Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Forward (+)

12277938 .. 12279833

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCTACCGGTCGGACGACGACTACGACTACCTCTTCAAGGTCGTCTTGATCGGCGACTCCGGCGTCGGCAAATCCAACCTCTTGTCCAGGTTCACGCGCAACGAGTTCAGCCTCGAGTCTAAGTCCACCATCGGCGTCGAGTTTGCCACCCGGAGCATCCACGTCGACGATAAGATCGTAAAGGCCCAGATTTGGGACACCGCCGGCCAAGAAAGGTACCGAGCGATTACAAGTGCATACTATCGAGGAGCTGTTGGTGCTTTACTTGTGTATGATGTCACCCGACATGTTACATTTGAGAATGTTGAGAGATGGTTAAAGGAGCTACGAGATCACACAGATTCCAATATAGTGATAATGCTTGTGGGCAACAAGGCTGACCTGCGTCACCTGCGTGCGGTTTCTGTTGAGGATGCTAAAGCCTTTGCTGAGAGAGAAAACACCTTCTTTATGGAGACGTCAGCACTTGAGTCTATGAATGTTGAAAATGCATTCAGTGAGGTCTTGACCCAAATATATCAAGTTGTTAGCCGGAAAGCACTCGAGGTTGGAGATGATCCTGCAGCCGTGCCTAAAGGACAAACCATAAATGTTGGAGGCAAGGATGATGTTTCAGCCATTAAGAAAGCTGGGTGTTGTTCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04961 ko04962 ko04972 map04144 map04961 map04962 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

217

Amino Acids

24.06

Weight (kDa)

5.46

Isoelectric Point (pI)

