Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Reverse (-)

10036601 .. 10037872

Gene Structure 1272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAGCATATAGAGCAGAAGACGATTATGATTACCTCTTCAAGGTGGTCTTAACCGGAGATTCCGGCGTCGGGAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCACGACTCACGTGCAACCATCGGTGTCGAATTCGCCACACGAAGCATCCAATGCGATGATAAGATCGTCAAGGCTCAAATATGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGAGCGCTTATTACCGAGGAGCTGTTGGTGCATTGCTTGTTTATGACGTGACGCGCCACGTGACATTCGAGAATGTTGAGAGATGGCTAAAGGAGCTTAGGGACCACACGGACGCAAACATTGTGATCATGCTCGTTGGCAACAAAGCTGATCTTCGTCACCTTCGAGCCATCTCAACCGAAGAAGCTAAAGCTTTTGCAGAGAGGGAGAATACCTTTTTCATGGAGACTTCTGCACTTGAAGCTGTGAATGTTGATAATGCTTTCACTGAAGTTCTCACTCAGATTTACAGAGTTGTTAGCAAGAAGGCTCTTGAAGCTGGAGATGATCCAACCACTGCTTTGCCTAAAGGACAGATGATTAATGTTGGAGGCCGAGATGATATCTCAGCCGTTAAAAAACCTGGTTGCTGCTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005829 GO:0005886 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0042221 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896 GO:0071554 GO:0071840 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.27

Weight (kDa)

5.64

Isoelectric Point (pI)

