Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005374

Physical Location & Seq

Genomic Coordinates Forward (+)

5059798 .. 5062985

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08660.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGAGTAGTACTTCACCTAATCCCACTCCTATTCCTCTTTCCCGCCTTTTTTCCTTCTCTCTCCCAAACCACCTGTTCAGCTCAGCACACCACCACCGCCAACGACGACGACTCCTCCGTCGTATTCCAGCTCCACCAATTCAAGCTCAGAATCGCTGATTTAGAATCGGTTCTCGCGGAGAGCGTTCGGAATCTGAATGAGAGAGTCGATCAAATCCAACAGCGCGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCGTTTGCAGTCTGTTCTATCCTCTCTCAAGGAAGACTCATTGCTTGCTGATGAAAGACTCAATGCTCTAGAACAAGAGGTACGGCGTCTGTGGGCGGTTTTGAGGAAGAACAATTTCGATATTCATGTTTTGGAGTCTAAAGCGCAAGATGCTGAGGACAGGCTTGAAAGTGTTACCTCTCAGGCTGAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAATTACAGCGACTCCAGCAGGCGCTTCATATTCAACAAGCGAGGACTTTGAGGGTTCAAAGGCAAGTAAGCTATACAAGATGTACATTCTTGAAGTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGGTGCTTGGGTCTAACTTGAGATCTGTTTTCTCAAGAACCCTGCATCAGTTGAATAGAATCTTTTTAGCATTTAAGAGGTCTCACCATCAGTTACAACATTCCATCAAAGAGACATTGGAGAAGAATGGATTTACTGCAGCTCTTGCCAATGAGGAATTGATTTTTTATCTGGCTACTGCCCTCATCATCTTGCCCATAATGTTGGCCTGGATGTTTCTCTCCTCAAAATTCCAAGCTACTTGCTCTCTTGACGTGACCTATATGCAGTCACAGACCTACACAAGTAATACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

305

Amino Acids

35.39

Weight (kDa)

