Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Reverse (-)

7255777 .. 7257525

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031679

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGAGCGTACAGAGCTGATGATGATTACGATTACTTGTTCAAGGTGGTGTTGATCGGCGACTCTGGGGTTGGCAAATCGAACCTGTTGTCTAGGTTCACGAGGAATGAGTTCAGCCTTGAATCAAAGTCCACCATTGGGGTTGAGTTTGCCACCAGAAGCATTAGGGTCGATGATAAGGTGGTTAAGGCCCAGATTTGGGACACTGCTGGTCAAGAAAGGTATCGTGCAATTACAAGTGCATATTATCGAGGTGCAGTCGGTGCATTACTAGTCTATGATGTTACTCGTCATGTCACATTTGAAAATGTGGAAAGATGGTTGAAGGAGCTTCGGGACCATACAGATGCCAACATTGTGATCATGTTGGTGGGAAACAAGGGAGATCTGCGTCACCTGCGAGCCGTTTCCACTGAGGATGCCCAGGCTTTTGCTGAACGAGAGAATACCTTTTTCATGGAAACATCTGCCCTTGAGTCCATGAATGTTGACAATGCTTTCACAGAAGTGCTGAGCCAAATCTACCGTGTTGTAAGCAGGAAGGCCCTAGACATTGGGGATGATCCAGCAGCCTTGCCCAAGGGACAGACGATCAATGTTGGTGGCAAGGATGATGTATCAGCCGTGAAGAAAGTTGGATGTTGCTCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.15

Weight (kDa)

5.49

Isoelectric Point (pI)

