pycom11g22750

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003297
Physical Location & Seq
Reverse (-)
25735917 .. 25737325
1409 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g22750.1

Sequence Viewer

Length: 651 bp
ATGGCGTACAGGGCCGATGACGACTATGACTATCTGTTCAAGGTGGTGCTGATTGGCGACTCCGGCGTGGGAAAATCCAACCTTTTGTCGAGATTCACGCGCAACGAGTTCAGCCTCGAGTCGAAGTCGACGATCGGCGTCGAGTTCGCCACTCGGAGTATCCACGTTGATGAGAAGATCGTCAAGGCCCAGATTTGGGACACCGCTGGCCAAGAAAGGTACCGTGCAATCACAAGTGCATACTACCGAGGAGCTGTTGGCGCTTTGCTTGTCTATGACGTCACCAGGCATGTGACATTTGAGAATGTTGAGAGATGGTTAAAGGAGCTACGGGATCACACAGACTCCAACATTGTGATAATGCTCGTAGGTAACAAAGCTGACCTGCGTCACCTGCGTGCTGTTTCTGTTGAGGATGCCAAGGCTTTTGCTGAGAGAGAAAACACCTTCTTTATGGAGACATCAGCACTCGAGTCTATGAACGTTGAAAATGCTTTCACTGAAGTCCTAACACAGATATACCATGTAGTCAGCCGGAAAGCACTAGAGGTCGGAGATGATCCTGCAGCATTGCCCAAGGGACAGACCATAAATGTCGGAAACAAGGATGACGTTTCTGCTGTTAAGAAAGATGGTTGCTGTTCTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

217

Amino Acids

24.18

Weight (kDa)

5.44

Isoelectric Point (pI)