7.19

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005374)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28410 AT1G28410
fragaria_vesca	FvH4_3g08660 FvH4_3g08660
malus_domestica	MD10G1289400.v1.1
prunus_persica	Prupe.1G010000_v2.0.a1 Prupe.1G318200_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.3G304000_v2.0.a1 Prupe.5G112500_v2.0.a1
pyrus_communis	pycom10g24200
rosa_chinensis	RchiOBHm_Chr5g0009131
rosa_laevigata	RLG00000031632
rosa_multiflora	Rmu_sc0005923.1_g000006
rosa_roxburghii	Rroxscaffold_1G00066870 Rroxscaffold_1G00067570
rosa_rugosa	Rorug04G0441400
rosa_samantha	Rh5AG070700 Rh5BG067600 Rh5CG079500 Rh5DG067300
rosa_wichuraiana	Rw5G006610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccII	CGCG	2 cut(s)	179, 228
AciI	CCGC	5 cut(s)	45, 99, 179, 235, 359
AclWI	GGATC	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	845
AcuI	CTGAAG	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	3 cut(s)	12, 345, 571
AfiI	CCNNNNNNNGG	1 cut(s)	480
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	8 cut(s)	145, 431, 488, 521, 545, 580, 589, 670
AhdI	GACNNNNNGTC	1 cut(s)	247
AjiI	CACGTC	1 cut(s)	871
AjnI	CCWGG	1 cut(s)	824
AluBI	AGCT	6 cut(s)	83, 133, 148, 558, 758, 854
AluI	AGCT	6 cut(s)	83, 133, 148, 558, 758, 854
Alw26I	GTCTC	2 cut(s)	702, 722
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	1 cut(s)	822
ApeKI	GCWGC	1 cut(s)	755
ApoI	RAATTY	1 cut(s)	845
Asp700I	GAANNNNTTC	3 cut(s)	171, 377, 584
AspLEI	GCGC	3 cut(s)	228, 409, 511
AsuHPI	GGTGA	2 cut(s)	8, 692
BbsI	GAAGAC	1 cut(s)	303
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	767
BccI	CCATC	2 cut(s)	711, 728
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	702, 722
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	512
BglII	AGATCT	1 cut(s)	638
BisI	GCNGC	1 cut(s)	756
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	757
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	826
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgBI	CACGTC	1 cut(s)	871
BmrFI	CCNGG	1 cut(s)	826
BmsI	GCATC	2 cut(s)	403, 670
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	3 cut(s)	275, 634, 655
BsaHI	GRCGYC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	702
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 101, 128, 131, 483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	480
Bse3DI	GCAATG	2 cut(s)	302, 485
BseBI	CCWGG	1 cut(s)	826
BseGI	GGATG	1 cut(s)	834
BseLI	CCNNNNNNNGG	1 cut(s)	480
BseMI	GCAATG	2 cut(s)	302, 485
BseMII	CTCAG	5 cut(s)	98, 163, 408, 441, 458
BseRI	GAGGAG	2 cut(s)	106, 829
BseXI	GCAGC	1 cut(s)	767
Bsh1236I	CGCG	2 cut(s)	179, 228
BshFI	GGCC	1 cut(s)	824
BslI	CCNNNNNNNGG	1 cut(s)	480
BsmAI	GTCTC	2 cut(s)	702, 722
BsnI	GGCC	1 cut(s)	824
Bso31I	GGTCTC	1 cut(s)	702
Bsp1407I	TGTACA	1 cut(s)	569
Bsp143I	GATC	3 cut(s)	211, 258, 638
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	5 cut(s)	45, 99, 179, 235, 359
BspANI	GGCC	1 cut(s)	824
BspCNI	CTCAG	5 cut(s)	97, 162, 409, 442, 457
BspFNI	CGCG	2 cut(s)	179, 228
BspMAI	CTGCAG	1 cut(s)	757
BspPI	GGATC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	702
BsrDI	GCAATG	2 cut(s)	302, 485
BsrGI	TGTACA	1 cut(s)	569
BssMI	GATC	3 cut(s)	211, 258, 638
BssNI	GRCGYC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	826
Bst4CI	ACNGT	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	349
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	309, 507
BstDEI	CTNAG	5 cut(s)	84, 149, 417, 444, 450
BstEII	GGTNACC	1 cut(s)	469
BstF5I	GGATG	1 cut(s)	834
BstFNI	CGCG	2 cut(s)	179, 228
BstH2I	RGCGCY	1 cut(s)	512
BstHHI	GCGC	3 cut(s)	228, 409, 511
BstKTI	GATC	3 cut(s)	214, 261, 641
BstMAI	GTCTC	2 cut(s)	702, 722
BstMBI	GATC	3 cut(s)	211, 258, 638
BstMWI	GCNNNNNNNGC	5 cut(s)	232, 413, 502, 619, 761
BstNI	CCWGG	1 cut(s)	826
BstNSI	RCATGY	1 cut(s)	250
BstPI	GGTNACC	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	824
BstSFI	CTRYAG	1 cut(s)	753
BstUI	CGCG	2 cut(s)	179, 228
BstV1I	GCAGC	1 cut(s)	767
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	258, 638
BstXI	CCANNNNNNTGG	1 cut(s)	820
BstYI	RGATCY	2 cut(s)	258, 638
BsuRI	GGCC	1 cut(s)	824
BtrI	CACGTC	1 cut(s)	871
BtsCI	GGATG	1 cut(s)	834
