Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003297

Physical Location & Seq

Genomic Coordinates Forward (+)

37616635 .. 37619128

Gene Structure 2494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1286600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGGGCGTACAGAGCCGATGACGATTACGATTACTTGTTCAAGGTGGTGCTGATCGGCGACTCTGGCGTCGGAAAATCGAACCTTTTGTCCCGGTTTACGAGGAACGAGTTCAGCCTTGAATCCAAGTCCACCATTGGCGTCGAGTTCGCCACCAGAAGCATTCGGGTCGACGATAAGGTCGTCAAGGCCCAGATTTGGGACACCGCCGGCCAGGAAAGGTATCGTGCAATCACAAGCGCATACTATCGAGGTGCCGTTGGGGCCTTACTTGTCTATGACGTTACTCGTCATGTTACATTTGAGAATGTGGAGAGATGGCTGAAGGAGCTTCGCGATCACACAGATGCCAACATTGTGATCATGCTAGTGGGAAACAAGGGAGATCTGCGTCACCTACGAGCTGTTTCCACTGACGACGCTAAGGCGTTTGCTGAACGAGAGAACACCTTTTTCATGGAAACGTCTGCCCTCGAGTCTATGAACGTCGACAATGCTTTCACCGAAGTGCTGACTCAAATCCACCGTGTTGTGAGCCGGAAGGCCCTTGACATTGGGGATGACCCAGCAGCCTTGCCCAAGGGACAAACAATCAATGTCGGGGGAAAGGACGACGTATCAGCTGTGAAGCAAGTCGGGTGTTGCTCTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

218

Amino Acids

24.12

Weight (kDa)

5.63

Isoelectric Point (pI)

