
BseLI	CCNNNNNNNGG	2 cut(s)	441, 555
BseMI	GCAATG	2 cut(s)	377, 560
BseMII	CTCAG	2 cut(s)	483, 972
BseRI	GAGGAG	3 cut(s)	181, 509, 904
BseXI	GCAGC	5 cut(s)	128, 589, 681, 799, 842
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	434, 899
BshVI	ATCGAT	1 cut(s)	285
BslI	CCNNNNNNNGG	2 cut(s)	441, 555
BsmAI	GTCTC	2 cut(s)	565, 777
BsmI	GAATGC	1 cut(s)	790
BsnI	GGCC	2 cut(s)	434, 899
Bso31I	GGTCTC	1 cut(s)	777
Bsp143I	GATC	4 cut(s)	286, 333, 388, 713
BspACI	CCGC	5 cut(s)	153, 254, 310, 424, 435
BspANI	GGCC	2 cut(s)	434, 899
BspCNI	CTCAG	2 cut(s)	484, 973
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	303
BspMAI	CTGCAG	2 cut(s)	579, 832
BspPI	GGATC	2 cut(s)	328, 708
BspQI	GCTCTTC	1 cut(s)	591
BspTNI	GGTCTC	1 cut(s)	777
BsrDI	GCAATG	2 cut(s)	377, 560
BssMI	GATC	4 cut(s)	286, 333, 388, 713
Bst2UI	CCWGG	1 cut(s)	901
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	3 cut(s)	146, 408, 591
BstAPI	GCANNNNNTGC	2 cut(s)	488, 836
BstC8I	GCNNGC	2 cut(s)	98, 582
BstDEI	CTNAG	4 cut(s)	492, 519, 525, 981
BstEII	GGTNACC	2 cut(s)	511, 544
BstF5I	GGATG	2 cut(s)	10, 164
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	4 cut(s)	289, 336, 391, 716
BstMAI	GTCTC	2 cut(s)	565, 777
BstMBI	GATC	4 cut(s)	286, 333, 388, 713
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 307, 488, 694, 836
BstNI	CCWGG	1 cut(s)	901
BstNSI	RCATGY	1 cut(s)	325
BstPI	GGTNACC	2 cut(s)	511, 544
BstSCI	CCNGG	1 cut(s)	899
BstSFI	CTRYAG	2 cut(s)	575, 828
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	5 cut(s)	128, 589, 681, 799, 842
BstX2I	RGATCY	2 cut(s)	333, 713
BstYI	RGATCY	2 cut(s)	333, 713
Bsu15I	ATCGAT	1 cut(s)	285
Bsu36I	CCTNAGG	1 cut(s)	981
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	434, 899
BsuTUI	ATCGAT	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	946
BtsCI	GGATG	2 cut(s)	10, 164
Cac8I	GCNNGC	2 cut(s)	98, 582
CaiI	CAGNNNCTG	1 cut(s)	574
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	4 cut(s)	322, 383, 464, 541
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	4 cut(s)	492, 519, 525, 981
DpnI	GATC	4 cut(s)	288, 335, 390, 715
DpnII	GATC	4 cut(s)	286, 333, 388, 713
DrdI	GACNNNNNNGTC	1 cut(s)	194
DriI	GACNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	3 cut(s)	146, 408, 591
Eam1105I	GACNNNNNGTC	1 cut(s)	322
EarI	CTCTTC	3 cut(s)	146, 408, 591
Eco31I	GGTCTC	1 cut(s)	777
Eco57I	CTGAAG	2 cut(s)	551, 710
Eco81I	CCTNAGG	1 cut(s)	981
Eco91I	GGTNACC	2 cut(s)	511, 544
EcoO65I	GGTNACC	2 cut(s)	511, 544
EcoRII	CCWGG	1 cut(s)	899
FaeI	CATG	4 cut(s)	325, 386, 467, 544
FatI	CATG	4 cut(s)	321, 382, 463, 540
FauI	CCCGC	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	7 cut(s)	117, 425, 435, 578, 695, 788, 831
FokI	GGATG	2 cut(s)	17, 151
Fsp4HI	GCNGC	7 cut(s)	117, 425, 435, 578, 695, 788, 831
FspBI	CTAG	3 cut(s)	12, 407, 930
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	7 cut(s)	117, 425, 435, 578, 695, 788, 831
HaeIII	GGCC	2 cut(s)	434, 899
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	325, 386, 467, 544
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HinfI	GANTC	7 cut(s)	188, 242, 268, 282, 473, 559, 750
HphI	GGTGA	2 cut(s)	398, 767
Hpy188I	TCNGA	4 cut(s)	175, 267, 273, 570
Hpy188III	TCNNGA	7 cut(s)	21, 64, 407, 652, 674, 726, 980