25.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 13 - 168 2.5e-12 ADP-ribosylation factor family
Ras PF00071 14 - 174 3.9e-64 Ras family
Roc PF08477 14 - 128 2.1e-35 Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1 PF01926 14 - 120 8.2e-07 50S ribosome-binding GTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 402
AatII GACGTC 1 cut(s) 282
Acc36I ACCTGC 2 cut(s) 393, 402
Acc65I GGTACC 1 cut(s) 219
AccB1I GGYRCC 1 cut(s) 219
AccI GTMKAC 1 cut(s) 128
AccII CGCG 1 cut(s) 100
AciI CCGC 1 cut(s) 204
AclI AACGTT 1 cut(s) 483
AclWI GGATC 2 cut(s) 342, 554
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 522
AcyI GRCGYC 2 cut(s) 138, 279
AfaI GTAC 2 cut(s) 8, 221
AfiI CCNNNNNNNGG 2 cut(s) 195, 196
AgsI TTSAA 2 cut(s) 40, 488
AjnI CCWGG 1 cut(s) 284
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 3 cut(s) 254, 328, 380
AluI AGCT 3 cut(s) 254, 328, 380
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 2 cut(s) 342, 554
Ama87I CYCGRG 2 cut(s) 116, 470
AoxI GGCC 3 cut(s) 12, 186, 208
ApeKI GCWGC 1 cut(s) 566
Asp718I GGTACC 1 cut(s) 219
AspLEI GCGC 2 cut(s) 102, 263
AspS9I GGNCC 2 cut(s) 12, 187
AsuHPI GGTGA 2 cut(s) 274, 383
AvaI CYCGRG 2 cut(s) 116, 470
BalI TGGCCA 1 cut(s) 210
BanI GGYRCC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 578
BccI CCATC 2 cut(s) 309, 626
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 564
BfoI RGCGCY 1 cut(s) 264
BfuAI ACCTGC 2 cut(s) 393, 402
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 1 cut(s) 286
BmeT110I CYCGRG 2 cut(s) 116, 470
BmgT120I GGNCC 2 cut(s) 12, 187
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 406
BoxI GACNNNNGTC 1 cut(s) 387
BsaHI GRCGYC 2 cut(s) 138, 279
BsaJI CCNNGG 3 cut(s) 247, 420, 576
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 196
Bse3DI GCAATG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 3 cut(s) 247, 420, 576
BseGI GGATG 2 cut(s) 421, 613
BseLI CCNNNNNNNGG 2 cut(s) 195, 196
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 578
Bsh1236I CGCG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 14, 188, 210
BshNI GGYRCC 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 135
BsiHKCI CYCGRG 2 cut(s) 116, 470
BsiSI CCGG 2 cut(s) 63, 535
BslFI GGGAC 2 cut(s) 212, 594
BslI CCNNNNNNNGG 2 cut(s) 195, 196
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 2 cut(s) 212, 594
BsnI GGCC 3 cut(s) 14, 188, 210
BsoBI CYCGRG 2 cut(s) 116, 470
Bsp143I GATC 4 cut(s) 132, 177, 334, 559
BspACI CCGC 1 cut(s) 204
BspANI GGCC 3 cut(s) 14, 188, 210
BspCNI CTCAG 1 cut(s) 424
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 221
BspMAI CTGCAG 1 cut(s) 568
BspMI ACCTGC 2 cut(s) 393, 402
BspPI GGATC 2 cut(s) 342, 554
BspT107I GGYRCC 1 cut(s) 219
BsrDI GCAATG 1 cut(s) 569
BssECI CCNNGG 3 cut(s) 247, 420, 576
BssMI GATC 4 cut(s) 132, 177, 334, 559
BssNI GRCGYC 2 cut(s) 138, 279
BssT1I CCWWGG 2 cut(s) 420, 576
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 1 cut(s) 224
BstACI GRCGYC 2 cut(s) 138, 279
BstC8I GCNNGC 2 cut(s) 208, 399
BstDEI CTNAG 1 cut(s) 432
BstF5I GGATG 2 cut(s) 421, 613
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 2 cut(s) 102, 263
BstKTI GATC 4 cut(s) 135, 180, 337, 562
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 4 cut(s) 132, 177, 334, 559
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 4 cut(s) 11, 63, 260, 394
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 293
BstPAI GACNNNNGTC 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 578
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 3 cut(s) 14, 188, 210
BtsCI GGATG 2 cut(s) 421, 613
BtsIMutI CAGTG 1 cut(s) 498
BveI ACCTGC 2 cut(s) 393, 402
Cac8I GCNNGC 2 cut(s) 208, 399
CfoI GCGC 2 cut(s) 102, 263
Cfr13I GGNCC 2 cut(s) 12, 187
CseI GACGC 2 cut(s) 127, 377
Csp6I GTAC 2 cut(s) 7, 220
CviAII CATG 2 cut(s) 290, 524
CviJI RGCY 9 cut(s) 14, 114, 188, 210, 254, 328, 380, 425, 534
CviKI_1 RGCY 9 cut(s) 14, 114, 188, 210, 254, 328, 380, 425, 534
CviQI GTAC 2 cut(s) 7, 220
DdeI CTNAG 1 cut(s) 432
DpnI GATC 4 cut(s) 134, 179, 336, 561
DpnII GATC 4 cut(s) 132, 177, 334, 559
EaeI YGGCCR 1 cut(s) 208