25.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	13 - 169	2.4e-12	ADP-ribosylation factor family
Ras	PF00071	14 - 174	3.6e-64	Ras family
Roc	PF08477	14 - 128	2.3e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	14 - 120	8.4e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	402
AasI	GACNNNNNNGTC	1 cut(s)	65
AatII	GACGTC	1 cut(s)	464
Acc36I	ACCTGC	2 cut(s)	393, 402
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	100
AciI	CCGC	2 cut(s)	204, 401
AclWI	GGATC	1 cut(s)	554
AcoI	YGGCCR	1 cut(s)	208
AcyI	GRCGYC	3 cut(s)	66, 138, 461
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	4 cut(s)	40, 195, 196, 400
AflIII	ACRYGT	1 cut(s)	289
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	40, 488
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	89
AleI	CACNNNNGTG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	254, 328, 632
AluI	AGCT	3 cut(s)	254, 328, 632
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	2 cut(s)	116, 545
AoxI	GGCC	3 cut(s)	3, 186, 208
ApeKI	GCWGC	1 cut(s)	566
AsiGI	ACCGGT	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	2 cut(s)	274, 383
AvaI	CYCGRG	2 cut(s)	116, 545
BanI	GGYRCC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	2 cut(s)	140, 309
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	2 cut(s)	393, 402
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	91, 154
BmeT110I	CYCGRG	2 cut(s)	116, 545
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	2 cut(s)	91, 154
BmsI	GCATC	2 cut(s)	168, 406
BoxI	GACNNNNGTC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	491
BpuMI	CCSGG	1 cut(s)	154
BsaHI	GRCGYC	3 cut(s)	66, 138, 461
BsaWI	WCCGGW	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 195, 196, 400
Bse118I	RCCGGY	2 cut(s)	9, 206
BseBI	CCWGG	1 cut(s)	91
BseGI	GGATG	3 cut(s)	159, 421, 613
BseLI	CCNNNNNNNGG	4 cut(s)	40, 195, 196, 400
BseMII	CTCAG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	578
BseYI	CCCAGC	1 cut(s)	632
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	3 cut(s)	5, 188, 210
BshNI	GGYRCC	1 cut(s)	219
BshTI	ACCGGT	1 cut(s)	9
BsiEI	CGRYCG	1 cut(s)	14
BsiHKCI	CYCGRG	2 cut(s)	116, 545
BsiSI	CCGG	5 cut(s)	10, 63, 154, 207, 535
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	4 cut(s)	40, 195, 196, 400
BsmAI	GTCTC	1 cut(s)	452
BsmBI	CGTCTC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	5, 188, 210
BsoBI	CYCGRG	2 cut(s)	116, 545
Bsp143I	GATC	4 cut(s)	51, 177, 334, 559
BspACI	CCGC	2 cut(s)	204, 401
BspANI	GGCC	3 cut(s)	5, 188, 210
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	221
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	2 cut(s)	393, 402
BspPI	GGATC	1 cut(s)	554
BspT107I	GGYRCC	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	9, 206
BssAI	RCCGGY	2 cut(s)	9, 206
BssMI	GATC	4 cut(s)	51, 177, 334, 559
BssNI	GRCGYC	3 cut(s)	66, 138, 461
Bst2UI	CCWGG	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	3 cut(s)	66, 138, 461
BstC8I	GCNNGC	2 cut(s)	208, 399
BstDEI	CTNAG	2 cut(s)	123, 432
BstENI	CCTNNNNNAGG	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	159, 421, 613
BstFNI	CGCG	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	4 cut(s)	54, 180, 337, 562
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	4 cut(s)	51, 177, 334, 559
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 260, 394
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	293
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	89, 152
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	5, 188, 210
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	3 cut(s)	159, 421, 613
BtsIMutI	CAGTG	1 cut(s)	505
BveI	ACCTGC	2 cut(s)	393, 402
Cac8I	GCNNGC	2 cut(s)	208, 399
CfoI	GCGC	1 cut(s)	102
Cfr10I	RCCGGY	2 cut(s)	9, 206
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	3 cut(s)	55, 127, 377
Csp6I	GTAC	1 cut(s)	220
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	1 cut(s)	290
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	123, 432
DpnI	GATC	4 cut(s)	53, 179, 336, 561
DpnII	GATC	4 cut(s)	51, 177, 334, 559
DrdI	GACNNNNNNGTC	1 cut(s)	65
DseDI	GACNNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco88I	CYCGRG	2 cut(s)	116, 545
EcoNI	CCTNNNNNAGG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	89
EcoT22I	ATGCAT	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	452
FaeI	CATG	1 cut(s)	293
FaiI	YATR	8 cut(s)	241, 276, 291, 353, 455, 479, 520, 590
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	3 cut(s)	146, 428, 620
Fsp4HI	GCNGC	1 cut(s)	567
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	567
GsaI	CCCAGC	1 cut(s)	636
HaeIII	GGCC	3 cut(s)	5, 188, 210
HapII	CCGG	5 cut(s)	10, 63, 154, 207, 535
HgaI	GACGC	3 cut(s)	55, 127, 377
HhaI	GCGC	1 cut(s)	102
Hin1I	GRCGYC	3 cut(s)	66, 138, 461
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	4 cut(s)	59, 119, 344, 473
HpaII	CCGG	5 cut(s)	10, 63, 154, 207, 535
HphI	GGTGA	2 cut(s)	274, 383
Hpy166II	GTNNAC	3 cut(s)	96, 129, 169
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	49, 508
Hpy8I	GTNNAC	3 cut(s)	96, 129, 169
Hpy99I	CGWCG	5 cut(s)	23, 71, 143, 170, 173
HpyAV	CCTTC	1 cut(s)	457
HpyCH4IV	ACGT	2 cut(s)	165, 461
HpyCH4V	TGCA	3 cut(s)	239, 494, 566
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 260, 394
HpyF3I	CTNAG	2 cut(s)	123, 432
HpySE526I	ACGT	2 cut(s)	165, 461
Hsp92I	GRCGYC	3 cut(s)	66, 138, 461
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	100
KpnI	GGTACC	1 cut(s)	223
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	4 cut(s)	51, 177, 334, 559
LmnI	GCTCC	3 cut(s)	156, 251, 325
Lsp1109I	GCAGC	1 cut(s)	578
LweI	GCATC	2 cut(s)	168, 406
MaeII	ACGT	2 cut(s)	165, 461
MaeIII	GTNAC	3 cut(s)	280, 292, 389
MalI	GATC	4 cut(s)	53, 179, 336, 561
MboI	GATC	4 cut(s)	51, 177, 334, 559
MboII	GAAGA	1 cut(s)	28
MlyI	GAGTC	3 cut(s)	53, 128, 482
MmeI	TCCRAC	3 cut(s)	102, 532, 577
MnlI	CCTC	8 cut(s)	44, 92, 125, 242, 406, 496, 541, 593
Mph1103I	ATGCAT	1 cut(s)	496
MroNI	GCCGGC	1 cut(s)	206
MseI	TTAA	2 cut(s)	320, 624
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	5 cut(s)	10, 63, 154, 207, 535
MspR9I	CCNGG	2 cut(s)	91, 154
Mva1269I	GAATGC	1 cut(s)	494
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	63, 260, 394
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	154
NdeII	GATC	4 cut(s)	51, 177, 334, 559
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	2 cut(s)	280, 389
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	396
PaeR7I	CTCGAG	2 cut(s)	116, 545
PaqCI	CACCTGC	1 cut(s)	402
PciI	ACATGT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 177
PctI	GAATGC	1 cut(s)	494
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	3 cut(s)	53, 127, 481
PpsI	GAGTC	3 cut(s)	53, 127, 481
PscI	ACATGT	1 cut(s)	289
PshAI	GACNNNNGTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	187
PspXI	VCTCGAGB	2 cut(s)	116, 545
PstI	CTGCAG	1 cut(s)	568
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	396
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	2 cut(s)	320, 624
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	4 cut(s)	51, 177, 334, 559
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	3 cut(s)	53, 128, 482
ScrFI	CCNGG	2 cut(s)	91, 154
SfaNI	GCATC	2 cut(s)	168, 406
SfcI	CTRYAG	1 cut(s)	564
Sfr274I	CTCGAG	2 cut(s)	116, 545
SgrDI	CGTCGACG	1 cut(s)	167
SlaI	CTCGAG	2 cut(s)	116, 545
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	3 cut(s)	116, 470, 545
SmoI	CTYRAG	3 cut(s)	116, 470, 545
SsiI	CCGC	2 cut(s)	204, 401
StyD4I	CCNGG	2 cut(s)	89, 152
TaiI	ACGT	2 cut(s)	168, 464
TaqI	TCGA	5 cut(s)	117, 141, 168, 247, 546
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	320, 624
Tru9I	TTAA	2 cut(s)	320, 624
TscAI	CASTG	1 cut(s)	505
TseFI	GTSAC	2 cut(s)	280, 389
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	2 cut(s)	280, 389
TspDTI	ATGAA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	505
XagI	CCTNNNNNAGG	1 cut(s)	38
XceI	RCATGY	1 cut(s)	293
XhoI	CTCGAG	2 cut(s)	116, 545
XmiI	GTMKAC	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	462
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.