21.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	14 - 167	4.8e-12	ADP-ribosylation factor family
Ras	PF00071	15 - 175	1.3e-63	Ras family
Roc	PF08477	15 - 129	6.8e-35	Ras of Complex, Roc, domain of DAPkinase
MMR_HSR1	PF01926	15 - 121	7.2e-07	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28550 AT2G33870 AT3G15060 AT4G18430 AT5G60860
fragaria_vesca	FvH4_3g08320 FvH4_3g19070
malus_domestica	MD03G1237100.v1.1 MD05G1307500.v1.1 MD10G1286600.v1.1 MD11G1257700.v1.1 MD11G1257800.v1.1
prunus_persica	Prupe.4G055200_v2.0.a1 Prupe.4G172300_v2.0.a1
pyrus_communis	pycom05g28420 pycom11g22750
rosa_chinensis	RchiOBHm_Chr5g0009681 RchiOBHm_Chr5g0031861
rosa_laevigata	RLG00000031679 RLG00000033354
rosa_multiflora	Rmu_sc0006311.1_g000001 Rmu_sc0011639.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048410 Rroxscaffold_1G00066530
rosa_rugosa	Rorug04G0444700 Rorug05G0128300
rosa_samantha	Rh5AG076300 Rh5AG222400 Rh5BG071500 Rh5BG222700 Rh5CG084000 Rh5CG245900 Rh5DG072000 Rh5DG227600
rosa_wichuraiana	Rw5G007030 Rw5G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	68, 179
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	2 cut(s)	171, 489
AccII	CGCG	1 cut(s)	336
AciI	CCGC	1 cut(s)	207
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	344
AcyI	GRCGYC	2 cut(s)	69, 141
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	198, 199
AgsI	TTSAA	2 cut(s)	43, 122
AjnI	CCWGG	1 cut(s)	213
AleI	CACNNNNGTG	1 cut(s)	506
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	3 cut(s)	331, 404, 623
AluI	AGCT	3 cut(s)	331, 404, 623
Ama87I	CYCGRG	1 cut(s)	473
AoxI	GGCC	4 cut(s)	189, 211, 264, 543
ApeKI	GCWGC	1 cut(s)	569
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	190, 264, 544
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	386, 493
AvaI	CYCGRG	1 cut(s)	473
BanI	GGYRCC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	1 cut(s)	312
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	94
BfaI	CTAG	1 cut(s)	368
BglI	GCCNNNNNGGC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	1 cut(s)	570
BlsI	GCNGC	1 cut(s)	571
Bme1390I	CCNGG	2 cut(s)	94, 215
BmeT110I	CYCGRG	1 cut(s)	473
BmgT120I	GGNCC	3 cut(s)	190, 264, 544
BmiI	GGNNCC	2 cut(s)	256, 265
BmrFI	CCNGG	2 cut(s)	94, 215
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	651
BsaHI	GRCGYC	2 cut(s)	69, 141
BsaJI	CCNNGG	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 199
Bse118I	RCCGGY	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	198, 199
BseXI	GCAGC	1 cut(s)	581
BseYI	CCCAGC	1 cut(s)	565
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	4 cut(s)	191, 213, 266, 545
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	473
BsiSI	CCGG	3 cut(s)	94, 210, 538
BslFI	GGGAC	3 cut(s)	76, 215, 597
BslI	CCNNNNNNNGG	2 cut(s)	198, 199
BsmFI	GGGAC	3 cut(s)	76, 215, 597
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	4 cut(s)	191, 213, 266, 545
BsoBI	CYCGRG	1 cut(s)	473
Bsp143I	GATC	4 cut(s)	54, 337, 360, 385
Bsp68I	TCGCGA	1 cut(s)	336
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	4 cut(s)	191, 213, 266, 545
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	256, 265
BspT107I	GGYRCC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	4 cut(s)	54, 337, 360, 385
BssNI	GRCGYC	2 cut(s)	69, 141
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	527
BstACI	GRCGYC	2 cut(s)	69, 141
BstBAI	YACGTR	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	4 cut(s)	57, 340, 363, 388
BstMBI	GATC	4 cut(s)	54, 337, 360, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 66, 263, 328
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	92, 213
BstSNI	TACGTA	1 cut(s)	651
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	1 cut(s)	581
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	191, 213, 266, 545
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	411
BtuMI	TCGCGA	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	190, 264, 544
CseI	GACGC	4 cut(s)	58, 130, 380, 428
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	293, 364, 457
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	4 cut(s)	56, 339, 362, 387
DpnII	GATC	4 cut(s)	54, 337, 360, 385
DrdI	GACNNNNNNGTC	2 cut(s)	68, 179
DseDI	GACNNNNNNGTC	2 cut(s)	68, 179
EaeI	YGGCCR	1 cut(s)	211
Eco105I	TACGTA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	579
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	473
EcoO109I	RGGNCCY	2 cut(s)	264, 544
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	3 cut(s)	296, 367, 460
FaiI	YATR	6 cut(s)	244, 279, 294, 365, 458, 482
FaqI	GGGAC	3 cut(s)	76, 215, 597
FatI	CATG	3 cut(s)	292, 363, 456
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	2 cut(s)	171, 489
Fnu4HI	GCNGC	1 cut(s)	570
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	1 cut(s)	570
FspBI	CTAG	1 cut(s)	368
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	570
GsaI	CCCAGC	1 cut(s)	569
HaeIII	GGCC	4 cut(s)	191, 213, 266, 545
HapII	CCGG	3 cut(s)	94, 210, 538
HgaI	GACGC	4 cut(s)	58, 130, 380, 428
HhaI	GCGC	1 cut(s)	242
Hin1I	GRCGYC	2 cut(s)	69, 141
Hin1II	CATG	3 cut(s)	296, 367, 460
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	2 cut(s)	172, 490
HindII	GTYRAC	2 cut(s)	172, 490
HinfI	GANTC	4 cut(s)	62, 122, 476, 514
HpaII	CCGG	3 cut(s)	94, 210, 538
HphI	GGTGA	2 cut(s)	386, 493
Hpy166II	GTNNAC	4 cut(s)	99, 132, 172, 490
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	4 cut(s)	99, 132, 172, 490
Hpy99I	CGWCG	6 cut(s)	74, 146, 176, 422, 491, 617
HpyAV	CCTTC	2 cut(s)	319, 535
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	5 cut(s)	282, 464, 486, 615, 650
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 66, 263, 328
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	5 cut(s)	282, 464, 486, 615, 650
Hsp92I	GRCGYC	2 cut(s)	69, 141
Hsp92II	CATG	3 cut(s)	296, 367, 460
HspAI	GCGC	1 cut(s)	240
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	54, 337, 360, 385
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	9 cut(s)	51, 107, 169, 200, 206, 223, 227, 551, 579
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	5 cut(s)	282, 464, 486, 615, 650
MaeIII	GTNAC	3 cut(s)	283, 295, 392
MalI	GATC	4 cut(s)	56, 339, 362, 387
MboI	GATC	4 cut(s)	54, 337, 360, 385
MflI	RGATCY	1 cut(s)	385
MlyI	GAGTC	3 cut(s)	56, 485, 508
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	3 cut(s)	96, 245, 482
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	110
MslI	CAYNNNNRTG	3 cut(s)	345, 368, 506
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	94, 210, 538
MspR9I	CCNGG	2 cut(s)	94, 215
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	4 cut(s)	14, 66, 263, 328
NaeI	GCCGGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	94
NdeII	GATC	4 cut(s)	54, 337, 360, 385
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	296, 367, 460
NlaIV	GGNNCC	2 cut(s)	256, 265
NmuCI	GTSAC	1 cut(s)	392
NruI	TCGCGA	1 cut(s)	336
OliI	CACNNNNGTG	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	473
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	571
PleI	GAGTC	3 cut(s)	56, 484, 508
PpsI	GAGTC	3 cut(s)	56, 484, 508
Ppu21I	YACGTR	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	256, 265
PspPI	GGNCC	3 cut(s)	190, 264, 544
PspXI	VCTCGAGB	1 cut(s)	473
PsuI	RGATCY	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	623
RruI	TCGCGA	1 cut(s)	336
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	3 cut(s)	345, 368, 506
SalI	GTCGAC	2 cut(s)	170, 488
SatI	GCNGC	1 cut(s)	570
Sau3AI	GATC	4 cut(s)	54, 337, 360, 385
Sau96I	GGNCC	3 cut(s)	190, 264, 544
SchI	GAGTC	3 cut(s)	56, 485, 508
ScrFI	CCNGG	2 cut(s)	94, 215
SfaNI	GCATC	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	473
SlaI	CTCGAG	1 cut(s)	473
SmiMI	CAYNNNNRTG	3 cut(s)	345, 368, 506
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SnaBI	TACGTA	1 cut(s)	651
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	92, 213
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	5 cut(s)	285, 467, 489, 618, 653
TaqI	TCGA	6 cut(s)	80, 144, 171, 250, 474, 489
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	445, 497
TspRI	CASTG	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	473
XmiI	GTMKAC	2 cut(s)	171, 489
XmnI	GAANNNNTTC	1 cut(s)	110
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.