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	25, 680
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	708, 945
HpyCH4V	TGCA	9 cut(s)	96, 346, 382, 577, 645, 736, 787, 830, 958
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 307, 488, 694, 836
HpyF3I	CTNAG	4 cut(s)	492, 519, 525, 981
HpySE526I	ACGT	2 cut(s)	708, 945
Hsp92II	CATG	4 cut(s)	325, 386, 467, 544
HspAI	GCGC	1 cut(s)	301
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	4 cut(s)	286, 333, 388, 713
LguI	GCTCTTC	1 cut(s)	591
LpnPI	CCDG	6 cut(s)	106, 415, 566, 746, 886, 913
Lsp1109I	GCAGC	5 cut(s)	128, 589, 681, 799, 842
LweI	GCATC	3 cut(s)	478, 632, 745
MaeI	CTAG	3 cut(s)	12, 407, 930
MaeII	ACGT	2 cut(s)	708, 945
MaeIII	GTNAC	3 cut(s)	511, 544, 946
MalI	GATC	4 cut(s)	288, 335, 390, 715
MboI	GATC	4 cut(s)	286, 333, 388, 713
MfeI	CAATTG	1 cut(s)	740
MflI	RGATCY	2 cut(s)	333, 713
MluCI	AATT	9 cut(s)	67, 88, 120, 215, 451, 740, 821, 848, 920
MlyI	GAGTC	3 cut(s)	182, 482, 759
MroXI	GAANNNNTTC	4 cut(s)	71, 246, 452, 659
MseI	TTAA	2 cut(s)	399, 765
MspR9I	CCNGG	1 cut(s)	901
MunI	CAATTG	1 cut(s)	740
Mva1269I	GAATGC	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	901
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	5 cut(s)	14, 307, 488, 694, 836
NdeII	GATC	4 cut(s)	286, 333, 388, 713
NlaIII	CATG	4 cut(s)	325, 386, 467, 544
NmuCI	GTSAC	1 cut(s)	946
NspI	RCATGY	1 cut(s)	325
PciI	ACATGT	1 cut(s)	321
PciSI	GCTCTTC	1 cut(s)	591
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 300
PctI	GAATGC	1 cut(s)	790
PdmI	GAANNNNTTC	4 cut(s)	71, 246, 452, 659
PfeI	GAWTC	4 cut(s)	242, 268, 282, 559
PkrI	GCNGC	7 cut(s)	118, 426, 436, 579, 696, 789, 832
PleI	GAGTC	3 cut(s)	182, 481, 758
PpsI	GAGTC	3 cut(s)	182, 481, 758
PscI	ACATGT	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	899
PspEI	GGTNACC	2 cut(s)	511, 544
PspGI	CCWGG	1 cut(s)	899
PspPI	GGNCC	1 cut(s)	432
PstI	CTGCAG	2 cut(s)	579, 832
PstNI	CAGNNNCTG	1 cut(s)	574
PsuI	RGATCY	2 cut(s)	333, 713
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
SapI	GCTCTTC	1 cut(s)	591
SaqAI	TTAA	2 cut(s)	399, 765
SatI	GCNGC	7 cut(s)	117, 425, 435, 578, 695, 788, 831
Sau3AI	GATC	4 cut(s)	286, 333, 388, 713
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	3 cut(s)	182, 482, 759
ScrFI	CCNGG	1 cut(s)	901
SfaNI	GCATC	3 cut(s)	478, 632, 745
SfcI	CTRYAG	2 cut(s)	575, 828
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	9 cut(s)	67, 88, 120, 215, 451, 740, 821, 848, 920
SsiI	CCGC	5 cut(s)	153, 254, 310, 424, 435
SspMI	CTAG	3 cut(s)	12, 407, 930
StyD4I	CCNGG	1 cut(s)	899
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	711, 948
TaqI	TCGA	5 cut(s)	22, 285, 294, 456, 602
TasI	AATT	9 cut(s)	67, 88, 120, 215, 451, 740, 821, 848, 920
TauI	GCSGC	2 cut(s)	427, 437
TfiI	GAWTC	4 cut(s)	242, 268, 282, 559
Tru1I	TTAA	2 cut(s)	399, 765
Tru9I	TTAA	2 cut(s)	399, 765
TseFI	GTSAC	1 cut(s)	946
TseI	GCWGC	5 cut(s)	116, 577, 694, 787, 830
Tsp45I	GTSAC	1 cut(s)	946
TspDTI	ATGAA	5 cut(s)	113, 452, 548, 578, 834
TspGWI	ACGGA	1 cut(s)	184
XapI	RAATTY	3 cut(s)	67, 821, 920
XbaI	TCTAGA	1 cut(s)	406
XceI	RCATGY	1 cut(s)	325
XmnI	GAANNNNTTC	4 cut(s)	71, 246, 452, 659
XspI	CTAG	3 cut(s)	12, 407, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.