Eco130I CCWWGG 2 cut(s) 420, 576
Eco57I CTGAAG 1 cut(s) 522
Eco88I CYCGRG 2 cut(s) 116, 470
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 420, 576
ErhI CCWWGG 2 cut(s) 420, 576
FaeI CATG 2 cut(s) 293, 527
FaiI YATR 9 cut(s) 27, 241, 276, 291, 455, 479, 520, 525, 590
FaqI GGGAC 2 cut(s) 212, 594
FatI CATG 2 cut(s) 289, 523
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 2 cut(s) 428, 620
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 1 cut(s) 545
GlaI GCGC 2 cut(s) 101, 262
GluI GCNGC 1 cut(s) 567
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 3 cut(s) 14, 188, 210
HapII CCGG 2 cut(s) 63, 535
HgaI GACGC 2 cut(s) 127, 377
HhaI GCGC 2 cut(s) 102, 263
Hin1I GRCGYC 2 cut(s) 138, 279
Hin1II CATG 2 cut(s) 293, 527
Hin6I GCGC 2 cut(s) 100, 261
HinP1I GCGC 2 cut(s) 100, 261
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 5 cut(s) 59, 93, 119, 344, 473
HpaII CCGG 2 cut(s) 63, 535
HphI GGTGA 2 cut(s) 274, 383
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 156, 554, 599
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 2 cut(s) 133, 143
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 1 cut(s) 224
HpyCH4IV ACGT 4 cut(s) 165, 279, 483, 612
HpyCH4V TGCA 3 cut(s) 227, 239, 566
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 63, 260, 394
HpyF3I CTNAG 1 cut(s) 432
HpySE526I ACGT 4 cut(s) 165, 279, 483, 612
Hsp92I GRCGYC 2 cut(s) 138, 279
Hsp92II CATG 2 cut(s) 293, 527
HspAI GCGC 2 cut(s) 100, 261
KpnI GGTACC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 132, 177, 334, 559
LmnI GCTCC 2 cut(s) 251, 325
LpnPI CCDG 9 cut(s) 76, 192, 203, 271, 298, 398, 407, 548, 576
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 545
MaeII ACGT 4 cut(s) 165, 279, 483, 612
MaeIII GTNAC 4 cut(s) 280, 292, 371, 389
MalI GATC 4 cut(s) 134, 179, 336, 561
MboI GATC 4 cut(s) 132, 177, 334, 559
MboII GAAGA 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 210
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 4 cut(s) 53, 128, 338, 482
MmeI TCCRAC 4 cut(s) 102, 372, 532, 577
MnlI CCTC 4 cut(s) 125, 242, 406, 541
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 2 cut(s) 320, 624
MslI CAYNNNNRTG 2 cut(s) 168, 396
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 2 cut(s) 63, 535
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 4 cut(s) 11, 63, 260, 394
NdeII GATC 4 cut(s) 132, 177, 334, 559
NlaIII CATG 2 cut(s) 293, 527
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 3 cut(s) 280, 292, 389
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 396
PaeR7I CTCGAG 2 cut(s) 116, 470
PaqCI CACCTGC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 568
Ple19I CGATCG 1 cut(s) 135
PleI GAGTC 4 cut(s) 53, 127, 338, 481
PpsI GAGTC 4 cut(s) 53, 127, 338, 481
PshAI GACNNNNGTC 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 2 cut(s) 12, 187
PspXI VCTCGAGB 2 cut(s) 116, 470
PstI CTGCAG 1 cut(s) 568
PvuI CGATCG 1 cut(s) 135
RsaI GTAC 2 cut(s) 8, 221
RsaNI GTAC 2 cut(s) 7, 220
RseI CAYNNNNRTG 2 cut(s) 168, 396
SalI GTCGAC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 320, 624
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 4 cut(s) 132, 177, 334, 559
Sau96I GGNCC 2 cut(s) 12, 187
SchI GAGTC 4 cut(s) 53, 128, 338, 482
ScrFI CCNGG 1 cut(s) 286
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 2 cut(s) 116, 470
SlaI CTCGAG 2 cut(s) 116, 470
SmiMI CAYNNNNRTG 2 cut(s) 168, 396
SmlI CTYRAG 2 cut(s) 116, 470
SmoI CTYRAG 2 cut(s) 116, 470
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 2 cut(s) 420, 576
TaaI ACNGT 1 cut(s) 224
TaiI ACGT 4 cut(s) 168, 282, 486, 615
TaqI TCGA 6 cut(s) 89, 117, 122, 128, 141, 471
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 320, 624
Tru9I TTAA 2 cut(s) 320, 624
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 3 cut(s) 280, 292, 389
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 3 cut(s) 280, 292, 389
TspDTI ATGAA 1 cut(s) 494
TspRI CASTG 1 cut(s) 505
XceI RCATGY 1 cut(s) 293
XhoI CTCGAG 2 cut(s) 116, 470
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 1 cut(s) 545
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.