21.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 168	3.5e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	5.4e-64	Ras family
Roc	PF08477	15 - 129	6.8e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	7.2e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	3 cut(s)	138, 198, 199
AgsI	TTSAA	4 cut(s)	43, 122, 305, 325
AhlI	ACTAGT	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	423
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	2 cut(s)	17, 331
AluI	AGCT	2 cut(s)	17, 331
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	189, 543
ApeKI	GCWGC	1 cut(s)	569
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	110
AspS9I	GGNCC	3 cut(s)	190, 337, 544
AsuHPI	GGTGA	1 cut(s)	386
AvaII	GGWCC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	2 cut(s)	389, 608
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	425
BclI	TGATCA	1 cut(s)	360
BcuI	ACTAGT	1 cut(s)	271
BfaI	CTAG	3 cut(s)	93, 272, 548
BfuAI	ACCTGC	1 cut(s)	405
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	570
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	425
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	3 cut(s)	190, 337, 544
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	425
BmsI	GCATC	2 cut(s)	337, 409
Bpu1102I	GCTNAGC	1 cut(s)	512
BpuEI	CTTGAG	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	423, 579
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 198, 199
BseBI	CCWGG	1 cut(s)	425
BseDI	CCNNGG	2 cut(s)	423, 579
BseGI	GGATG	4 cut(s)	424, 565, 616, 644
BseLI	CCNNNNNNNGG	3 cut(s)	138, 198, 199
BseMII	CTCAG	2 cut(s)	405, 503
BseXI	GCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	276
BshFI	GGCC	2 cut(s)	191, 545
BslFI	GGGAC	3 cut(s)	215, 350, 597
BslI	CCNNNNNNNGG	3 cut(s)	138, 198, 199
BsmFI	GGGAC	3 cut(s)	215, 350, 597
BsnI	GGCC	2 cut(s)	191, 545
Bsp143I	GATC	5 cut(s)	54, 360, 385, 562, 591
Bsp1720I	GCTNAGC	1 cut(s)	512
BspANI	GGCC	2 cut(s)	191, 545
BspCNI	CTCAG	2 cut(s)	406, 504
BspLI	GGNNCC	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	423, 579
BssMI	GATC	5 cut(s)	54, 360, 385, 562, 591
BssSI	CACGAG	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	579
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	2 cut(s)	414, 512
BstF5I	GGATG	4 cut(s)	424, 565, 616, 644
BstKTI	GATC	5 cut(s)	57, 363, 388, 565, 594
BstMBI	GATC	5 cut(s)	54, 360, 385, 562, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 263, 397
BstNI	CCWGG	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	191, 545
BtsCI	GGATG	4 cut(s)	424, 565, 616, 644
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 411
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	402
Cfr13I	GGNCC	3 cut(s)	190, 337, 544
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	10
CspCI	CAANNNNNGTGG	2 cut(s)	583, 618
CviAII	CATG	4 cut(s)	293, 364, 457, 481
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	2 cut(s)	414, 512
DpnI	GATC	5 cut(s)	56, 362, 387, 564, 593
DpnII	GATC	5 cut(s)	54, 360, 385, 562, 591
Eco130I	CCWWGG	1 cut(s)	579
Eco47I	GGWCC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	4 cut(s)	296, 367, 460, 484
FaiI	YATR	7 cut(s)	244, 279, 294, 342, 365, 458, 482
FaqI	GGGAC	3 cut(s)	215, 350, 597
FatI	CATG	4 cut(s)	292, 363, 456, 480
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	3 cut(s)	431, 572, 623
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	3 cut(s)	93, 272, 548
GluI	GCNGC	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	191, 545
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	4 cut(s)	296, 367, 460, 484
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	62, 122, 476
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	99, 132, 490
Hpy188III	TCNNGA	3 cut(s)	100, 215, 335
Hpy8I	GTNNAC	3 cut(s)	99, 132, 490
HpyAV	CCTTC	2 cut(s)	319, 535
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4V	TGCA	4 cut(s)	230, 242, 257, 266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 263, 397
HpyF3I	CTNAG	2 cut(s)	414, 512
Hsp92II	CATG	4 cut(s)	296, 367, 460, 484
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	54, 360, 385, 562, 591
LmnI	GCTCC	3 cut(s)	5, 328, 650
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	2 cut(s)	337, 409
MaeI	CTAG	3 cut(s)	93, 272, 548
MaeIII	GTNAC	3 cut(s)	283, 295, 392
MalI	GATC	5 cut(s)	56, 362, 387, 564, 593
MboI	GATC	5 cut(s)	54, 360, 385, 562, 591
MboII	GAAGA	1 cut(s)	640
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	56, 485
MmeI	TCCRAC	1 cut(s)	616
MnlI	CCTC	3 cut(s)	96, 245, 409
MroXI	GAANNNNTTC	1 cut(s)	110
MseI	TTAA	2 cut(s)	186, 652
MslI	CAYNNNNRTG	3 cut(s)	345, 368, 506
MspR9I	CCNGG	1 cut(s)	425
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	14, 263, 397
NdeII	GATC	5 cut(s)	54, 360, 385, 562, 591
NlaIII	CATG	4 cut(s)	296, 367, 460, 484
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	2 cut(s)	295, 392
OliI	CACNNNNGTG	1 cut(s)	506
PaqCI	CACCTGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	2 cut(s)	56, 484
PpsI	GAGTC	2 cut(s)	56, 484
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	3 cut(s)	190, 337, 544
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	3 cut(s)	345, 368, 506
SaqAI	TTAA	2 cut(s)	186, 652
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	5 cut(s)	54, 360, 385, 562, 591
Sau96I	GGNCC	3 cut(s)	190, 337, 544
SchI	GAGTC	2 cut(s)	56, 485
ScrFI	CCNGG	1 cut(s)	425
SfaNI	GCATC	2 cut(s)	337, 409
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	3 cut(s)	345, 368, 506
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SpeI	ACTAGT	1 cut(s)	271
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	3 cut(s)	93, 272, 548
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	527
TaqI	TCGA	3 cut(s)	80, 171, 250
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	2 cut(s)	186, 652
Tru9I	TTAA	2 cut(s)	186, 652
TscAI	CASTG	2 cut(s)	211, 418
TseFI	GTSAC	2 cut(s)	295, 392
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	2 cut(s)	295, 392
TspDTI	ATGAA	2 cut(s)	445, 497
TspRI	CASTG	2 cut(s)	211, 418
VpaK11BI	GGWCC	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	3 cut(s)	93, 272, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.