Cac8I	GCNNGC	2 cut(s)	309, 507
CfoI	GCGC	3 cut(s)	228, 409, 511
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	11, 344, 570
CviAII	CATG	3 cut(s)	247, 389, 466
CviQI	GTAC	3 cut(s)	11, 344, 570
DdeI	CTNAG	5 cut(s)	84, 149, 417, 444, 450
DpnI	GATC	3 cut(s)	213, 260, 640
DpnII	GATC	3 cut(s)	211, 258, 638
DrdI	GACNNNNNNGTC	1 cut(s)	119
DriI	GACNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1105I	GACNNNNNGTC	1 cut(s)	247
Eco31I	GGTCTC	1 cut(s)	702
Eco57I	CTGAAG	1 cut(s)	635
Eco91I	GGTNACC	1 cut(s)	469
EcoO65I	GGTNACC	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	824
FaeI	CATG	3 cut(s)	250, 392, 469
FaiI	YATR	8 cut(s)	248, 390, 467, 516, 561, 815, 879, 881
FatI	CATG	3 cut(s)	246, 388, 465
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	756
FokI	GGATG	1 cut(s)	841
Fsp4HI	GCNGC	1 cut(s)	756
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	3 cut(s)	227, 408, 510
GluI	GCNGC	1 cut(s)	756
GsuI	CTGGAG	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	824
HgaI	GACGC	1 cut(s)	338
HhaI	GCGC	3 cut(s)	228, 409, 511
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	250, 392, 469
Hin6I	GCGC	3 cut(s)	226, 407, 509
HinP1I	GCGC	3 cut(s)	226, 407, 509
HphI	GGTGA	2 cut(s)	8, 692
Hpy188I	TCNGA	3 cut(s)	152, 192, 198
Hpy188III	TCNNGA	5 cut(s)	332, 577, 599, 651, 866
Hpy99I	CGWCG	3 cut(s)	110, 113, 125
HpyAV	CCTTC	3 cut(s)	66, 605, 610
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	4 cut(s)	271, 661, 755, 883
HpyF10VI	GCNNNNNNNGC	5 cut(s)	232, 413, 502, 619, 761
HpyF3I	CTNAG	5 cut(s)	84, 149, 417, 444, 450
HpySE526I	ACGT	1 cut(s)	870
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	250, 392, 469
HspAI	GCGC	3 cut(s)	226, 407, 509
Kzo9I	GATC	3 cut(s)	211, 258, 638
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	1 cut(s)	767
LweI	GCATC	2 cut(s)	403, 670
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	5 cut(s)	436, 469, 708, 871, 885
MalI	GATC	3 cut(s)	213, 260, 640
MboI	GATC	3 cut(s)	211, 258, 638
MboII	GAAGA	6 cut(s)	268, 308, 382, 466, 577, 751
MflI	RGATCY	2 cut(s)	258, 638
MluCI	AATT	5 cut(s)	140, 376, 488, 773, 845
MlyI	GAGTC	6 cut(s)	107, 216, 293, 315, 407, 492
MmeI	TCCRAC	1 cut(s)	244
MroXI	GAANNNNTTC	3 cut(s)	171, 377, 584
MseI	TTAA	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	826
MvaI	CCWGG	1 cut(s)	826
MvnI	CGCG	2 cut(s)	179, 228
MwoI	GCNNNNNNNGC	5 cut(s)	232, 413, 502, 619, 761
NdeII	GATC	3 cut(s)	211, 258, 638
NlaIII	CATG	3 cut(s)	250, 392, 469
NmuCI	GTSAC	2 cut(s)	871, 885
NspI	RCATGY	1 cut(s)	250
PciI	ACATGT	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 183
PdmI	GAANNNNTTC	3 cut(s)	171, 377, 584
PfeI	GAWTC	5 cut(s)	153, 167, 193, 484, 675
PkrI	GCNGC	1 cut(s)	757
PleI	GAGTC	6 cut(s)	107, 215, 293, 315, 406, 492
PpsI	GAGTC	6 cut(s)	107, 215, 293, 315, 406, 492
PscI	ACATGT	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	824
PspEI	GGTNACC	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	824
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	1 cut(s)	757
PsuI	RGATCY	2 cut(s)	258, 638
RsaI	GTAC	3 cut(s)	12, 345, 571
RsaNI	GTAC	3 cut(s)	11, 344, 570
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	1 cut(s)	756
Sau3AI	GATC	3 cut(s)	211, 258, 638
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	6 cut(s)	107, 216, 293, 315, 407, 492
ScrFI	CCNGG	1 cut(s)	826
SfaNI	GCATC	2 cut(s)	403, 670
SfcI	CTRYAG	1 cut(s)	753
SmlI	CTYRAG	3 cut(s)	290, 634, 649
SmoI	CTYRAG	3 cut(s)	290, 634, 649
Sse9I	AATT	5 cut(s)	140, 376, 488, 773, 845
SsiI	CCGC	5 cut(s)	45, 99, 179, 235, 359
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	824
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	2 cut(s)	210, 381
TasI	AATT	5 cut(s)	140, 376, 488, 773, 845
TatI	WGTACW	2 cut(s)	10, 569
TfiI	GAWTC	5 cut(s)	153, 167, 193, 484, 675
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TseFI	GTSAC	2 cut(s)	871, 885
TseI	GCWGC	1 cut(s)	755
Tsp45I	GTSAC	2 cut(s)	871, 885
TspDTI	ATGAA	4 cut(s)	330, 377, 473, 503
TspGWI	ACGGA	1 cut(s)	109
XapI	RAATTY	1 cut(s)	845
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	1 cut(s)	250
XmnI	GAANNNNTTC	3 cut(s)	171, 377, 584
XspI	CTAG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.