21.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 149	5.6e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	6.9e-63	Ras family
Roc	PF08477	15 - 129	3.4e-34	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	7.8e-06	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	1 cut(s)	222
AccII	CGCG	1 cut(s)	289
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	557
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	525
AcvI	CACGTG	2 cut(s)	128, 295
AcyI	GRCGYC	1 cut(s)	69
AfaI	GTAC	1 cut(s)	224
AfeI	AGCGCT	1 cut(s)	241
AfiI	CCNNNNNNNGG	2 cut(s)	43, 72
AgsI	TTSAA	3 cut(s)	43, 476, 551
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	637
AluBI	AGCT	7 cut(s)	257, 331, 383, 422, 428, 479, 554
AluI	AGCT	7 cut(s)	257, 331, 383, 422, 428, 479, 554
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	1 cut(s)	557
Aor51HI	AGCGCT	1 cut(s)	241
AoxI	GGCC	2 cut(s)	211, 607
ApeKI	GCWGC	1 cut(s)	645
ApoI	RAATTY	1 cut(s)	146
AseI	ATTAAT	1 cut(s)	597
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	2 cut(s)	242, 291
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	2 cut(s)	91, 386
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	222
BauI	CACGAG	1 cut(s)	235
BbrPI	CACGTG	2 cut(s)	128, 295
BbsI	GAAGAC	1 cut(s)	27
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	4 cut(s)	143, 239, 312, 413
BceAI	ACGGC	1 cut(s)	611
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	1 cut(s)	639
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	455
BfoI	RGCGCY	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	1 cut(s)	646
BlsI	GCNGC	1 cut(s)	647
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	337
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	224, 338
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	332
BsaAI	YACGTR	2 cut(s)	128, 295
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 72
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	43, 72
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	530, 636
BseRI	GAGGAG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	632
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	213, 609
BshNI	GGYRCC	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	57, 66, 210
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	43, 72
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	213, 609
Bsp143I	GATC	4 cut(s)	180, 360, 385, 562
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	2 cut(s)	213, 609
BspCNI	CTCAG	2 cut(s)	529, 635
BspFNI	CGCG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	224, 338
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	266
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	4 cut(s)	180, 360, 385, 562
BssNI	GRCGYC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	235
Bst2BI	CACGAG	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	639
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	2 cut(s)	128, 295
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	3 cut(s)	332, 516, 622
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	289
BstH2I	RGCGCY	1 cut(s)	243
BstHHI	GCGC	2 cut(s)	242, 291
BstKTI	GATC	4 cut(s)	183, 363, 388, 565
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	4 cut(s)	180, 360, 385, 562
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 168, 263, 328, 476, 551
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	632
BstV2I	GAAGAC	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	213, 609
BtgZI	GCGATG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	2 cut(s)	501, 570
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	2 cut(s)	242, 291
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	3 cut(s)	58, 295, 356
CsiI	ACCWGGT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	364, 457
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	3 cut(s)	332, 516, 622
DpnI	GATC	4 cut(s)	182, 362, 387, 564
DpnII	GATC	4 cut(s)	180, 360, 385, 562
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	337
Eco47III	AGCGCT	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	525
Eco72I	CACGTG	2 cut(s)	128, 295
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	619
FaeI	CATG	2 cut(s)	367, 460
FaiI	YATR	8 cut(s)	10, 12, 30, 199, 279, 365, 458, 655
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 372, 404
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	2 cut(s)	363, 456
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	646
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	646
GlaI	GCGC	2 cut(s)	241, 290
GluI	GCNGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	576
HaeII	RGCGCY	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	213, 609
HapII	CCGG	3 cut(s)	57, 66, 210
HgaI	GACGC	3 cut(s)	58, 295, 356
HhaI	GCGC	2 cut(s)	242, 291
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	2 cut(s)	367, 460
Hin6I	GCGC	2 cut(s)	240, 289
HinP1I	GCGC	2 cut(s)	240, 289
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	62, 122
HpaII	CCGG	3 cut(s)	57, 66, 210
HphI	GGTGA	2 cut(s)	91, 386
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	4 cut(s)	73, 235, 304, 548
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	407, 535
HpyCH4IV	ACGT	3 cut(s)	127, 282, 294
HpyCH4V	TGCA	5 cut(s)	131, 266, 434, 470, 653
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 168, 263, 328, 476, 551
HpyF3I	CTNAG	3 cut(s)	332, 516, 622
HpySE526I	ACGT	3 cut(s)	127, 282, 294
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	367, 460
HspAI	GCGC	2 cut(s)	240, 289
KpnI	GGTACC	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	180, 360, 385, 562
LmnI	GCTCC	3 cut(s)	5, 254, 328
LpnPI	CCDG	7 cut(s)	70, 79, 115, 223, 540, 624, 651
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	171
MabI	ACCWGGT	1 cut(s)	637
MaeII	ACGT	3 cut(s)	127, 282, 294
MaeIII	GTNAC	3 cut(s)	283, 295, 392
MalI	GATC	4 cut(s)	182, 362, 387, 564
MboI	GATC	4 cut(s)	180, 360, 385, 562
MboII	GAAGA	4 cut(s)	31, 32, 380, 428
MluCI	AATT	2 cut(s)	82, 146
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	583, 590
MnlI	CCTC	4 cut(s)	47, 245, 432, 599
MroNI	GCCGGC	1 cut(s)	209
MseI	TTAA	3 cut(s)	53, 597, 630
MspI	CCGG	3 cut(s)	57, 66, 210
MspR9I	CCNGG	1 cut(s)	639
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	289
MwoI	GCNNNNNNNGC	6 cut(s)	14, 168, 263, 328, 476, 551
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	4 cut(s)	180, 360, 385, 562
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	367, 460
NlaIV	GGNNCC	2 cut(s)	224, 338
NmeAIII	GCCGAG	1 cut(s)	635
NmuCI	GTSAC	3 cut(s)	283, 295, 392
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 397
PdiI	GCCGGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	1 cut(s)	647
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	2 cut(s)	128, 295
PmlI	CACGTG	2 cut(s)	128, 295
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	2 cut(s)	128, 295
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	637
PspCI	CACGTG	2 cut(s)	128, 295
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	224, 338
PspPI	GGNCC	1 cut(s)	337
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	53, 597, 630
SatI	GCNGC	1 cut(s)	646
Sau3AI	GATC	4 cut(s)	180, 360, 385, 562
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	639
SexAI	ACCWGGT	1 cut(s)	637
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	1 cut(s)	337
Sse9I	AATT	2 cut(s)	82, 146
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	637
TaiI	ACGT	3 cut(s)	130, 285, 297
TaqI	TCGA	3 cut(s)	144, 303, 400
TasI	AATT	2 cut(s)	82, 146
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	53, 597, 630
Tru9I	TTAA	3 cut(s)	53, 597, 630
TscAI	CASTG	2 cut(s)	508, 577
TseFI	GTSAC	3 cut(s)	283, 295, 392
TseI	GCWGC	1 cut(s)	645
Tsp45I	GTSAC	3 cut(s)	283, 295, 392
TspDTI	ATGAA	1 cut(s)	445
TspGWI	ACGGA	1 cut(s)	359
TspRI	CASTG	2 cut(s)	508, 577
VpaK11BI	GGWCC	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	597
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.